Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 73
13
Diseases
1,218
Unique genes
0.096
Avg. similarity score
Ischemic heart disease
Most-connected disease (6 links)
Disease
Pinned (dragged)
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Ischemic heart disease
Heart disease
Atherosclerosis
Kidney failure
Myocardial ischemia
Cerebrovascular disorder
Erectile dysfunction
Large artery stroke
Preeclampsia
Kidney disease
Acetyl-coa carboxylase deficiency
Peho-like syndrome
Zaki syndrome
Member diseases (most connected first ‐ the cluster's core)
| Disease ⇵ | Connections in cluster ⇵ | Significant partners ⇵ | Curated genes ⇵ |
|---|---|---|---|
| Ischemic heart disease | 6 | 6 | 170 |
| Heart disease | 5 | 5 | 146 |
| Atherosclerosis | 4 | 4 | 119 |
| Kidney failure | 4 | 4 | 251 |
| Myocardial ischemia | 4 | 4 | 391 |
| Cerebrovascular disorder | 3 | 3 | 84 |
| Erectile dysfunction | 3 | 3 | 61 |
| Large artery stroke | 3 | 3 | 78 |
| Preeclampsia | 3 | 3 | 98 |
| Kidney disease | 2 | 2 | 425 |
| Acetyl-coa carboxylase deficiency | 1 | 1 | 1 |
| Peho-like syndrome | 1 | 1 | 1 |
| Zaki syndrome | 1 | 1 | 1 |
Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| EDN1 | 8 / 13 | Atherosclerosis, Cerebrovascular disorder, Erectile dysfunction, Ischemic heart disease and 4 more |
| AGT | 7 / 13 | Atherosclerosis, Cerebrovascular disorder, Heart disease, Kidney disease and 3 more |
| MTHFR | 7 / 13 | Atherosclerosis, Cerebrovascular disorder, Ischemic heart disease, Kidney disease and 3 more |
| NOS3 | 7 / 13 | Atherosclerosis, Erectile dysfunction, Heart disease, Ischemic heart disease and 3 more |
| VEGFA | 7 / 13 | Atherosclerosis, Erectile dysfunction, Heart disease, Ischemic heart disease and 3 more |
| ACE | 6 / 13 | Cerebrovascular disorder, Ischemic heart disease, Kidney disease, Kidney failure and 2 more |
| APOE | 6 / 13 | Atherosclerosis, Cerebrovascular disorder, Heart disease, Ischemic heart disease and 2 more |
| ATXN2 | 6 / 13 | Atherosclerosis, Cerebrovascular disorder, Heart disease, Kidney disease and 2 more |
| CRP | 6 / 13 | Atherosclerosis, Cerebrovascular disorder, Heart disease, Ischemic heart disease and 2 more |
| EDNRA | 6 / 13 | Atherosclerosis, Cerebrovascular disorder, Erectile dysfunction, Heart disease and 2 more |
| FTO | 6 / 13 | Heart disease, Ischemic heart disease, Kidney disease, Kidney failure and 2 more |
| LPA | 6 / 13 | Atherosclerosis, Cerebrovascular disorder, Heart disease, Kidney disease and 2 more |
| PTGS2 | 6 / 13 | Atherosclerosis, Cerebrovascular disorder, Ischemic heart disease, Kidney disease and 2 more |
| ABO | 5 / 13 | Cerebrovascular disorder, Heart disease, Ischemic heart disease, Large artery stroke and 1 more |
| ADAMTS7 | 5 / 13 | Heart disease, Ischemic heart disease, Kidney disease, Kidney failure and 1 more |
| AGTR1 | 5 / 13 | Cerebrovascular disorder, Ischemic heart disease, Kidney disease, Kidney failure and 1 more |
| APOA1 | 5 / 13 | Atherosclerosis, Cerebrovascular disorder, Ischemic heart disease, Kidney disease and 1 more |
