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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hodgkin lymphoma Multiple myeloma
31 genes
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4 of 31 corroborated by 2+ sources
DTNB(1), GRAMD1B(1), HLA-DQA1(1), HLA-DRB1(1), ULK4(2), BCL2(2), HLA-DQB1(1), EXOC2(1), HBS1L(1), IRF4(2), EOMES(1), SP140(1) +19 more
0.138 0.279 5.27e-38 2.09e-36 ✓ sig. Cluster 210 →
Rheumatoid arthritis Sarcoidosis
58 genes
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18 of 58 corroborated by 2+ sources
SH2B3(1), BTNL2(5), HLA-C(1), HLA-DQA1(2), HLA-DQB3(1), HLA-DRA(1), HLA-DRB1(5), HLA-DRB5(1), OR5V1(1), PLCL1(1), PPT2(1), TNXB(1) +46 more
0.076 0.356 5.73e-38 2.26e-36 ✓ sig. Cluster 39 →
Giant cell glioblastoma Gliosarcoma
12 genes
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FGFR3(1), TP53(1), EGFR(1), MGMT(1), SEPTIN14(1), TACC3(1), PPARG(1), IDH1(1), FGFR1(1), NFKBIA(1), LZTR1(1), TACC1(1)
0.667 0.923 6.41e-38 2.53e-36 ✓ sig. —
Diabetic neuropathy Kidney disease
57 genes
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22 of 57 corroborated by 2+ sources
INS(2), COL4A3(2), ACE(2), AFF3(1), AGT(2), LSAMP(1), NYAP2(1), TCF7L2(1), TENM2(1), VEGFA(3), CTSD(2), EPO(2) +45 more
0.095 0.244 6.75e-38 2.66e-36 ✓ sig. —
Breast neoplasms Non-small-cell lung carcinoma
50 genes
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1 of 50 corroborated by 2+ sources
CAT(1), COL7A1(1), TERT(1), TP53(1), ADAMTS1(1), CST6(1), EGFR(1), GRIK2(1), MACIR(1), ENO1(1), GSTP1(1), IL10(1) +38 more
0.082 0.352 8.17e-38 3.21e-36 ✓ sig. Cluster 21 →
Long qt syndrome Wolff-parkinson-white syndrome
23 genes
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9 of 23 corroborated by 2+ sources
JUP(1), RBM20(1), TBX5(2), TRPM4(1), DSP(1), DPP6(1), KCNJ2(2), CACNA1C(6), MYH6(1), CASQ2(1), KCNH2(7), KCNQ1(7) +11 more
0.176 0.451 9.13e-38 3.58e-36 ✓ sig. Cluster 3 →
Breast neoplasms Hepatocellular carcinoma
98 genes
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19 of 98 corroborated by 2+ sources
CYP17A1(1), DPYD(1), COMT(1), MAP3K1(2), CAT(1), PTEN(1), TERT(2), TP53(4), ADAMTS1(1), ARID1A(1), EGFR(1), EXO1(1) +86 more
0.092 0.190 9.89e-38 3.87e-36 ✓ sig. —
Night blindness, congenital stationary Oguchi disease
13 genes
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13 of 13 corroborated by 2+ sources
CACNA1F(3), PDE6B(3), TRPM1(3), GUCY2D(4), RHO(3), GNB3(3), GNAT1(3), SAG(6), GRM6(3), LRIT3(3), NYX(3), SLC24A1(3) +1 more
0.481 0.929 1.66e-37 6.50e-36 ✓ sig. Cluster 152 →
Cutaneous squamous cell carcinoma Keratinocyte carcinoma
20 genes
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BNC2(1), EPB41L1(1), FOXP1(1), HLA-DQA1(1), TRPS1(1), RALY(1), IRF4(1), KRT5(1), BACH2(1), CTLA4(1), MICA(1), LPP(1) +8 more
0.208 0.526 2.04e-37 7.94e-36 ✓ sig. Cluster 23 →
Lung disease Obstructive airway disease
27 genes
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13 of 27 corroborated by 2+ sources
SERPINA1(3), ACE(2), GSTP1(1), GSTT1(1), IL1B(1), TNF(2), GSTM1(1), CHRNA3(2), PTGS2(2), HIF1A(2), TGFB1(2), MMP9(1) +15 more
0.154 0.270 3.45e-37 1.34e-35 ✓ sig. Cluster 22 →
Cytochrome c oxidase deficiency Mitochondrial disease
20 genes
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20 of 20 corroborated by 2+ sources
COX5A(2), LRPPRC(4), SCO2(4), SCO1(5), COA3(3), COA5(3), COA6(3), COX15(5), SURF1(3), COX14(4), FASTKD2(3), PET100(2) +8 more
0.082 1.000 3.82e-37 1.48e-35 ✓ sig. Cluster 50 →
Congenital ear anomaly nonsyndromic genetic hearing loss
19 genes
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19 of 19 corroborated by 2+ sources
CEACAM16(2), MYO15A(2), OTOF(2), PCDH15(2), TMC1(2), COL11A2(2), MYO6(2), CDH23(2), MYO7A(2), GJB2(2), TECTA(2), CDC14A(2) +7 more
0.200 0.613 8.95e-37 3.47e-35 ✓ sig. Cluster 20 →
Respiratory system disease Seasonal allergic rhinitis
34 genes
