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Guide
Help
Step-by-step user manual: search, browse genes & diseases, pathway analysis, enrichment, comorbidity, and more.
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Community
Community
Partner databases, cross-referenced resources, and data sources integrated into GeDiPNet.
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Support
FAQ
Answers to common questions about data curation, sources, scoring, and platform usage.
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Developer
API
Technical guide to integrating GeDiPNet gene-disease data into your own research pipelines.
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Cross-Referenced Resources

Data Sources

GeDiPNet integrates data from 10 authoritative bioinformatics resource categories. Click any category to expand.

Gene 5 Disease 7 Pathway 2 Protein 3 SNP 1 Gene Ontology 1 miRNA 1 Transcription Factor 1 Drug 1 Literature 3
NCBI Gene
Integrates nomenclature, RefSeqs, maps, pathways, variations, and phenotypes across species.
Human Protein Atlas
Expression profiles of human genes at the mRNA and protein level across tissues.
MIM
Comprehensive catalog of Mendelian traits, disorders, human genes, and genetic phenotypes.
HGNC
HUGO Gene Nomenclature Committee — standardized names and symbols for all human genes.
Ensembl
Genome browser for vertebrate genomes supporting comparative genomics and transcriptional regulation.
DisGeNET
Comprehensive platform for human gene-disease and variant-disease associations.
ClinVar
Public archive of human genetic variations and associated phenotypes with supporting evidence.
Human Phenotype Ontology
Standardized vocabulary of phenotypic abnormalities encountered in human disease.
OMIM
Authoritative compendium of human genes and genetic phenotypes.
Orphanet
Global knowledge base for rare diseases and orphan drugs with expert-validated information.
ClinGen
NIH-funded resource defining clinical relevance of genes and variants for precision medicine.
PsyGeNET
Knowledge platform for exploratory analysis of psychiatric diseases and their associated genes.
KEGG
Kyoto Encyclopedia of Genes and Genomes — linking genomic information with higher-order functional information.
Reactome
Free, open-source, peer-reviewed database of human biological pathways and processes.
UniProt
Comprehensive global resource for protein sequence and functional information.
STRING
Database of known and predicted protein-protein interactions.
Pfam
Large collection of protein families represented by multiple sequence alignments and HMMs.
dbSNP
Repository of human single nucleotide variations, microsatellites, and small-scale insertions/deletions.
Gene Ontology
Structured, controlled vocabularies for annotating genes and gene products in molecular and cellular biology.
miRTarBase
Comprehensive, experimentally validated database of microRNA-target interactions.
TRRUST v2
Manually curated database of human and mouse transcriptional regulatory networks.
DGIdb
Drug-Gene Interaction Database — aggregating drug and gene data for druggable therapeutic target discovery.
PubMed
Database of biomedical and life science literature maintained by NCBI.
MeSH
Controlled, hierarchical vocabulary from NLM for indexing and searching biomedical information.
Medline
NLM's premier bibliographic database with references to life sciences journal articles.