Gene Gene information from NCBI Gene database.
Entrez ID 3039
Gene name Hemoglobin subunit alpha 1
Gene symbol HBA1
Synonyms (NCBI Gene)
ECYT7HBA-T3HBHMETHBA
Chromosome 16
Chromosome location 16p13.3
Summary The human alpha globin gene cluster located on chromosome 16 spans about 30 kb and includes seven loci: 5`- zeta - pseudozeta - mu - pseudoalpha-1 - alpha-2 - alpha-1 - theta - 3`. The alpha-2 (HBA2) and alpha-1 (HBA1) coding sequences are identical. Thes
miRNA miRNA information provided by mirtarbase database.
2
miRTarBase ID miRNA Experiments Reference
MIRT1041439 hsa-miR-4272 CLIP-seq
MIRT1041440 hsa-miR-4787-5p CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
3
Transcription factor Regulation Reference
ATRX Repression 7697714
GATA1 Unknown 12609092;20564185
KLF4 Activation 20331458
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
39
GO ID Ontology Definition Evidence Reference
GO:0001664 Function G protein-coupled receptor binding IDA 18077343
GO:0004601 Function Peroxidase activity IDA 19740759
GO:0005344 Function Oxygen carrier activity IBA
GO:0005344 Function Oxygen carrier activity IEA
GO:0005506 Function Iron ion binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
141800 4823 ENSG00000206172
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
268
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
alpha Thalassemia Pathogenic; Likely pathogenic rs1201093320, rs1181505507, rs1298047912, rs281864535, rs281864571, rs34220980, rs758093235, rs1316527998, rs63749948, rs28928878, rs63751150, rs35993655, rs35672478, rs770988111, rs1455943416
View all (11 more)
RCV005012985
RCV001810036
RCV001506974
RCV002482328
RCV005021811
View all (22 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Alpha-thalassemia, Dutch type Pathogenic; Likely pathogenic rs2505437265, rs1902161681 RCV000017226
RCV000017225
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Erythrocytosis, familial, 7 Pathogenic; Likely pathogenic rs1201093320, rs1181505507, rs281864535, rs281864571, rs34220980, rs758093235, rs33991779, rs33935328, rs35239527, rs33978134, rs33991910, rs63749948, rs63750950, rs281864828, rs28928878
View all (13 more)
RCV005012985
RCV004820880
RCV002482328
RCV005021811
RCV005021812
View all (25 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
HBA1-related disorder Likely pathogenic; Pathogenic rs767911847, rs34883113, rs63750751 RCV003413547
RCV003918611
RCV004756152
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALPHA THALASSEMIA SPECTRUM GenCC
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT SECONDARY POLYCYTHEMIA Disgenet, Orphanet
Disgenet, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOMA CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Erythroblastic Leukemia Erythroblastic Leukemia BEFREE 1732019, 2233727, 6929406, 9753066
★☆☆☆☆
Found in Text Mining only
alpha Thalassemia Alpha thalassemia Pubtator 14576055, 16103716, 17296578, 18166800, 18691171, 23614625, 24627726, 25024506, 26316481, 26824843, 27173219, 27665672, 28901454, 32482310, 32751969
View all (9 more)
Associate
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
alpha Thalassemia Alpha thalassemia Pubtator 21345100 Inhibit
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Alpha thalassemia intermedia alpha Thalassemia ORPHANET_DG
★☆☆☆☆
Found in Text Mining only
Alpha trait thalassemia alpha Thalassemia BEFREE 10634824, 18534068, 23955447, 3236367
★☆☆☆☆
Found in Text Mining only
alpha-Thalassemia alpha Thalassemia BEFREE 10050709, 10206681, 10232687, 10691858, 10711926, 10807536, 10954762, 11042028, 11074535, 11122156, 11844995, 11960579, 12109851, 12542500, 12614224
View all (116 more)
★☆☆☆☆
Found in Text Mining only
alpha-Thalassemia alpha Thalassemia CTD_human_DG 16798638
★☆☆☆☆
Found in Text Mining only
alpha-Thalassemia alpha Thalassemia GENOMICS_ENGLAND_DG 2050764, 23794144
★☆☆☆☆
Found in Text Mining only
alpha-Thalassemia alpha Thalassemia CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
alpha-Thalassemia alpha Thalassemia ORPHANET_DG
★☆☆☆☆
Found in Text Mining only