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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
genetic developmental and epileptic encephalopathy West syndrome
8 genes
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8 of 8 corroborated by 2+ sources
WWOX(2), SIK1(2), ARX(2), SCN1A(2), DNM1(2), STXBP1(2), PLCB1(2), SPTAN1(2)
0.136 0.267 2.18e-15 3.19e-14 ✓ sig. —
Myeloid leukemia Urinary bladder neoplasms
18 genes
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3 of 18 corroborated by 2+ sources
TERT(2), INPP4B(1), KMT2C(1), NECTIN2(1), BCL2(1), FAS(1), STAT3(1), CSF3(1), JAK2(2), KRAS(2), MYC(1), NQO1(1) +6 more
0.065 0.127 2.21e-15 3.22e-14 ✓ sig. —
Ischemic stroke Thromboembolism
7 genes
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7 of 7 corroborated by 2+ sources
PLAU(2), F2(2), PLAT(2), F5(2), PROC(2), PROS1(2), F7(2)
0.123 0.583 2.23e-15 3.25e-14 ✓ sig. Cluster 55 →
Hypoplastic left heart syndrome Tetralogy of fallot
9 genes
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9 of 9 corroborated by 2+ sources
TBX1(5), NOTCH1(2), HAND1(2), RBFOX2(2), MYH6(2), TBX20(2), NKX2-5(6), MYH7(2), CFAP53(2)
0.073 0.500 2.23e-15 3.25e-14 ✓ sig. Cluster 111 →
Delirium, dementia, and cognitive disorders Seizures
13 genes
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13 of 13 corroborated by 2+ sources
INS(2), AGT(2), APOE(2), BCHE(2), BDNF(2), CRH(2), DRD2(2), DRD3(2), PTGS2(2), CNR1(2), SLC1A1(2), TSC1(2) +1 more
0.070 0.232 2.45e-15 3.56e-14 ✓ sig. —
Congenital cartilage disorder Marshall syndrome
7 genes
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7 of 7 corroborated by 2+ sources
SLC26A2(2), COL2A1(2), COL11A1(6), COL11A2(2), COL9A1(2), COL9A2(2), COL9A3(2)
0.163 0.368 2.48e-15 3.61e-14 ✓ sig. —
Colobomatous microphthalmia Congenital cystic eyeball
5 genes
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5 of 5 corroborated by 2+ sources
RAX(2), VSX2(2), ALDH1A3(2), GDF6(2), GDF3(2)
0.294 0.833 2.50e-15 3.63e-14 ✓ sig. Cluster 56 →
Hyperalgesia Hyperemia
8 genes
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8 of 8 corroborated by 2+ sources
AGT(2), IL1B(2), TAC1(2), PTGS2(2), KNG1(2), BDKRB2(2), NOS2(2), CNR2(2)
0.083 0.571 2.64e-15 3.82e-14 ✓ sig. —
Bronchial hyperreactivity Hyperalgesia
8 genes
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8 of 8 corroborated by 2+ sources
NGF(2), TAC1(2), CCL2(2), IL1RN(2), PTGS1(2), VIP(2), TRPA1(2), CALCA(2)
0.083 0.571 2.64e-15 3.82e-14 ✓ sig. —
Cardiomegaly Fatty liver
13 genes
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13 of 13 corroborated by 2+ sources
LEP(2), PPARA(2), SOD2(2), TNF(2), POMC(2), AKT1(2), CYP1B1(2), CYP2E1(2), HTR2B(2), PPARD(2), UCP2(2), CEBPB(2) +1 more
0.079 0.155 2.63e-15 3.82e-14 ✓ sig. —
Breast cancer Uterine fibroid
63 genes
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3 of 63 corroborated by 2+ sources
CASZ1(1), CHEK2(1), RTEL1(1), TERT(1), TP53(4), CSMD1(1), CTNNA2(1), ETV1(1), EXO1(1), LRRN2(1), MDM4(1), NAALADL2(1) +51 more
0.048 0.206 2.64e-15 3.83e-14 ✓ sig. Cluster 20 →
Diabetic eye disease Gestational diabetes
11 genes
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2 of 11 corroborated by 2+ sources
CDKAL1(2), HLA-DQB3(1), TCF7L2(2), HLA-DQB1(1), GCKR(1), KCNQ1(1), SLC30A8(1), CCND2(1), IGF2BP2(1), PAX4(1), ADCY5(1)
0.086 0.229 2.74e-15 3.97e-14 ✓ sig. Cluster 73 →
Obstructive pulmonary disease Open angle glaucoma
49 genes
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5 of 49 corroborated by 2+ sources
