Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 21
20
Diseases
3,697
Unique genes
0.180
Avg. similarity score
Ovarian serous carcinoma
Most-connected disease (11 links)
Disease
Pinned (dragged)
Node size = connections within this cluster · edge thickness = similarity strength · hover an edge for its details ·
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Ovarian serous carcinoma
Cancer
Estrogen-receptor negative breast cancer
Lung cancer
Ovarian cancer
Breast cancer
Colorectal cancer
Squamous cell carcinoma
Prostate cancer
Colorectal adenoma
Ovarian epithelial cancer
Androgenetic alopecia
Dental caries
Neoplasms
Uterine fibroid
hereditary mixed polyposis syndrome
C3hex olfactory ability
Essential pentosuria
myopathy with abnormal lipid metabolism
pili torti-developmental delay-neurological abnormalities syndrome
Member diseases (most connected first ‐ the cluster's core)
| Disease ⇵ | Connections in cluster ⇵ | Significant partners ⇵ | Curated genes ⇵ |
|---|---|---|---|
| Ovarian serous carcinoma | 11 | 11 | 270 |
| Cancer | 10 | 10 | 261 |
| Estrogen-receptor negative breast cancer | 9 | 9 | 296 |
| Lung cancer | 9 | 9 | 649 |
| Ovarian cancer | 9 | 9 | 466 |
| Breast cancer | 8 | 7 | 1,066 |
| Colorectal cancer | 8 | 7 | 976 |
| Squamous cell carcinoma | 7 | 6 | 789 |
| Prostate cancer | 6 | 6 | 962 |
| Colorectal adenoma | 5 | 5 | 139 |
| Ovarian epithelial cancer | 4 | 4 | 115 |
| Androgenetic alopecia | 3 | 3 | 408 |
| Dental caries | 2 | 2 | 231 |
| Neoplasms | 2 | 2 | 47 |
| Uterine fibroid | 2 | 2 | 306 |
| hereditary mixed polyposis syndrome | 2 | 2 | 1 |
| C3hex olfactory ability | 2 | 1 | 1 |
| Essential pentosuria | 1 | 1 | 1 |
| myopathy with abnormal lipid metabolism | 1 | 0 | 1 |
| pili torti-developmental delay-neurological abnormalities syndrome | 1 | 0 | 1 |
Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| TERT | 13 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 9 more |
| GREM1 | 12 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 8 more |
| RTEL1 | 12 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 8 more |
| EIF3H | 11 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 7 more |
| HLA-B | 11 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 7 more |
| HLA-DQA1 | 11 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 7 more |
| HLA-DRB5 | 11 / 20 | Breast cancer, Cancer, Colorectal cancer, Dental caries and 7 more |
| MLLT10 | 11 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 7 more |
| NEK10 | 11 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 7 more |
| NSF | 11 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 7 more |
| PIK3C2B | 11 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 7 more |
| POU5F1B | 11 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 7 more |
| SMAD7 | 11 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 7 more |
| TET2 | 11 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal adenoma and 7 more |
| THADA | 11 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 7 more |
| TP53 | 11 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 7 more |
| ATXN2 | 10 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 6 more |
| BABAM1 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| BNC2 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| C11ORF65 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| CCDC170 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| CCDC91 | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| CDCA7 | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| CDYL2 | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| EBF1 | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| ESR1 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| HLA-DQB1 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Dental caries and 6 more |
| HLA-DRB1 | 10 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 6 more |
| HNF1B | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| IGF2BP2 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| IRF4 | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| JAZF1 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| KANSL1 | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| KIF20B | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| KLK15 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Dental caries and 6 more |
| KLK3 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Dental caries and 6 more |
| KRT5 | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| LINC02210-CRHR1 | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| MECOM | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| MRTFA | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| MYEOV | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| PARP1 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| PDLIM5 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| PIGU | 10 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 6 more |
| POU2AF3 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| PREX1 | 10 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 6 more |
| PTHLH | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| RAD51B | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| RBMS1 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| RGS22 | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| RREB1 | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| SCG5 | 10 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 6 more |
| SLK | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| STMN3 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| STN1 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| TRIM46 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Dental caries and 6 more |
