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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Liver neoplasms Non-small-cell lung carcinoma
19 genes
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TP53(1), GRIK2(1), MACIR(1), NFE2L2(1), STAT3(1), PHGDH(1), XPC(1), FHIT(1), TRMT11(1), CSF3(1), KRAS(1), APC(1) +7 more
0.070 0.139 8.11e-17 1.31e-15 ✓ sig. Cluster 5 →
Congenital cataract Posterior polar cataract
7 genes
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7 of 7 corroborated by 2+ sources
PITX3(4), EPHA2(2), CHMP4B(4), CRYAB(3), MIP(2), CRYBA1(4), GJA3(3)
0.113 0.875 7.57e-17 1.22e-15 ✓ sig. Cluster 43 →
Differentiated thyroid carcinoma Thyroid carcinoma
7 genes
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1 of 7 corroborated by 2+ sources
TRMO(1), NRG1(1), VAV3(1), SEPTIN11(1), NDUFA13(2), PCNX2(1), SOWAHB(1)
0.135 0.778 7.57e-17 1.22e-15 ✓ sig. Cluster 130 →
Anophthalmia/microphthalmia-esophageal atresia syndrome Colobomatous microphthalmia
7 genes
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7 of 7 corroborated by 2+ sources
SOX2(3), STRA6(2), SIX6(3), OTX2(3), PORCN(2), RAX(3), VSX2(2)
0.206 0.467 7.54e-17 1.22e-15 ✓ sig. Cluster 56 →
Barrett esophagus Esophageal disease
10 genes
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CRTC1(1), MVB12B(1), PBX3(1), SLC39A8(1), ATXN2(1), RPGRIP1L(1), NT5C2(1), HMCN2(1), AKTIP(1), KLHL26(1)
0.108 0.333 7.27e-17 1.18e-15 ✓ sig. —
Giant cell arteritis Lupus nephritis
8 genes
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4 of 8 corroborated by 2+ sources
HLA-DRB1(2), MBL2(1), IFNG(2), FCGR2A(1), MMP9(2), CCL2(1), FCGR3A(1), MMP2(2)
0.151 0.444 6.47e-17 1.05e-15 ✓ sig. Cluster 1 →
Congenital short qt syndrome Short qt syndrome
5 genes
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5 of 5 corroborated by 2+ sources
KCNJ2(6), KCNH2(6), KCNQ1(7), CACNA2D1(3), SLC4A3(6)
0.417 1.000 6.41e-17 1.04e-15 ✓ sig. —
Leopard syndrome noonan syndrome with multiple lentigines
5 genes
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5 of 5 corroborated by 2+ sources
BRAF(6), NRAS(2), RAF1(5), PTPN11(6), MAP2K1(2)
0.417 1.000 6.41e-17 1.04e-15 ✓ sig. Cluster 42 →
Chronic obstructive pulmonary disease Pulmonary fibrosis
12 genes
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12 of 12 corroborated by 2+ sources
SERPINA1(2), HMOX1(2), TNF(2), IL6(2), DSP(3), ELN(2), TGFB1(2), MMP9(2), CXCL8(2), CXCL2(2), FAM13A(2), SOD3(2)
0.087 0.286 6.25e-17 1.02e-15 ✓ sig. Cluster 119 →
Seizures Status epilepticus
15 genes
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15 of 15 corroborated by 2+ sources
CAT(2), SCN8A(5), BDNF(2), CRH(2), NOS1(2), NGF(2), FOS(2), PTGS2(2), NOS2(2), SLC8A1(2), CNR1(2), ABCC2(2) +3 more
0.076 0.214 5.86e-17 9.54e-16 ✓ sig. —
Carcinoma Esophageal neoplasms
16 genes
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ACTB(1), TP53(1), EGFR(1), BCL2(1), ENO1(1), SOD2(1), PTGS2(1), CSF3(1), ABCB1(1), TGFBR2(1), PTGS1(1), MET(1) +4 more
0.071 0.216 5.68e-17 9.25e-16 ✓ sig. Cluster 5 →
Neonatal diabetes mellitus Transient neonatal diabetes mellitus
6 genes
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6 of 6 corroborated by 2+ sources
INS(2), GATA4(2), ABCC8(6), KCNJ11(5), GCK(2), SLC2A2(2)
0.286 0.667 5.61e-17 9.14e-16 ✓ sig. Cluster 36 →
Conduction disorder of the heart Polymorphic catecholaminergic ventricular tachycardia
7 genes
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2 of 7 corroborated by 2+ sources
PKP2(1), CACNA1C(1), CASQ2(2), RYR2(2), SCN5A(1), TTN(1), ANK2(1)
