Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 20
21
Diseases
240
Unique genes
0.116
Avg. similarity score
Genetic steroid-resistant nephrotic syndrome
Most-connected disease (14 links)
Disease
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Genetic steroid-resistant nephrotic syndrome
Hereditary steroid-resistant nephrotic syndrome
Idiopathic steroid-resistant nephrotic syndrome
Nephrotic syndrome
Focal glomerulosclerosis
Steroid-resistant nephrotic syndrome
Focal segmental glomerulosclerosis
Galloway-mowat syndrome
nephrotic syndrome, type 18
nephrotic syndrome, type 19
nephrotic syndrome, type 20
nephrotic syndrome, type 21
nephrotic syndrome, type 8
Nephrotic syndrome, steroid-resistant, autosomal recessive
Proteinuria
Woolly hair-palmoplantar keratoderma syndrome
nephrotic syndrome, type 3
focal segmental glomerulosclerosis and neurodevelopmental syndrome
schimke immuno-osseous dysplasia
Camos syndrome
Intellectual developmental disorder seizures speech
Member diseases (most connected first ‐ the cluster's core)
| Disease ⇵ | Connections in cluster ⇵ | Significant partners ⇵ | Curated genes ⇵ |
|---|---|---|---|
| Genetic steroid-resistant nephrotic syndrome | 14 | 14 | 34 |
| Hereditary steroid-resistant nephrotic syndrome | 14 | 14 | 34 |
| Idiopathic steroid-resistant nephrotic syndrome | 12 | 12 | 28 |
| Nephrotic syndrome | 11 | 11 | 166 |
| Focal glomerulosclerosis | 10 | 10 | 57 |
| Steroid-resistant nephrotic syndrome | 6 | 6 | 13 |
| Focal segmental glomerulosclerosis | 5 | 5 | 29 |
| Galloway-mowat syndrome | 5 | 5 | 12 |
| nephrotic syndrome, type 18 | 5 | 5 | 1 |
| nephrotic syndrome, type 19 | 4 | 4 | 1 |
| nephrotic syndrome, type 20 | 4 | 4 | 1 |
| nephrotic syndrome, type 21 | 4 | 4 | 1 |
| nephrotic syndrome, type 8 | 4 | 4 | 1 |
| Nephrotic syndrome, steroid-resistant, autosomal recessive | 3 | 3 | 2 |
| Proteinuria | 3 | 3 | 42 |
| Woolly hair-palmoplantar keratoderma syndrome | 3 | 3 | 1 |
| nephrotic syndrome, type 3 | 3 | 3 | 1 |
| focal segmental glomerulosclerosis and neurodevelopmental syndrome | 2 | 2 | 1 |
| schimke immuno-osseous dysplasia | 2 | 2 | 1 |
| Camos syndrome | 1 | 1 | 2 |
| Intellectual developmental disorder seizures speech | 1 | 1 | 2 |
Top shared genes (genes linked to 2+ member diseases)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| NPHS1 | 7 / 21 | Focal glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome and 3 more |
| NPHS2 | 7 / 21 | Focal glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome and 3 more |
| PAX2 | 7 / 21 | Focal glomerulosclerosis, Focal segmental glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome and 3 more |
| ACTN4 | 6 / 21 | Focal glomerulosclerosis, Focal segmental glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome and 2 more |
| ANLN | 6 / 21 | Focal glomerulosclerosis, Focal segmental glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome and 2 more |
| ARHGAP24 | 6 / 21 | Focal glomerulosclerosis, Focal segmental glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome and 2 more |
| CRB2 | 6 / 21 | Focal glomerulosclerosis, Focal segmental glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome and 2 more |
| INF2 | 6 / 21 | Focal glomerulosclerosis, Focal segmental glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome and 2 more |
| MYO1E | 6 / 21 | Focal glomerulosclerosis, Focal segmental glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome and 2 more |
| NUP107 | 6 / 21 | Focal segmental glomerulosclerosis, Galloway-mowat syndrome, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome and 2 more |
| NUP133 | 6 / 21 | Galloway-mowat syndrome, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome and 2 more |
| PLCE1 | 6 / 21 | Focal glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome and 2 more |
| TRPC6 | 6 / 21 | Focal glomerulosclerosis, Focal segmental glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome and 2 more |
| WT1 | 6 / 21 | Focal glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome and 2 more |