| TTC33 | 10 / 20 | Breast cancer, Cancer, Colorectal adenoma, Colorectal cancer and 6 more |
| USHBP1 | 10 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 6 more |
| ZBTB38 | 10 / 20 | Androgenetic alopecia, Breast cancer, Cancer, Colorectal cancer and 6 more |
| AGER | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| AHR | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| AIF1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| ANKRD11 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| ANKRD24 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| ANXA9 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| ARHGEF10L | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| ASIP | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| ATAD5 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| ATE1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| ATP8B1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| AZGP1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| BAD | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| BCL2L11 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| BIK | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| BPIFA3 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| BRCA2 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| BZW1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CALCRL | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CASP8 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CBFA2T2 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CCHCR1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CCND1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CCNE1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CDH15 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CDK5RAP1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CDKN2A | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CELF2 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CERS2 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CHD3 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CHMP4B | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CLK1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CMSS1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| CYBRD1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| DCAF4 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| DLGAP4 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| DNAJC1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| DPEP1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| DVL1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| EFHD1 | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
| EOMES | 9 / 20 | Breast cancer, Cancer, Colorectal cancer, Estrogen-receptor negative breast cancer and 5 more |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Endometrial cancer | KEGG | 36 / 59 | 2.0× | 1.49e-6 | 6.88e-5 ✓ sig. |
| Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA) | Reactome | 19 / 26 | 2.4× | 1.09e-5 | 3.62e-4 ✓ sig. |
| Homologous recombination | KEGG | 26 / 41 | 2.1× | 1.61e-5 | 4.98e-4 ✓ sig. |
| Homologous DNA Pairing and Strand Exchange | Reactome | 18 / 25 | 2.3× | 2.63e-5 | 7.47e-4 ✓ sig. |
| EGFR tyrosine kinase inhibitor resistance | KEGG | 42 / 80 | 1.7× | 4.06e-5 | 1.08e-3 ✓ sig. |
| Prostate cancer | KEGG | 49 / 98 | 1.6× | 5.16e-5 | 1.31e-3 ✓ sig. |
| MET activates PTK2 signaling | Reactome | 20 / 30 | 2.2× | 5.44e-5 | 1.37e-3 ✓ sig. |
| Bladder cancer | KEGG | 25 / 41 | 2.0× | 6.10e-5 | 1.50e-3 ✓ sig. |
| p53-Dependent G1 DNA Damage Response | Reactome | 7 / 7 | 3.2× | 2.61e-4 | 4.81e-3 ✓ sig. |
| Melanoma | KEGG | 37 / 73 | 1.6× | 2.92e-4 | 5.25e-3 ✓ sig. |
| Non-small cell lung cancer | KEGG | 37 / 73 | 1.6× | 2.92e-4 | 5.25e-3 ✓ sig. |
| Colorectal cancer | KEGG | 42 / 87 | 1.6× | 4.53e-4 | 7.39e-3 ✓ sig. |
| RUNX3 regulates p14-ARF | Reactome | 8 / 9 | 2.9× | 5.25e-4 | 8.26e-3 ✓ sig. |
| Gastric cancer | KEGG | 65 / 150 | 1.4× | 7.41e-4 | 1.08e-2 ✓ sig. |
| Pancreatic cancer | KEGG | 37 / 77 | 1.6× | 1.08e-3 | 1.44e-2 ✓ sig. |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| positive regulation of transcription by RNA polymerase II | GO:0045944 | 378 / 1,208 | 1.6× | 5.62e-23 | 1.39e-19 ✓ sig. |
| positive regulation of DNA-templated transcription | GO:0045893 | 239 / 778 | 1.6× | 8.19e-14 | 4.57e-11 ✓ sig. |
| negative regulation of transcription by RNA polymerase II | GO:0000122 | 277 / 1,002 | 1.4× | 4.25e-10 | 1.04e-7 ✓ sig. |
| negative regulation of DNA-templated transcription | GO:0045892 | 188 / 631 | 1.5× | 6.57e-10 | 1.55e-7 ✓ sig. |
| stem cell proliferation | GO:0072089 | 31 / 54 | 2.9× | 1.18e-9 | 2.61e-7 ✓ sig. |
| odontogenesis of dentin-containing tooth | GO:0042475 | 30 / 56 | 2.7× | 1.98e-8 | 3.08e-6 ✓ sig. |
| axon guidance | GO:0007411 | 70 / 192 | 1.8× | 4.99e-8 | 6.77e-6 ✓ sig. |
| positive regulation of miRNA transcription | GO:1902895 | 29 / 56 | 2.6× | 9.13e-8 | 1.12e-5 ✓ sig. |
| DNA damage response | GO:0006974 | 166 / 577 | 1.5× | 9.25e-8 | 1.13e-5 ✓ sig. |
| embryonic organ development | GO:0048568 | 24 / 42 | 2.9× | 1.01e-7 | 1.21e-5 ✓ sig. |
| heart development | GO:0007507 | 90 / 273 | 1.7× | 1.64e-7 | 1.83e-5 ✓ sig. |
| regulation of gene expression | GO:0010468 | 122 / 402 | 1.5× | 2.25e-7 | 2.39e-5 ✓ sig. |
| cell-cell adhesion | GO:0098609 | 75 / 218 | 1.7× | 2.62e-7 | 2.72e-5 ✓ sig. |
| inner ear morphogenesis | GO:0042472 | 31 / 65 | 2.4× | 3.69e-7 | 3.62e-5 ✓ sig. |
| regulation of transcription by RNA polymerase II | GO:0006357 | 394 / 1,602 | 1.2× | 4.71e-7 | 4.44e-5 ✓ sig. |