Gene Gene information from NCBI Gene database.
Entrez ID 64240
Gene name ATP binding cassette subfamily G member 5
Gene symbol ABCG5
Synonyms (NCBI Gene)
STSLSTSL2
Chromosome 2
Chromosome location 2p21
Summary The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, M
miRNA miRNA information provided by mirtarbase database.
22
miRTarBase ID miRNA Experiments Reference
MIRT724539 hsa-miR-6771-3p HITS-CLIP 19536157
MIRT724538 hsa-miR-130b-5p HITS-CLIP 19536157
MIRT724537 hsa-miR-3191-5p HITS-CLIP 19536157
MIRT724536 hsa-miR-4753-3p HITS-CLIP 19536157
MIRT724535 hsa-miR-4768-5p HITS-CLIP 19536157
Transcription factors Transcription factors information provided by TRRUST V2 database.
3
Transcription factor Regulation Reference
HNF4A Repression 21123766
NR5A2 Activation 15121760
SREBF2 Repression 21123766
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
50
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0005515 Function Protein binding IPI 16870176, 17474147, 27144356
GO:0005524 Function ATP binding IDA 16893193
GO:0005524 Function ATP binding IEA
GO:0005886 Component Plasma membrane IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605459 13886 ENSG00000138075
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9H222
Protein name ATP-binding cassette sub-family G member 5 (EC 7.6.2.-) (Sterolin-1)
Protein function ABCG5 and ABCG8 form an obligate heterodimer that mediates Mg(2+)- and ATP-dependent sterol transport across the cell membrane (PubMed:27144356). Plays an essential role in the selective transport of dietary plant sterols and cholesterol in and
PDB 5DO7 , 7JR7 , 7R87 , 7R88 , 7R89 , 7R8A , 7R8B , 8CUB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00005 ABC_tran 69 221 ABC transporter Domain
PF19055 ABC2_membrane_7 250 362 ABC-2 type transporter Family
PF01061 ABC2_membrane 366 580 ABC-2 type transporter Family
Tissue specificity TISSUE SPECIFICITY: Strongly expressed in the liver, lower levels in the small intestine and colon. {ECO:0000269|PubMed:11099417, ECO:0000269|PubMed:11138003}.
Sequence
Sequence length 651
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
38
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
ABCG5-related disorder Pathogenic; Likely pathogenic rs119479066, rs119480069 RCV003415656
RCV004752684
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Abnormal circulating lipid concentration Pathogenic rs781098379 RCV002283584
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cardiovascular phenotype Pathogenic; Likely pathogenic rs140111105, rs768019354, rs781098379, rs2466150084, rs145300824, rs119480069, rs754944896, rs1470569820, rs762031825 RCV004038481
RCV002382475
RCV004047564
RCV002383671
RCV003162174
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Hypercholesterolemia Pathogenic rs781098379 RCV002282969
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormal bleeding Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA, HEMOLYTIC, CONGENITAL Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARTERIOSCLEROSIS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Alzheimer Disease, Late Onset Alzheimer disease BEFREE 15980630
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 11099417, 15044450, 15175362, 19005228, 24423340
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Arthritis Arthritis HPO_DG
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis BEFREE 11099417, 15044450, 15175362, 19005228, 24423340
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Atherosclerosis Atherosclerosis CTD_human_DG 11138003
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Atherosclerosis Atherosclerosis Pubtator 33228147 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bernard Soulier Syndrome Bernard-soulier syndrome Pubtator 27291889 Associate
★☆☆☆☆
Found in Text Mining only
Blood Coagulation Disorders Blood coagulation disorder Pubtator 40629026 Associate
★☆☆☆☆
Found in Text Mining only
Blood Platelet Disorders Platelet-type bleeding disorder GENOMICS_ENGLAND_DG 27291889
★☆☆☆☆
Found in Text Mining only
Cardiovascular Diseases Cardiovascular Diseases BEFREE 12865730, 17976197, 19306529
★☆☆☆☆
Found in Text Mining only