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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bipolar depression Mood disorder
36 genes
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6 of 36 corroborated by 2+ sources
COMT(1), CACNA1D(1), SERPINA1(1), ANK3(1), DISC1(1), GRIK2(1), HTR1A(1), NTRK2(1), PDE4B(2), RELN(2), THSD7A(2), BDNF(1) +24 more
0.098 0.343 1.29e-35 4.78e-34 ✓ sig. Cluster 2 →
Arrhythmogenic right ventricular cardiomyopathy Wolff-parkinson-white syndrome
19 genes
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9 of 19 corroborated by 2+ sources
ABCC9(1), ACTN2(1), JUP(5), PRKAG2(5), RBM20(1), TRPM4(1), DSP(4), MYH6(1), FLNC(1), LMNA(2), RYR2(3), SCN5A(3) +7 more
0.224 0.373 1.17e-35 4.33e-34 ✓ sig. Cluster 4 →
Periodontal disease Periodontitis
18 genes
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1 of 18 corroborated by 2+ sources
CAMK2N1(1), CCR7(1), FKBP1C(1), KALRN(1), TSEN2(1), PPARG(1), IL6(1), PIK3C3(1), SMARCE1(1), MBP(1), ITGA4(1), SYNDIG1(1) +6 more
0.113 0.947 1.11e-35 4.10e-34 ✓ sig. —
Corneal neovascularization Keratitis
13 genes
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PID1(1), MSI2(1), TMEM74(1), TRHR(1), STK11(1), ADCY2(1), PDE1C(1), NT5C1B(1), NLRP1(1), WSCD1(1), NT5C1B-RDH14(1), IL17RE(1) +1 more
0.464 0.722 9.72e-36 3.61e-34 ✓ sig. —
Lymphocytic leukemia Multiple myeloma
30 genes
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3 of 30 corroborated by 2+ sources
DTNB(1), GRAMD1B(1), HLA-DQA1(1), HLA-DRB1(1), ULK4(2), BCL2(2), HLA-DQB1(1), EXOC2(1), IRF4(2), EOMES(1), SP140(1), LPP(1) +18 more
0.131 0.261 9.00e-36 3.35e-34 ✓ sig. Cluster 225 →
Epilepsy Seizures
37 genes
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34 of 37 corroborated by 2+ sources
FOXG1(2), CHRNA7(3), ATP1A3(1), CPA6(2), HCN1(2), HTR1A(2), KCNQ2(5), RBFOX1(3), SCN8A(5), SLC6A1(2), ACHE(2), BCHE(2) +25 more
0.109 0.262 8.39e-36 3.13e-34 ✓ sig. —
Breast neoplasms Stomach neoplasms
67 genes
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3 of 67 corroborated by 2+ sources
DPYD(1), BMP2(1), WWOX(1), NOTCH2(1), CHEK2(2), TP53(1), CDH2(1), ARID1A(1), EGFR(1), FST(1), RARB(1), SREBF2(1) +55 more
0.089 0.219 7.65e-36 2.86e-34 ✓ sig. Cluster 5 →
Amelogenesis imperfecta Dentinogenesis imperfecta
13 genes
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13 of 13 corroborated by 2+ sources
SLC24A4(5), AMBN(5), AMELX(6), DLX3(3), ENAM(6), FAM20A(5), FAM83H(5), ITGB6(4), KLK4(5), LAMB3(5), MMP20(5), ODAPH(5) +1 more
0.448 0.813 6.65e-36 2.49e-34 ✓ sig. Cluster 366 →
Heart disease Ischemic heart disease
34 genes
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33 of 34 corroborated by 2+ sources
ABCG8(2), APOE(2), ICA1L(2), JCAD(2), KCNE2(2), LDLR(2), VEGFA(2), NOS3(2), EPO(2), F2(2), LPL(2), PON1(2) +22 more
0.120 0.233 6.64e-36 2.49e-34 ✓ sig. Cluster 139 →
Congenital ear anomaly Hereditary hearing loss
17 genes
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17 of 17 corroborated by 2+ sources
MYO15A(2), OTOF(2), PCDH15(2), TMC1(2), SLC26A4(2), COL11A2(2), MYO6(2), CDH23(2), MYO7A(2), GJB2(2), TECTA(2), LHFPL5(2) +5 more
0.262 0.548 5.92e-36 2.23e-34 ✓ sig. Cluster 26 →
Male infertility single gene azoospermia Testicular azoospermia
20 genes
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17 of 20 corroborated by 2+ sources
NR5A1(3), DMRT1(1), KLHL10(3), STAG3(2), C14orf39(2), MSH5(2), TEX15(2), GCNA(2), MOV10L1(2), TERB1(2), RNF212(2), ZSWIM7(3) +8 more
0.165 0.606 5.61e-36 2.11e-34 ✓ sig. Cluster 31 →
Global developmental delay Strabismus
26 genes
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1 of 26 corroborated by 2+ sources
FOXG1(1), NFIX(1), BFSP2(1), CACNA1A(1), FBN2(1), SIL1(1), GALC(1), SLC9A6(1), GNB1(2), POGZ(1), NALCN(1), ASXL3(1) +14 more
0.069 0.765 5.02e-36 1.89e-34 ✓ sig. —
Congenital skin anomaly Skin abnormalities
10 genes