| CELSR2 | 5 / 13 | Cerebrovascular disorder, Heart disease, Ischemic heart disease, Large artery stroke and 1 more |
| CYBA | 5 / 13 | Atherosclerosis, Heart disease, Ischemic heart disease, Kidney failure and 1 more |
| EPO | 5 / 13 | Heart disease, Ischemic heart disease, Kidney disease, Kidney failure and 1 more |
| FURIN | 5 / 13 | Heart disease, Ischemic heart disease, Large artery stroke, Myocardial ischemia and 1 more |
| HDAC9 | 5 / 13 | Atherosclerosis, Cerebrovascular disorder, Heart disease, Large artery stroke and 1 more |
| LDLR | 5 / 13 | Atherosclerosis, Cerebrovascular disorder, Heart disease, Ischemic heart disease and 1 more |
| PHACTR1 | 5 / 13 | Atherosclerosis, Heart disease, Ischemic heart disease, Large artery stroke and 1 more |
| PLG | 5 / 13 | Heart disease, Kidney disease, Kidney failure, Large artery stroke and 1 more |
| PSRC1 | 5 / 13 | Cerebrovascular disorder, Heart disease, Ischemic heart disease, Large artery stroke and 1 more |
| SERPINE1 | 5 / 13 | Atherosclerosis, Ischemic heart disease, Kidney failure, Myocardial ischemia and 1 more |
| SMARCA4 | 5 / 13 | Atherosclerosis, Cerebrovascular disorder, Heart disease, Large artery stroke and 1 more |
| TDRD15 | 5 / 13 | Atherosclerosis, Erectile dysfunction, Heart disease, Myocardial ischemia and 1 more |
| TGFB1 | 5 / 13 | Cerebrovascular disorder, Heart disease, Kidney disease, Kidney failure and 1 more |
| TNF | 5 / 13 | Atherosclerosis, Cerebrovascular disorder, Ischemic heart disease, Kidney failure and 1 more |
| TWIST1 | 5 / 13 | Atherosclerosis, Cerebrovascular disorder, Ischemic heart disease, Large artery stroke and 1 more |
| ZC3HC1 | 5 / 13 | Erectile dysfunction, Heart disease, Ischemic heart disease, Large artery stroke and 1 more |
| ABCA1 | 4 / 13 | Atherosclerosis, Ischemic heart disease, Kidney failure, Myocardial ischemia |
| ABCG8 | 4 / 13 | Heart disease, Ischemic heart disease, Large artery stroke, Myocardial ischemia |
| ADIPOQ | 4 / 13 | Atherosclerosis, Ischemic heart disease, Kidney failure, Myocardial ischemia |
| AGER | 4 / 13 | Atherosclerosis, Ischemic heart disease, Kidney failure, Myocardial ischemia |
| ALB | 4 / 13 | Cerebrovascular disorder, Heart disease, Kidney disease, Kidney failure |
| ALOX5AP | 4 / 13 | Atherosclerosis, Ischemic heart disease, Kidney disease, Myocardial ischemia |
| CCL2 | 4 / 13 | Atherosclerosis, Ischemic heart disease, Kidney failure, Myocardial ischemia |
| F2 | 4 / 13 | Cerebrovascular disorder, Heart disease, Ischemic heart disease, Myocardial ischemia |
| GSTM1 | 4 / 13 | Atherosclerosis, Ischemic heart disease, Kidney failure, Myocardial ischemia |
| HECTD4 | 4 / 13 | Ischemic heart disease, Kidney disease, Kidney failure, Myocardial ischemia |
| HMOX1 | 4 / 13 | Ischemic heart disease, Kidney failure, Myocardial ischemia, Preeclampsia |
| IL6 | 4 / 13 | Atherosclerosis, Cerebrovascular disorder, Kidney failure, Myocardial ischemia |
| JCAD | 4 / 13 | Heart disease, Ischemic heart disease, Large artery stroke, Myocardial ischemia |
| KIF6 | 4 / 13 | Ischemic heart disease, Kidney disease, Kidney failure, Myocardial ischemia |