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RERE(1), CEBPA(1), CCR7(1), EMSY(1), FCER1G(1), HLA-DQA1(1), ITGB8(1), JAZF1(1), NFATC2(1), PLCL1(1), RORA(1), SLC7A10(1) +22 more
0.110 0.340 9.02e-37 3.49e-35 ✓ sig. —
Ischemic heart disease Kidney failure
41 genes
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19 of 41 corroborated by 2+ sources
TP53(1), AHSG(1), ABCA1(2), ACE(2), APOE(1), EPHX2(1), MLXIPL(2), MMP3(1), SERPINE1(2), SREBF1(2), VEGFA(1), NOS3(1) +29 more
0.108 0.241 1.28e-36 4.93e-35 ✓ sig. Cluster 6 →
Brain injuries Brain ischemia
23 genes
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23 of 23 corroborated by 2+ sources
MPO(2), BDNF(2), ICAM1(2), IL1A(2), IL1B(2), PARP1(2), SOD2(2), TNF(2), IL6(2), RELA(2), PTGS2(2), ALB(2) +11 more
0.180 0.329 1.33e-36 5.12e-35 ✓ sig. Cluster 139 →
Breast neoplasms Urinary bladder neoplasms
49 genes
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1 of 49 corroborated by 2+ sources
CYP17A1(1), CAT(1), TERT(1), TP53(1), ARID1A(1), EGFR(1), ESR2(1), NECTIN2(1), SRC(1), ACHE(1), BCL2(1), ESR1(2) +37 more
0.080 0.345 1.39e-36 5.35e-35 ✓ sig. Cluster 21 →
Scleroderma Systemic sclerosis
20 genes
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19 of 20 corroborated by 2+ sources
NECTIN2(2), TNIP1(3), CAV1(1), HLA-DQB1(3), ACTA2(2), IRF5(3), SIRT1(2), PSORS1C1(2), CNR2(2), STAT4(3), CNR1(2), CCN2(2) +8 more
0.146 0.714 1.55e-36 5.94e-35 ✓ sig. Cluster 19 →
Congenital cataract Congenital total cataract
15 genes
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4 of 15 corroborated by 2+ sources
LSS(1), CRYBB2(1), PGRMC1(1), CRYAA(2), EPHA2(1), GJA8(2), HSF4(2), LIM2(1), MIP(1), GCNT2(1), FYCO1(2), AGK(1) +3 more
0.242 0.938 1.72e-36 6.61e-35 ✓ sig. Cluster 44 →
Diabetic eye disease Diabetic nephropathy type 2
15 genes
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CDKAL1(1), HMG20A(1), JAZF1(1), MACF1(1), NYAP2(1), TCF7L2(1), FTO(1), ASCL2(1), GPSM1(1), ZMIZ1(1), KCNQ1(1), SLC30A8(1) +3 more
0.288 0.833 1.80e-36 6.88e-35 ✓ sig. —
Focal glomerulosclerosis Hereditary steroid-resistant nephrotic syndrome
18 genes
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18 of 18 corroborated by 2+ sources
WT1(2), ACTN4(2), ARHGAP24(2), CD2AP(2), MYO1E(2), PAX2(2), PTPRO(2), TRPC6(2), APOL1(2), PLCE1(2), ANLN(2), CRB2(2) +6 more
0.243 0.529 1.80e-36 6.88e-35 ✓ sig. Cluster 24 →
Obstructive airway disease Pulmonary fibrosis
27 genes
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21 of 27 corroborated by 2+ sources
RTEL1(1), TERT(2), SERPINA1(2), ACE(2), CHRM3(2), HMOX1(2), HSPA1A(2), HSPA1B(2), IL1B(2), MBL2(1), TNF(2), IL6(2) +15 more
0.149 0.270 2.02e-36 7.70e-35 ✓ sig. Cluster 22 →
Alzheimer disease Major depressive disorder
477 genes
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114 of 477 corroborated by 2+ sources
HNF1B(1), KANSL1(1), RERE(1), WWOX(2), ZFPM2(1), APP(6), PSEN1(6), PDE4D(2), ABT1(1), ACE(2), ADAMTS2(1), ADARB1(1) +465 more
0.129 0.243 2.09e-36 7.96e-35 ✓ sig. Cluster 2 →
Atrial fibrillation Metabolic syndrome
189 genes
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39 of 189 corroborated by 2+ sources
SOX5(3), HSPG2(3), JMJD1C(1), RREB1(1), GATA4(4), ZFPM2(1), ATP2A2(1), BRWD1(1), CACNA1D(1), ACE(3), AFF3(1), AKAP6(3) +177 more
0.096 0.219 2.81e-36 1.07e-34 ✓ sig. —
Avascular necrosis of bone Osteonecrosis of the femoral head
14 genes
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CAT(1), COL2A1(1), TRPV4(1), NOS3(1), F2(1), GSTT1(1), GSTM1(1), PLAT(1), F5(1), IL23R(1), ABCB1(1), MMP2(1) +2 more
0.264 1.000 3.68e-36 1.39e-34 ✓ sig. Cluster 29 →
Osteonecrosis of medial femoral condyle Osteonecrosis of the femoral head
14 genes
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CAT(1), COL2A1(1), TRPV4(1), NOS3(1), F2(1), GSTT1(1), GSTM1(1), PLAT(1), F5(1), IL23R(1), ABCB1(1), MMP2(1) +2 more
0.264 1.000 3.68e-36 1.39e-34 ✓ sig. Cluster 29 →

Showing 25 of 20825 pairs, sorted by significance (ascending). Click a column header to sort.