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10 of 10 corroborated by 2+ sources
TP63(2), ERCC2(2), GORAB(2), IRF6(2), SOD2(2), FGFR2(2), CHUK(2), ZNF469(2), APAF1(2), SUPV3L1(2)
0.909 1.000 4.86e-36 1.83e-34 ✓ sig. Cluster 377 →
Esophageal disease Esophageal ulcer
13 genes
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SAMD5(1), SASH1(1), TLN2(1), SOD2(1), TRHDE(1), SPATS2L(1), ALPK3(1), ASIC2(1), CLNK(1), TECTA(1), YBX1(1), CLDN19(1) +1 more
0.406 0.929 3.83e-36 1.45e-34 ✓ sig. —
Osteonecrosis of medial femoral condyle Osteonecrosis of the femoral head
14 genes
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CAT(1), COL2A1(1), TRPV4(1), NOS3(1), F2(1), GSTT1(1), GSTM1(1), PLAT(1), F5(1), IL23R(1), ABCB1(1), MMP2(1) +2 more
0.264 1.000 3.68e-36 1.40e-34 ✓ sig. Cluster 21 →
Avascular necrosis of bone Osteonecrosis of the femoral head
14 genes
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CAT(1), COL2A1(1), TRPV4(1), NOS3(1), F2(1), GSTT1(1), GSTM1(1), PLAT(1), F5(1), IL23R(1), ABCB1(1), MMP2(1) +2 more
0.264 1.000 3.68e-36 1.40e-34 ✓ sig. Cluster 21 →
Atrial fibrillation Metabolic syndrome
189 genes
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39 of 189 corroborated by 2+ sources
SOX5(3), HSPG2(3), JMJD1C(1), RREB1(1), GATA4(4), ZFPM2(1), ATP2A2(1), BRWD1(1), CACNA1D(1), ACE(3), AFF3(1), AKAP6(3) +177 more
0.096 0.219 2.81e-36 1.07e-34 ✓ sig. —
Alzheimer disease Major depressive disorder
477 genes
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114 of 477 corroborated by 2+ sources
HNF1B(1), KANSL1(1), RERE(1), WWOX(2), ZFPM2(1), APP(6), PSEN1(6), PDE4D(2), ABT1(1), ACE(2), ADAMTS2(1), ADARB1(1) +465 more
0.129 0.243 2.09e-36 7.97e-35 ✓ sig. Cluster 2 →
Obstructive airway disease Pulmonary fibrosis
27 genes
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21 of 27 corroborated by 2+ sources
RTEL1(1), TERT(2), SERPINA1(2), ACE(2), CHRM3(2), HMOX1(2), HSPA1A(2), HSPA1B(2), IL1B(2), MBL2(1), TNF(2), IL6(2) +15 more
0.149 0.270 2.02e-36 7.71e-35 ✓ sig. Cluster 119 →
Diabetic eye disease Diabetic nephropathy type 2
15 genes
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CDKAL1(1), HMG20A(1), JAZF1(1), MACF1(1), NYAP2(1), TCF7L2(1), FTO(1), ASCL2(1), GPSM1(1), ZMIZ1(1), KCNQ1(1), SLC30A8(1) +3 more
0.288 0.833 1.80e-36 6.89e-35 ✓ sig. Cluster 73 →
Focal glomerulosclerosis Hereditary steroid-resistant nephrotic syndrome
18 genes
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18 of 18 corroborated by 2+ sources
WT1(2), ACTN4(2), ARHGAP24(2), CD2AP(2), MYO1E(2), PAX2(2), PTPRO(2), TRPC6(2), APOL1(2), PLCE1(2), ANLN(2), CRB2(2) +6 more
0.243 0.529 1.80e-36 6.89e-35 ✓ sig. Cluster 30 →
Congenital cataract Congenital total cataract
15 genes
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4 of 15 corroborated by 2+ sources
LSS(1), CRYBB2(1), PGRMC1(1), CRYAA(2), EPHA2(1), GJA8(2), HSF4(2), LIM2(1), MIP(1), GCNT2(1), FYCO1(2), AGK(1) +3 more
0.242 0.938 1.72e-36 6.62e-35 ✓ sig. Cluster 43 →
Scleroderma Systemic sclerosis
20 genes
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19 of 20 corroborated by 2+ sources
NECTIN2(2), TNIP1(3), CAV1(1), HLA-DQB1(3), ACTA2(2), IRF5(3), SIRT1(2), PSORS1C1(2), CNR2(2), STAT4(3), CNR1(2), CCN2(2) +8 more
0.146 0.714 1.55e-36 5.95e-35 ✓ sig. Cluster 25 →
Breast neoplasms Urinary bladder neoplasms
49 genes
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1 of 49 corroborated by 2+ sources
CYP17A1(1), CAT(1), TERT(1), TP53(1), ARID1A(1), EGFR(1), ESR2(1), NECTIN2(1), SRC(1), ACHE(1), BCL2(1), ESR1(2) +37 more
0.080 0.345 1.39e-36 5.36e-35 ✓ sig. Cluster 5 →
Brain injuries Brain ischemia
23 genes
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23 of 23 corroborated by 2+ sources
MPO(2), BDNF(2), ICAM1(2), IL1A(2), IL1B(2), PARP1(2), SOD2(2), TNF(2), IL6(2), RELA(2), PTGS2(2), ALB(2) +11 more
0.180 0.329 1.33e-36 5.12e-35 ✓ sig. Cluster 114 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.