Gene Gene information from NCBI Gene database.
Entrez ID 335
Gene name Apolipoprotein A1
Gene symbol APOA1
Synonyms (NCBI Gene)
AMYLD3HPALP2apo(a)
Chromosome 11
Chromosome location 11q23.3
Summary This gene encodes apolipoprotein A-I, which is the major protein component of high density lipoprotein (HDL) in plasma. The encoded preproprotein is proteolytically processed to generate the mature protein, which promotes cholesterol efflux from tissues t
miRNA miRNA information provided by mirtarbase database.
63
miRTarBase ID miRNA Experiments Reference
MIRT483217 hsa-miR-3179 PAR-CLIP 20371350
MIRT483216 hsa-miR-3202 PAR-CLIP 20371350
MIRT483214 hsa-miR-4747-5p PAR-CLIP 20371350
MIRT483215 hsa-miR-5196-5p PAR-CLIP 20371350
MIRT483217 hsa-miR-3179 PAR-CLIP 20371350
Transcription factors Transcription factors information provided by TRRUST V2 database.
4
Transcription factor Regulation Reference
FOXA2 Unknown 7961760
GATA6 Unknown 14659877
HNF4A Unknown 7961760
SP1 Unknown 10829013
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
121
GO ID Ontology Definition Evidence Reference
GO:0001540 Function Amyloid-beta binding IDA 11297421
GO:0001540 Function Amyloid-beta binding IPI 9211985
GO:0001935 Process Endothelial cell proliferation IEA
GO:0002719 Process Negative regulation of cytokine production involved in immune response IDA 12458630
GO:0005102 Function Signaling receptor binding IPI 27477018
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
107680 600 ENSG00000118137
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P02647
Protein name Apolipoprotein A-I (Apo-AI) (ApoA-I) (Apolipoprotein A1) [Cleaved into: Proapolipoprotein A-I (ProapoA-I); Truncated apolipoprotein A-I (Apolipoprotein A-I(1-242))]
Protein function Participates in the reverse transport of cholesterol from tissues to the liver for excretion by promoting cholesterol efflux from tissues and by acting as a cofactor for the lecithin cholesterol acyltransferase (LCAT). As part of the SPAP comple
PDB 1AV1 , 1GW3 , 1GW4 , 1ODP , 1ODQ , 1ODR , 2MSC , 2MSD , 2MSE , 2N5E , 3K2S , 3R2P , 4V6M , 6CC9 , 6CCH , 6CCX , 6CLZ , 6CM1 , 6PTS , 6PTW , 6W4E , 6W4F , 7KJR , 7RSC , 7RSE , 8EQS
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01442 Apolipoprotein 69 259 Apolipoprotein A1/A4/E domain Domain
Tissue specificity TISSUE SPECIFICITY: Major protein of plasma HDL, also found in chylomicrons. Synthesized in the liver and small intestine. The oxidized form at Met-110 and Met-136 is increased in individuals with increased risk for coronary artery disease, such as in car
Sequence
Sequence length 267
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
51
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
APOLIPOPROTEIN A-I (MARBURG) Pathogenic rs121912716 RCV000019500
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
APOLIPOPROTEIN A-I (MILANO) Pathogenic rs28931573 RCV000019498
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
APOLIPOPROTEIN A-I (MUNSTER3C) Pathogenic rs121912720 RCV000019503
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
APOLIPOPROTEIN A-I (NORWAY) Pathogenic rs121912718 RCV000019502
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AAPOAI AMYLOIDOSIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMERS DISEASE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMYLOID POLYNEUROPATHY, IOWA TYPE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMYLOIDOSIS, FAMILIAL VISCERAL Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
AApoAI amyloidosis AApoAI amyloidosis Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Abetalipoproteinemia Abetalipoproteinemia Pubtator 7852858 Inhibit
★☆☆☆☆
Found in Text Mining only
Acute Cerebrovascular Accidents Stroke CTD_human_DG 19433014
★☆☆☆☆
Found in Text Mining only
Acute Coronary Syndrome Coronary Syndrome BEFREE 16039279, 28992985, 30984786, 31324073, 8176109
★☆☆☆☆
Found in Text Mining only
Acute Coronary Syndrome Coronary Syndrome LHGDN 19122170
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 31188743
★☆☆☆☆
Found in Text Mining only
Acute pancreatitis Pancreatitis BEFREE 29183667
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 14666619
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma CTD_human_DG 15378696
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of colon Adenocarcinoma Of Colon BEFREE 14666619
★☆☆☆☆
Found in Text Mining only