| LEPR | 4 / 13 | Ischemic heart disease, Kidney disease, Kidney failure, Myocardial ischemia |
| LIPA | 4 / 13 | Heart disease, Ischemic heart disease, Large artery stroke, Myocardial ischemia |
| MMP1 | 4 / 13 | Atherosclerosis, Ischemic heart disease, Kidney failure, Myocardial ischemia |
| MMP12 | 4 / 13 | Cerebrovascular disorder, Ischemic heart disease, Large artery stroke, Myocardial ischemia |
| MMP3 | 4 / 13 | Ischemic heart disease, Kidney failure, Large artery stroke, Myocardial ischemia |
| NOS2 | 4 / 13 | Atherosclerosis, Cerebrovascular disorder, Kidney disease, Kidney failure |
| NPPB | 4 / 13 | Atherosclerosis, Heart disease, Ischemic heart disease, Myocardial ischemia |
| PLA2G7 | 4 / 13 | Atherosclerosis, Cerebrovascular disorder, Ischemic heart disease, Myocardial ischemia |
| PLPP3 | 4 / 13 | Heart disease, Ischemic heart disease, Large artery stroke, Myocardial ischemia |
| PON1 | 4 / 13 | Atherosclerosis, Heart disease, Ischemic heart disease, Myocardial ischemia |
| PPARA | 4 / 13 | Ischemic heart disease, Kidney disease, Kidney failure, Myocardial ischemia |
| SCARB1 | 4 / 13 | Heart disease, Kidney disease, Kidney failure, Myocardial ischemia |
| SH2B3 | 4 / 13 | Cerebrovascular disorder, Ischemic heart disease, Large artery stroke, Myocardial ischemia |
| TCF21 | 4 / 13 | Heart disease, Ischemic heart disease, Large artery stroke, Myocardial ischemia |
| TCF7L2 | 4 / 13 | Atherosclerosis, Kidney disease, Kidney failure, Myocardial ischemia |
| TLR4 | 4 / 13 | Atherosclerosis, Ischemic heart disease, Kidney failure, Myocardial ischemia |
| ABCG5 | 3 / 13 | Atherosclerosis, Ischemic heart disease, Myocardial ischemia |
| ACP1 | 3 / 13 | Ischemic heart disease, Large artery stroke, Myocardial ischemia |
| AHSG | 3 / 13 | Ischemic heart disease, Kidney failure, Myocardial ischemia |
| ANGPTL4 | 3 / 13 | Heart disease, Ischemic heart disease, Myocardial ischemia |
| ANK2 | 3 / 13 | Cerebrovascular disorder, Heart disease, Preeclampsia |
| APOB | 3 / 13 | Atherosclerosis, Ischemic heart disease, Myocardial ischemia |
| APOC1 | 3 / 13 | Atherosclerosis, Heart disease, Myocardial ischemia |
| APOC3 | 3 / 13 | Ischemic heart disease, Kidney failure, Myocardial ischemia |
| ATP2B1 | 3 / 13 | Heart disease, Ischemic heart disease, Myocardial ischemia |
| B2M | 3 / 13 | Heart disease, Kidney disease, Kidney failure |
| CDH13 | 3 / 13 | Erectile dysfunction, Heart disease, Myocardial ischemia |
| CLCN6 | 3 / 13 | Ischemic heart disease, Myocardial ischemia, Preeclampsia |
| CLU | 3 / 13 | Atherosclerosis, Kidney disease, Kidney failure |
| CNNM2 | 3 / 13 | Kidney disease, Large artery stroke, Myocardial ischemia |
| COL4A2 | 3 / 13 | Atherosclerosis, Heart disease, Myocardial ischemia |
| CUBN | 3 / 13 | Ischemic heart disease, Kidney disease, Myocardial ischemia |
| DDAH2 | 3 / 13 | Ischemic heart disease, Myocardial ischemia, Preeclampsia |
| EPHX2 | 3 / 13 | Ischemic heart disease, Kidney failure, Myocardial ischemia |
| ESR1 | 3 / 13 | Atherosclerosis, Ischemic heart disease, Myocardial ischemia |
