Gene Gene information from NCBI Gene database.
Entrez ID 22978
Gene name 5'-nucleotidase, cytosolic II
Gene symbol NT5C2
Synonyms (NCBI Gene)
GMPNT5BPNT5SPG45SPG65cN-II
Chromosome 10
Chromosome location 10q24.32-q24.33
Summary This gene encodes a hydrolase that serves as an important role in cellular purine metabolism by acting primarily on inosine 5`-monophosphate and other purine nucleotides. [provided by RefSeq, Oct 2011]
SNPs SNP information provided by dbSNP.
8
SNP ID Visualize variation Clinical significance Consequence
rs11598702 T>C,G Drug-response Intron variant, genic upstream transcript variant, upstream transcript variant
rs587777173 G>A Pathogenic Coding sequence variant, genic upstream transcript variant, 5 prime UTR variant, stop gained
rs587777174 T>A Pathogenic Coding sequence variant, intron variant, stop gained, 5 prime UTR variant
rs763305896 GT>- Pathogenic Coding sequence variant, 5 prime UTR variant, frameshift variant
rs886037656 T>- Pathogenic Coding sequence variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
584
miRTarBase ID miRNA Experiments Reference
MIRT020065 hsa-miR-375 Microarray 20215506
MIRT025290 hsa-miR-34a-5p Proteomics 21566225
MIRT025290 hsa-miR-34a-5p Proteomics 21566225
MIRT025290 hsa-miR-34a-5p Proteomics 21566225
MIRT031022 hsa-miR-21-5p Microarray 18591254
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
42
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0000255 Process Allantoin metabolic process IDA 21873433
GO:0000255 Process Allantoin metabolic process IEA
GO:0003824 Function Catalytic activity IEA
GO:0005515 Function Protein binding IPI 16189514, 19060904, 25416956, 28514442, 32296183, 33961781
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600417 8022 ENSG00000076685
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P49902
Protein name Cytosolic purine 5'-nucleotidase (EC 3.1.3.5) (EC 3.1.3.99) (Cytosolic 5'-nucleotidase II) (cN-II) (Cytosolic IMP/GMP-specific 5'-nucleotidase) (Cytosolic nucleoside phosphotransferase 5'N) (EC 2.7.1.77) (High Km 5'-nucleotidase)
Protein function Broad specificity cytosolic 5'-nucleotidase that catalyzes the dephosphorylation of 6-hydroxypurine nucleoside 5'-monophosphates (PubMed:10092873, PubMed:12907246, PubMed:1659319, PubMed:9371705). In addition, possesses a phosphotransferase acti
PDB 2J2C , 2JC9 , 2JCM , 2XCV , 2XCW , 2XCX , 2XJB , 2XJC , 2XJD , 2XJE , 2XJF , 4H4B , 5CQZ , 5CR7 , 5K7Y , 5L4Z , 5L50 , 5OPK , 5OPL , 5OPM , 5OPN , 5OPO , 5OPP , 6DD3 , 6DDB , 6DDC , 6DDH , 6DDK , 6DDL , 6DDO , 6DDQ , 6DDX , 6DDY , 6DDZ , 6DE0 , 6DE1 , 6DE2 , 6DE3 , 6FIR , 6FIS , 6FIU , 6FIW , 6FXH
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05761 5_nucleotid 35 489 Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:9371705}.
Sequence
Sequence length 561
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
49
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Hereditary spastic paraplegia 45 Likely pathogenic; Pathogenic rs1457224574, rs753295868, rs587777173, rs886037656, rs886037657, rs587777174, rs886037658, rs1385107002, rs2134504868, rs2494516804, rs770036597, rs768651632, rs769417998, rs1458171628, rs2494459588
View all (9 more)
RCV001330410
RCV001352898
RCV000087268
RCV000087269
RCV000087270
View all (19 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Neurodevelopmental disorder Likely pathogenic; Pathogenic rs753295868 RCV002276708
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Thyroid cancer, nonmedullary, 1 Likely pathogenic rs1273292745 RCV005937375
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANOREXIA NERVOSA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATTENTION DEFICIT HYPERACTIVITY DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL RECESSIVE SPASTIC PARAPLEGIA TYPE 45 Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 23377281, 27756303, 29342136, 29535428, 29990496, 30201983, 30910786, 31697823, 6309282
★☆☆☆☆
Found in Text Mining only
Adenosine deaminase deficiency Adenosine Deaminase Deficiency BEFREE 24972650
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 23377281, 27756303, 30910786, 31697823
★☆☆☆☆
Found in Text Mining only
Adult Acute Myeloblastic Leukemia Myeloblastic Leukemia BEFREE 16330448
★☆☆☆☆
Found in Text Mining only
Agenesis of Corpus Callosum Corpus callosum agenesis Pubtator 28327087 Associate
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder GWASCAT_DG 29942085
★☆☆☆☆
Found in Text Mining only
Astrocytoma Astrocytoma BEFREE 18445485, 22132970
★☆☆☆☆
Found in Text Mining only
Attention deficit hyperactivity disorder Attention Deficit Hyperactivity Disorder GWASDB_DG 23453885
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Attention deficit hyperactivity disorder Attention Deficit Hyperactivity Disorder GWASCAT_DG 23453885
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism BEFREE 30610940
★☆☆☆☆
Found in Text Mining only