| ARHGDIA | 5 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome, Nephrotic syndrome and 1 more |
| AVIL | 5 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Nephrotic syndrome, nephrotic syndrome, type 21 and 1 more |
| CD2AP | 5 / 21 | Focal glomerulosclerosis, Focal segmental glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome and 1 more |
| COQ8B | 5 / 21 | Focal glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome and 1 more |
| NUP160 | 5 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome, Nephrotic syndrome and 1 more |
| NUP93 | 5 / 21 | Focal glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome and 1 more |
| PTPRO | 5 / 21 | Focal glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome and 1 more |
| TBC1D8B | 5 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome, Nephrotic syndrome and 1 more |
| APOL1 | 4 / 21 | Focal glomerulosclerosis, Focal segmental glomerulosclerosis, Hereditary steroid-resistant nephrotic syndrome, Steroid-resistant nephrotic syndrome |
| AXDND1 | 4 / 21 | Focal glomerulosclerosis, Nephrotic syndrome, Nephrotic syndrome, steroid-resistant, autosomal recessive, Steroid-resistant nephrotic syndrome |
| COL4A3 | 4 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Nephrotic syndrome, Steroid-resistant nephrotic syndrome |
| EMP2 | 4 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome, Nephrotic syndrome |
| KANK2 | 4 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Nephrotic syndrome, Woolly hair-palmoplantar keratoderma syndrome |
| LAMA5 | 4 / 21 | Focal glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Nephrotic syndrome |
| MAGI2 | 4 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome, Nephrotic syndrome |
| NUP205 | 4 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome, Nephrotic syndrome |
| NUP85 | 4 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome, Nephrotic syndrome |
| SMARCAL1 | 4 / 21 | Focal glomerulosclerosis, Nephrotic syndrome, schimke immuno-osseous dysplasia, Steroid-resistant nephrotic syndrome |
| AGT | 3 / 21 | Focal glomerulosclerosis, Nephrotic syndrome, Proteinuria |
| ANKFY1 | 3 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome |
| COL4A4 | 3 / 21 | Focal glomerulosclerosis, Nephrotic syndrome, Steroid-resistant nephrotic syndrome |
| COL4A5 | 3 / 21 | Focal glomerulosclerosis, Nephrotic syndrome, Steroid-resistant nephrotic syndrome |
| DAAM2 | 3 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Nephrotic syndrome |
| FAT1 | 3 / 21 | Focal segmental glomerulosclerosis, Genetic steroid-resistant nephrotic syndrome, Nephrotic syndrome |
| GAPVD1 | 3 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome |
| LMX1B | 3 / 21 | Focal segmental glomerulosclerosis, Nephrotic syndrome, Proteinuria |
| NUP37 | 3 / 21 | Genetic steroid-resistant nephrotic syndrome, Hereditary steroid-resistant nephrotic syndrome, Idiopathic steroid-resistant nephrotic syndrome |
| TGFB1 | 3 / 21 | Focal glomerulosclerosis, Nephrotic syndrome, Proteinuria |
| TRIM8 | 3 / 21 | Focal glomerulosclerosis, Focal segmental glomerulosclerosis, focal segmental glomerulosclerosis and neurodevelopmental syndrome |
| WDR73 | 3 / 21 | Camos syndrome, Galloway-mowat syndrome, Nephrotic syndrome |
| ALB | 2 / 21 | Nephrotic syndrome, Proteinuria |
| CLCN5 | 2 / 21 | Nephrotic syndrome, Proteinuria |
| COL4A1 | 2 / 21 | Focal glomerulosclerosis, Nephrotic syndrome |
| COQ2 | 2 / 21 | Focal glomerulosclerosis, Nephrotic syndrome |
| CUBN | 2 / 21 | Focal glomerulosclerosis, Proteinuria |
| EDN1 | 2 / 21 | Focal glomerulosclerosis, Nephrotic syndrome |
| FN1 | 2 / 21 | Focal glomerulosclerosis, Nephrotic syndrome |
| HAVCR1 | 2 / 21 | Focal glomerulosclerosis, Proteinuria |
| HLA-DQA1 | 2 / 21 | Nephrotic syndrome, Proteinuria |
| HLA-DRB1 | 2 / 21 | Nephrotic syndrome, Proteinuria |
| IL1RN | 2 / 21 | Nephrotic syndrome, Proteinuria |
| ITGB4 | 2 / 21 | Focal glomerulosclerosis, Nephrotic syndrome |
