Gene Gene information from NCBI Gene database.
Entrez ID 1050
Gene name CCAAT enhancer binding protein alpha
Gene symbol CEBPA
Synonyms (NCBI Gene)
C/EBP-alphaCEBP
Chromosome 19
Chromosome location 19q13.11
Summary This intronless gene encodes a transcription factor that contains a basic leucine zipper (bZIP) domain and recognizes the CCAAT motif in the promoters of target genes. The encoded protein functions in homodimers and also heterodimers with CCAAT/enhancer-b
miRNA miRNA information provided by mirtarbase database.
174
miRTarBase ID miRNA Experiments Reference
MIRT002025 hsa-miR-124-3p Western blotReporter assay 18451139
MIRT002025 hsa-miR-124-3p Luciferase reporter assay 18451139
MIRT000390 hsa-miR-1-3p Luciferase reporter assay 18818206
MIRT002025 hsa-miR-124-3p Review 20029422
MIRT002025 hsa-miR-124-3p Review 20029422
Transcription factors Transcription factors information provided by TRRUST V2 database.
8
Transcription factor Regulation Reference
DDIT3 Repression 21983012
GATA1 Repression 19825991
LEF1 Unknown 19620402
MYB Unknown 10706719
MYC Repression 19259613
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
140
GO ID Ontology Definition Evidence Reference
GO:0000050 Process Urea cycle IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISO
GO:0000785 Component Chromatin ISA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
116897 1833 ENSG00000245848
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P49715
Protein name CCAAT/enhancer-binding protein alpha (C/EBP alpha)
Protein function Transcription factor that coordinates proliferation arrest and the differentiation of myeloid progenitors, adipocytes, hepatocytes, and cells of the lung and the placenta. Binds directly to the consensus DNA sequence 5'-T[TG]NNGNAA[TG]-3' acting
PDB 6DC0 , 8K8C
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07716 bZIP_2 281 334 Basic region leucine zipper Coiled-coil
Sequence
MESADFYEAEPRPPMSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHET
SIDISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVM
PGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFP
YQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPA
LGAAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVRRERNNIAVRKSR
DKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRE
LDTLRGIFRQLPESSLVKAMGNCA
Sequence length 358
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
30
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Acute myeloid leukemia Likely pathogenic; Pathogenic rs1600021258, rs2145264820, rs2145258913, rs2513332280, rs2513332000, rs2513331483, rs2513328486, rs2513332961, rs2513328286, rs2513332790, rs2513328406, rs2513332781, rs2513328365, rs2145264731, rs2145264339
View all (26 more)
RCV001315717
RCV001379181
RCV001785425
RCV002282592
RCV002282593
View all (38 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Hereditary cancer-predisposing syndrome Likely pathogenic rs2145262824, rs2145262808, rs2145262693 RCV002257354
RCV002255990
RCV002258643
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATOPIC ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATOPIC ECZEMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Erythroblastic Leukemia Erythroblastic Leukemia BEFREE 27389056, 30926096
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 31666608
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 15855281, 18450602, 19277035, 19304957, 20018373, 20628397, 20888888, 20889924, 21177436, 21389317, 21471526, 21674360, 22442349, 22766221, 22990006
View all (18 more)
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia GENOMICS_ENGLAND_DG 28297620
★☆☆☆☆
Found in Text Mining only
Acute Myeloid Leukemia (AML-M2) Leukemia CTD_human_DG 18987666, 19822134, 30420649
★☆☆☆☆
Found in Text Mining only
Acute myeloid leukemia with CEBPA somatic mutations Myeloid Leukemia With CEBPA Somatic Mutations ORPHANET_DG 19357394, 22649106
★☆☆☆☆
Found in Text Mining only
Acute myeloid leukemia with CEBPA somatic mutations Myeloid Leukemia With CEBPA Somatic Mutations Orphanet
★☆☆☆☆
Found in Text Mining only
Acute myeloid leukemia with t(8;21)(q22;q22) translocation Myeloid Leukemia With T(8;21)(Q22;Q22) Translocation Orphanet
★☆☆☆☆
Found in Text Mining only
Acute Myeloid Leukemia, M1 Myeloid Leukemia BEFREE 12351377
★☆☆☆☆
Found in Text Mining only
Acute Myeloid Leukemia, M1 Myeloid Leukemia CTD_human_DG 18987666, 19822134, 30420649
★☆☆☆☆
Found in Text Mining only