| F5 | 3 / 13 | Cerebrovascular disorder, Heart disease, Kidney failure |
| FABP2 | 3 / 13 | Ischemic heart disease, Kidney failure, Myocardial ischemia |
| FCGR2A | 3 / 13 | Atherosclerosis, Ischemic heart disease, Myocardial ischemia |
| FGA | 3 / 13 | Cerebrovascular disorder, Heart disease, Kidney disease |
| FGB | 3 / 13 | Ischemic heart disease, Kidney failure, Myocardial ischemia |
| FGF2 | 3 / 13 | Erectile dysfunction, Kidney disease, Myocardial ischemia |
| FGF5 | 3 / 13 | Kidney disease, Kidney failure, Preeclampsia |
| GATM | 3 / 13 | Kidney disease, Kidney failure, Myocardial ischemia |
| GPX1 | 3 / 13 | Ischemic heart disease, Kidney failure, Myocardial ischemia |
| GSTP1 | 3 / 13 | Kidney disease, Kidney failure, Myocardial ischemia |
| GSTT1 | 3 / 13 | Ischemic heart disease, Kidney failure, Myocardial ischemia |
| HBB | 3 / 13 | Heart disease, Kidney disease, Kidney failure |
| HHIPL1 | 3 / 13 | Heart disease, Ischemic heart disease, Myocardial ischemia |
| HMGCR | 3 / 13 | Ischemic heart disease, Kidney failure, Myocardial ischemia |
| HSPA1A | 3 / 13 | Atherosclerosis, Kidney failure, Myocardial ischemia |
| ICA1L | 3 / 13 | Heart disease, Ischemic heart disease, Myocardial ischemia |
| ICAM1 | 3 / 13 | Atherosclerosis, Cerebrovascular disorder, Myocardial ischemia |
| IGF1 | 3 / 13 | Kidney disease, Kidney failure, Myocardial ischemia |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| AGE-RAGE signaling pathway in diabetic complications | KEGG | 47 / 101 | 4.6× | 5.87e-21 | 5.41e-18 ✓ sig. |
| Lipid and atherosclerosis | KEGG | 69 / 216 | 3.1× | 6.22e-19 | 4.29e-16 ✓ sig. |
| Interleukin-4 and Interleukin-13 signaling | Reactome | 45 / 108 | 4.1× | 8.70e-18 | 4.73e-15 ✓ sig. |
| Pathways in cancer | KEGG | 115 / 533 | 2.1× | 1.18e-15 | 4.48e-13 ✓ sig. |
| Complement and coagulation cascades | KEGG | 37 / 88 | 4.1× | 5.16e-15 | 1.73e-12 ✓ sig. |
| Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) | Reactome | 45 / 125 | 3.5× | 6.15e-15 | 2.04e-12 ✓ sig. |
| Platelet degranulation | Reactome | 44 / 123 | 3.5× | 1.61e-14 | 4.79e-12 ✓ sig. |
| Cholesterol metabolism | KEGG | 27 / 51 | 5.2× | 2.31e-14 | 6.62e-12 ✓ sig. |
| Post-translational protein phosphorylation | Reactome | 38 / 108 | 3.5× | 1.82e-12 | 3.80e-10 ✓ sig. |
| HIF-1 signaling pathway | KEGG | 38 / 110 | 3.4× | 3.49e-12 | 6.83e-10 ✓ sig. |
| Fluid shear stress and atherosclerosis | KEGG | 42 / 141 | 2.9× | 6.26e-11 | 9.37e-9 ✓ sig. |
| Malaria | KEGG | 23 / 50 | 4.5× | 8.26e-11 | 1.21e-8 ✓ sig. |
| Chagas disease | KEGG | 34 / 103 | 3.3× | 1.97e-10 | 2.66e-8 ✓ sig. |
| African trypanosomiasis | KEGG | 19 / 37 | 5.1× | 3.38e-10 | 4.32e-8 ✓ sig. |
| Hormone signaling | KEGG | 52 / 219 | 2.3× | 3.19e-9 | 3.16e-7 ✓ sig. |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| positive regulation of gene expression | GO:0010628 | 101 / 504 | 3.1× | 8.83e-25 | 2.66e-21 ✓ sig. |
| response to xenobiotic stimulus | GO:0009410 | 64 / 248 | 4.0× | 4.31e-22 | 9.25e-19 ✓ sig. |