0.212 0.467 5.43e-17 8.86e-16 ✓ sig. Cluster 4 →
Hereditary chronic pancreatitis Pancreatitis
7 genes
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7 of 7 corroborated by 2+ sources
CFTR(4), CPA1(3), CTRC(4), PRSS1(6), PRSS2(3), TRPV6(3), SPINK1(5)
0.119 0.875 5.19e-17 8.47e-16 ✓ sig. —
Polymorphic catecholaminergic ventricular tachycardia Wolff-parkinson-white syndrome
8 genes
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2 of 8 corroborated by 2+ sources
KCNJ2(1), CACNA1C(1), CASQ2(2), RYR2(2), SCN5A(1), MYBPC3(1), TTN(1), ANK2(1)
0.136 0.533 5.15e-17 8.41e-16 ✓ sig. Cluster 4 →
Glioma Major depressive disorder
178 genes
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55 of 178 corroborated by 2+ sources
PAFAH1B1(1), CAT(3), TERT(3), DOCK6(1), AKAP6(1), ANK3(1), ANO4(1), BRAF(2), C6orf118(1), CACNA2D3(1), CARD11(1), CDH19(1) +166 more
0.070 0.235 4.95e-17 8.10e-16 ✓ sig. —
Brain ischemia Cholelithiasis
15 genes
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15 of 15 corroborated by 2+ sources
CAT(2), MPO(2), ICAM1(2), IGF1(2), IL1B(2), TNF(2), IL6(2), RELA(2), EGR1(2), MAPK1(2), ALB(2), MMP9(2) +3 more
0.077 0.214 4.71e-17 7.71e-16 ✓ sig. —
Benign myoclonic epilepsy Familial adult myoclonic epilepsy
5 genes
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5 of 5 corroborated by 2+ sources
ADRA2B(2), CNTN2(3), MARCHF6(4), SAMD12(4), YEATS2(4)
0.500 0.833 4.66e-17 7.63e-16 ✓ sig. Cluster 357 →
Cannabis abuse Post-traumatic stress disorder
20 genes
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1 of 20 corroborated by 2+ sources
ABT1(1), CTTNBP2(1), FOXP1(1), FOXP2(1), HMGN4(1), PDE4B(1), SEMA3F(1), SLC39A8(1), ZBTB20(1), ZNF184(1), ZNF804A(1), BDNF(2) +8 more
0.067 0.172 4.55e-17 7.46e-16 ✓ sig. Cluster 2 →
non-syndromic X-linked intellectual disability X-linked intellectual disability
7 genes
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7 of 7 corroborated by 2+ sources
GDI1(4), HUWE1(2), ACSL4(3), DLG3(4), SYP(4), AFF2(2), TSPAN7(3)
0.093 1.000 4.43e-17 7.26e-16 ✓ sig. —
Costello syndrome Leopard syndrome
6 genes
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6 of 6 corroborated by 2+ sources
BRAF(6), NRAS(3), RAF1(5), PTPN11(6), MAP2K1(3), MAP2K2(2)
0.316 0.545 4.28e-17 7.02e-16 ✓ sig. Cluster 42 →
Polycythemia Secondary polycythemia
6 genes
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6 of 6 corroborated by 2+ sources
HBA1(3), EPO(4), HBB(3), EPAS1(3), VHL(2), EGLN1(3)
0.273 0.750 4.10e-17 6.74e-16 ✓ sig. Cluster 105 →
Hyperalgesia Pulmonary fibrosis
15 genes
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15 of 15 corroborated by 2+ sources
AGT(2), IGF1(2), IL1A(2), IL1B(2), TNF(2), IL6(2), HMGB1(2), PTGS2(2), MECP2(2), CXCL8(2), CCL2(2), IL1RN(2) +3 more
0.082 0.169 3.85e-17 6.33e-16 ✓ sig. —
Obsessive-compulsive disorder Psychiatric disorders
27 genes
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2 of 27 corroborated by 2+ sources
RAI1(2), C6orf118(1), CAMTA1(1), DCC(1), KLC1(1), LSAMP(1), PTPRF(1), RIMS1(1), SORCS3(1), TCF4(1), DRD2(1), ANKS1B(1) +15 more
0.063 0.123 3.75e-17 6.17e-16 ✓ sig. Cluster 69 →
Major depressive disorder Oligodendroglioma
143 genes
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26 of 143 corroborated by 2+ sources
SOX5(1), WWOX(1), ALCAM(1), ANK3(1), C6orf118(1), CAMK1D(1), CDH13(2), CHRM3(1), CNTNAP2(2), DCC(1), DCHS2(1), DGKB(2) +131 more
0.060 0.256 3.73e-17 6.14e-16 ✓ sig. Cluster 2 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.