| KIRREL2 | 2 / 21 | Focal glomerulosclerosis, Nephrotic syndrome |
| LAMB2 | 2 / 21 | Focal glomerulosclerosis, Nephrotic syndrome |
| MPV17 | 2 / 21 | Focal glomerulosclerosis, Proteinuria |
| MUC16 | 2 / 21 | Nephrotic syndrome, Proteinuria |
| MYH9 | 2 / 21 | Focal glomerulosclerosis, Nephrotic syndrome |
| NCK1 | 2 / 21 | Nephrotic syndrome, Proteinuria |
| NCK2 | 2 / 21 | Nephrotic syndrome, Proteinuria |
| NOC3L | 2 / 21 | Focal glomerulosclerosis, Nephrotic syndrome |
| OSGEP | 2 / 21 | Galloway-mowat syndrome, Nephrotic syndrome |
| PAK1 | 2 / 21 | Intellectual developmental disorder seizures speech, Proteinuria |
| PDSS2 | 2 / 21 | Focal glomerulosclerosis, Nephrotic syndrome |
| REN | 2 / 21 | Nephrotic syndrome, Proteinuria |
| SERPINE1 | 2 / 21 | Focal glomerulosclerosis, Nephrotic syndrome |
| SOD1 | 2 / 21 | Nephrotic syndrome, Proteinuria |
| SPP1 | 2 / 21 | Focal glomerulosclerosis, Proteinuria |
| SYNPO | 2 / 21 | Focal segmental glomerulosclerosis, Nephrotic syndrome |
| TPRKB | 2 / 21 | Galloway-mowat syndrome, Nephrotic syndrome |
| TSFM | 2 / 21 | Nephrotic syndrome, Steroid-resistant nephrotic syndrome |
| ZNF592 | 2 / 21 | Camos syndrome, Galloway-mowat syndrome |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| AGE-RAGE signaling pathway in diabetic complications | KEGG | 18 / 101 | 8.9× | 1.17e-12 | 2.52e-10 ✓ sig. |
| Amoebiasis | KEGG | 16 / 103 | 7.8× | 1.88e-10 | 2.55e-8 ✓ sig. |
| Laminin interactions | Reactome | 9 / 28 | 16.1× | 2.17e-9 | 2.21e-7 ✓ sig. |
| Focal adhesion | KEGG | 20 / 203 | 4.9× | 4.03e-9 | 3.90e-7 ✓ sig. |
| Extracellular matrix organization | Reactome | 7 / 15 | 23.4× | 6.55e-9 | 6.06e-7 ✓ sig. |
| Type I diabetes mellitus | KEGG | 10 / 44 | 11.4× | 1.15e-8 | 9.84e-7 ✓ sig. |
| Nephrin family interactions | Reactome | 6 / 10 | 30.0× | 1.18e-8 | 1.00e-6 ✓ sig. |
| Non-integrin membrane-ECM interactions | Reactome | 8 / 24 | 16.7× | 1.26e-8 | 1.06e-6 ✓ sig. |
| Graft-versus-host disease | KEGG | 10 / 45 | 11.1× | 1.45e-8 | 1.21e-6 ✓ sig. |
| ECM-receptor interaction | KEGG | 13 / 89 | 7.3× | 2.14e-8 | 1.71e-6 ✓ sig. |
| Allograft rejection | KEGG | 9 / 39 | 11.5× | 5.50e-8 | 3.88e-6 ✓ sig. |
| Postmitotic nuclear pore complex (NPC) reformation | Reactome | 7 / 22 | 15.9× | 1.54e-7 | 9.52e-6 ✓ sig. |
| Interleukin-4 and Interleukin-13 signaling | Reactome | 13 / 108 | 6.0× | 2.24e-7 | 1.32e-5 ✓ sig. |
| Anchoring fibril formation | Reactome | 6 / 15 | 20.0× | 2.58e-7 | 1.49e-5 ✓ sig. |
| Leishmaniasis | KEGG | 11 / 78 | 7.1× | 3.86e-7 | 2.14e-5 ✓ sig. |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| regulation of blood pressure | GO:0008217 | 12 / 83 | 11.3× | 6.62e-10 | 1.56e-7 ✓ sig. |
| glomerular basement membrane development | GO:0032836 | 6 / 10 | 46.7× | 8.48e-10 | 1.93e-7 ✓ sig. |
| kidney development | GO:0001822 | 13 / 146 | 6.9× | 5.24e-8 | 7.04e-6 ✓ sig. |
| tRNA threonylcarbamoyladenosine modification | GO:0002949 | 4 / 5 | 62.3× | 1.31e-7 | 1.52e-5 ✓ sig. |
| nephron development | GO:0072006 | 5 / 11 | 35.4× | 1.45e-7 | 1.66e-5 ✓ sig. |
| positive regulation of T cell proliferation | GO:0042102 | 9 / 67 | 10.5× | 1.83e-7 | 2.01e-5 ✓ sig. |
| podocyte differentiation | GO:0072112 | 5 / 12 | 32.4× | 2.47e-7 | 2.59e-5 ✓ sig. |
| collagen-activated tyrosine kinase receptor signaling pathway | GO:0038063 | 5 / 12 | 32.4× | 2.47e-7 | 2.59e-5 ✓ sig. |
| glomerulus development | GO:0032835 | 5 / 13 | 29.9× | 3.97e-7 | 3.85e-5 ✓ sig. |
| cell-cell adhesion | GO:0098609 | 14 / 218 | 5.0× | 9.18e-7 | 7.74e-5 ✓ sig. |
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | 7 / 42 | 13.0× | 9.71e-7 | 8.10e-5 ✓ sig. |
| peptide antigen assembly with MHC class II protein complex | GO:0002503 | 5 / 16 | 24.3× | 1.30e-6 | 1.02e-4 ✓ sig. |
| positive regulation of cell population proliferation | GO:0008284 | 22 / 532 | 3.2× | 1.54e-6 | 1.17e-4 ✓ sig. |
| cell adhesion | GO:0007155 | 25 / 665 | 2.9× | 1.64e-6 | 1.23e-4 ✓ sig. |
| symbiont entry into host cell | GO:0046718 | 10 / 112 | 7.0× | 1.82e-6 | 1.34e-4 ✓ sig. |