| positive regulation of transcription by RNA polymerase II | GO:0045944 | 161 / 1,208 | 2.0× | 5.70e-19 | 7.88e-16 ✓ sig. |
| regulation of blood pressure | GO:0008217 | 33 / 83 | 6.1× | 3.02e-18 | 3.76e-15 ✓ sig. |
| inflammatory response | GO:0006954 | 84 / 467 | 2.8× | 1.05e-17 | 1.21e-14 ✓ sig. |
| kidney development | GO:0001822 | 43 / 146 | 4.5× | 1.41e-17 | 1.60e-14 ✓ sig. |
| lipid metabolic process | GO:0006629 | 122 / 840 | 2.2× | 2.33e-17 | 2.55e-14 ✓ sig. |
| positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction | GO:0051897 | 52 / 217 | 3.7× | 1.08e-16 | 1.02e-13 ✓ sig. |
| positive regulation of miRNA transcription | GO:1902895 | 26 / 56 | 7.1× | 1.13e-16 | 1.05e-13 ✓ sig. |
| response to nutrient | GO:0007584 | 27 / 63 | 6.6× | 3.63e-16 | 3.09e-13 ✓ sig. |
| cellular response to lipopolysaccharide | GO:0071222 | 47 / 187 | 3.9× | 4.44e-16 | 3.73e-13 ✓ sig. |
| response to lipopolysaccharide | GO:0032496 | 43 / 161 | 4.1× | 7.41e-16 | 5.95e-13 ✓ sig. |
| blood coagulation | GO:0007596 | 34 / 106 | 4.9× | 2.01e-15 | 1.49e-12 ✓ sig. |
| negative regulation of apoptotic process | GO:0043066 | 85 / 524 | 2.5× | 3.89e-15 | 2.75e-12 ✓ sig. |
| response to hypoxia | GO:0001666 | 44 / 176 | 3.8× | 4.76e-15 | 3.29e-12 ✓ sig. |
Pairs within this cluster, by significance
| Disease A ⇵ | Disease B ⇵ | Similarity score ⇵ | Shared genes ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Ischemic heart disease | Myocardial ischemia | 0.434 | 170 | 1.83e-290 | 1.92e-287 ✓ sig. |
| Kidney disease | Kidney failure | 0.175 | 101 | 6.97e-93 | 6.83e-91 ✓ sig. |
| Heart disease | Myocardial ischemia | 0.137 | 65 | 3.63e-65 | 2.58e-63 ✓ sig. |
| Atherosclerosis | Myocardial ischemia | 0.108 | 50 | 1.65e-48 | 8.81e-47 ✓ sig. |
| Kidney failure | Myocardial ischemia | 0.101 | 59 | 2.17e-40 | 9.70e-39 ✓ sig. |
| Ischemic heart disease | Kidney failure | 0.108 | 41 | 1.28e-36 | 5.22e-35 ✓ sig. |
| Heart disease | Ischemic heart disease | 0.120 | 34 | 6.64e-36 | 2.63e-34 ✓ sig. |
| Atherosclerosis | Ischemic heart disease | 0.111 | 29 | 2.73e-31 | 9.19e-30 ✓ sig. |
| Atherosclerosis | Cerebrovascular disorder | 0.115 | 21 | 1.54e-26 | 4.38e-25 ✓ sig. |
| Cerebrovascular disorder | Heart disease | 0.095 | 20 | 5.80e-23 | 1.33e-21 ✓ sig. |
| Heart disease | Large artery stroke | 0.092 | 19 | 4.56e-22 | 1.00e-20 ✓ sig. |
| Ischemic heart disease | Large artery stroke | 0.073 | 17 | 8.36e-18 | 1.50e-16 ✓ sig. |
| Cerebrovascular disorder | Large artery stroke | 0.079 | 12 | 9.98e-15 | 1.48e-13 ✓ sig. |
| Kidney failure | Preeclampsia | 0.036 | 12 | 6.36e-8 | 4.87e-7 ✓ sig. |
| Ischemic heart disease | Preeclampsia | 0.039 | 10 | 1.25e-7 | 9.18e-7 ✓ sig. |
| Atherosclerosis | Erectile dysfunction | 0.034 | 6 | 7.37e-6 | 3.93e-5 ✓ sig. |
| Erectile dysfunction | Heart disease | 0.030 | 6 | 2.37e-5 | 1.18e-4 ✓ sig. |
| Acetyl-coa carboxylase deficiency | Erectile dysfunction | 0.016 | 1 | 3.96e-3 | 5.01e-3 ✓ sig. |
| Preeclampsia | Zaki syndrome | 0.010 | 1 | 6.36e-3 | 7.64e-3 ✓ sig. |
| Kidney disease | Peho-like syndrome | 0.002 | 1 | 2.76e-2 | 2.94e-2 ✓ sig. |