Gene Gene information from NCBI Gene database.
Entrez ID 5781
Gene name Protein tyrosine phosphatase non-receptor type 11
Gene symbol PTPN11
Synonyms (NCBI Gene)
BPTP3CFCJMMLMETCDSNS1PTP-1DPTP2CSH-PTP2SH-PTP3SHP2
Chromosome 12
Chromosome location 12q24.13
Summary The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic tran
SNPs SNP information provided by dbSNP.
107
SNP ID Visualize variation Clinical significance Consequence
rs28933386 A>G Pathogenic Missense variant, coding sequence variant
rs80338836 GTG>- Pathogenic Coding sequence variant, inframe deletion
rs121918453 G>A,C,T Pathogenic, likely-pathogenic Coding sequence variant, missense variant
rs121918454 C>A,G,T Conflicting-interpretations-of-pathogenicity, likely-pathogenic, pathogenic Coding sequence variant, missense variant
rs121918455 A>C,G Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
1212
miRTarBase ID miRNA Experiments Reference
MIRT003549 hsa-miR-489-3p Luciferase reporter assayWestern blot 20700123
MIRT003549 hsa-miR-489-3p Luciferase reporter assayWestern blot 20700123
MIRT006482 hsa-miR-181a-5p Luciferase reporter assayWestern blot 17382377
MIRT006482 hsa-miR-181a-5p Luciferase reporter assayWestern blot 17382377
MIRT006482 hsa-miR-181a-5p Luciferase reporter assayWestern blot 17382377
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
118
GO ID Ontology Definition Evidence Reference
GO:0000077 Process DNA damage checkpoint signaling IEA
GO:0001784 Function Phosphotyrosine residue binding IPI 11986327
GO:0002283 Process Neutrophil activation involved in immune response ISS
GO:0004721 Function Phosphoprotein phosphatase activity IDA 15133037
GO:0004721 Function Phosphoprotein phosphatase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
176876 9644 ENSG00000179295
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q06124
Protein name Tyrosine-protein phosphatase non-receptor type 11 (EC 3.1.3.48) (Protein-tyrosine phosphatase 1D) (PTP-1D) (Protein-tyrosine phosphatase 2C) (PTP-2C) (SH-PTP2) (SHP-2) (Shp2) (SH-PTP3)
Protein function Acts downstream of various receptor and cytoplasmic protein tyrosine kinases to participate in the signal transduction from the cell surface to the nucleus (PubMed:10655584, PubMed:14739280, PubMed:18559669, PubMed:18829466, PubMed:26742426, Pub
PDB 2SHP , 3B7O , 3MOW , 3O5X , 3TKZ , 3TL0 , 3ZM0 , 3ZM1 , 3ZM2 , 3ZM3 , 4DGP , 4DGX , 4GWF , 4H1O , 4H34 , 4JE4 , 4JEG , 4JMG , 4NWF , 4NWG , 4OHD , 4OHE , 4OHH , 4OHI , 4OHL , 4PVG , 4QSY , 4RDD , 5BK8 , 5DF6 , 5EHP , 5EHR , 5I6V , 5IBM , 5IBS , 5X7B , 5X94 , 5XZR , 6ATD , 6BMR , 6BMU , 6BMV , 6BMW , 6BMX , 6BMY , 6BN5 , 6CMP , 6CMQ , 6CMR , 6CMS , 6CRF
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00017 SH2 6 81 SH2 domain Domain
PF00017 SH2 112 197 SH2 domain Domain
PF00102 Y_phosphatase 273 524 Protein-tyrosine phosphatase Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed, with highest levels in heart, brain, and skeletal muscle. {ECO:0000269|PubMed:1280823, ECO:0000269|PubMed:7681589, ECO:0000269|PubMed:8216283}.
Sequence
Sequence length 593
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
125
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormal bleeding Pathogenic rs28933386 RCV001270562
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Abnormal cardiovascular system morphology Pathogenic rs121918461 RCV000626829
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Abnormal facial shape Likely pathogenic; Pathogenic rs397507540, rs397507542 RCV001730478
RCV000626828
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Astrocytic tumor Likely pathogenic; Pathogenic rs397507539 RCV003764999
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute megakaryoblastic leukemia in down syndrome Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Arrhythmogenic right ventricular cardiomyopathy Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTROCYTOMA CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Abnormal dermatoglyphic pattern Abnormal dermatoglyphic pattern HPO_DG
★☆☆☆☆
Found in Text Mining only
Achondroplasia Achondroplasia Pubtator 30355600 Associate
★☆☆☆☆
Found in Text Mining only
Acquired cubitus valgus Cubitus valgus HPO_DG
★☆☆☆☆
Found in Text Mining only
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 14982869, 18328949, 21930766, 27859216
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 15604238, 16533526, 17910045, 20958258, 22315187, 22591685, 24067137, 24072241, 24610751, 25253770, 26855057, 28245838, 28853218
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 14982869, 15842656, 17330262, 26485542
★☆☆☆☆
Found in Text Mining only
Acute Myeloid Leukemia (AML-M2) Leukemia CTD_human_DG 27992414
★☆☆☆☆
Found in Text Mining only
Acute Myeloid Leukemia, M1 Myeloid Leukemia CTD_human_DG 27992414
★☆☆☆☆
Found in Text Mining only
Acute myelomonocytic leukemia Myelomonocytic Leukemia BEFREE 16679933
★☆☆☆☆
Found in Text Mining only