HMGA2(1), RERE(1), ZFPM2(1), ANTXR1(1), APOE(2), BCAS3(1), BNC2(1), CADM2(1), CCDC91(1), COL6A3(2), DGKB(1), GLIS3(1) +37 more
0.056 0.133 2.78e-15 4.02e-14 ✓ sig. —
Esophageal squamous cell carcinoma Urinary bladder neoplasms
17 genes
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TP53(1), EGFR(1), KMT2C(1), SOD2(1), KMT2D(1), PTGS2(1), CREBBP(1), HIF1A(1), CDKN1A(1), SOX2(1), RB1(1), CDKN2A(1) +5 more
0.067 0.132 2.80e-15 4.05e-14 ✓ sig. Cluster 5 →
Esophageal neoplasms Non-small-cell lung carcinoma
14 genes
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TP53(1), CDH13(1), GRIK2(1), MACIR(1), ENO1(1), SOD2(1), UCHL1(1), TRMT11(1), CSF3(1), ABCB1(1), MET(1), PRDX1(1) +2 more
0.071 0.189 2.87e-15 4.14e-14 ✓ sig. Cluster 5 →
Cholangiocarcinoma Pancreatic neoplasms
11 genes
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2 of 11 corroborated by 2+ sources
HNF1B(1), PTEN(1), TP53(1), EGFR(1), PTGS2(1), KRAS(1), SMAD4(1), BRCA2(2), BAP1(1), BRCA1(2), MSLN(1)
0.076 0.289 3.06e-15 4.41e-14 ✓ sig. Cluster 5 →
Dental caries Upper aerodigestive tract neoplasm
22 genes
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2 of 22 corroborated by 2+ sources
ABT1(1), ADGRL2(1), GLIS3(1), HLA-DQA1(1), HMGN4(1), RBMS3(1), THSD4(1), TNXB(1), IL1B(2), CHRNB4(1), HLA-DQB1(2), CARMIL1(1) +10 more
0.059 0.137 3.08e-15 4.44e-14 ✓ sig. —
Movement disorder Seizures
13 genes
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13 of 13 corroborated by 2+ sources
HCN1(2), ACHE(2), CRH(2), PDYN(2), ADORA2A(2), DRD1(2), DRD2(2), DRD3(2), OPRM1(2), CNR1(2), SCN1A(2), SCN2A(5) +1 more
0.070 0.228 3.15e-15 4.54e-14 ✓ sig. Cluster 13 →
Hyperinsulinism Hypoglycemia
8 genes
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8 of 8 corroborated by 2+ sources
INS(2), TNF(2), ABCC8(7), HNF4A(3), KCNJ11(3), GCK(3), HNF1A(3), GLUD1(2)
0.129 0.296 3.23e-15 4.65e-14 ✓ sig. Cluster 36 →
Dyslexia Specific language disorder
9 genes
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1 of 9 corroborated by 2+ sources
EPHA4(1), FOXP2(3), RBFOX2(1), STK24(1), ZFP64(1), COX6A1(1), PMFBP1(1), CCDC136(1), INIP(1)
0.074 0.474 3.29e-15 4.73e-14 ✓ sig. Cluster 179 →
Hypoglycemia monogenic diabetes
6 genes
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6 of 6 corroborated by 2+ sources
INS(3), ABCC8(5), HNF4A(2), KCNJ11(2), GCK(2), HNF1A(3)
0.188 0.600 3.35e-15 4.82e-14 ✓ sig. Cluster 36 →
Mesothelioma Pulmonary fibrosis
16 genes
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16 of 16 corroborated by 2+ sources
CAT(2), SPP1(2), IL1A(2), IL4(2), PARP1(2), IL6(2), PDGFA(2), CXCL8(2), HGF(2), IL12B(2), FN1(2), CCL5(2) +4 more
0.068 0.150 3.44e-15 4.95e-14 ✓ sig. —
Amphetamine or sympathomimetic abuse Movement disorder
11 genes
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11 of 11 corroborated by 2+ sources
MAP2K5(3), ACHE(2), GSTP1(2), PDYN(2), ADORA2A(2), DRD1(2), DRD2(2), DRD3(2), GSTM1(2), NRG1(2), OPRM1(2)
0.089 0.193 3.57e-15 5.13e-14 ✓ sig. Cluster 13 →
Gonadal dysgenesis Premature ovarian failure
10 genes
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5 of 10 corroborated by 2+ sources
WT1(1), BMP15(1), BNC1(4), MRPS22(1), NR5A1(5), FMR1(5), LARS2(1), FIGLA(5), SGO2(1), MSH4(4)
0.075 0.357 3.88e-15 5.58e-14 ✓ sig. —
Erythematosquamous dermatosis Psoriasis vulgaris
8 genes
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IL23R(1), IL2RA(1), TYK2(1), ZMIZ1(1), IL13(1), POLI(1), CARD14(1), FAM8A1(1)
0.116 0.364 4.10e-15 5.88e-14 ✓ sig. Cluster 162 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.