Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 31
18
Diseases
501
Unique genes
0.158
Avg. similarity score
Deafness
Most-connected disease (12 links)
Disease
Pinned (dragged)
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Deafness
Isolated sensorineural deafness
Nonsyndromic hearing loss
Hereditary hearing loss
Hearing loss
Congenital ear anomaly
nonsyndromic genetic hearing loss
Usher syndrome
Meniere disease
Worster drought syndrome
autosomal recessive nonsyndromic hearing loss 102
autosomal recessive nonsyndromic hearing loss 63
hearing loss, autosomal recessive 120
Retinitis pigmentosa-deafness syndrome
Usher syndrome type 1
autosomal dominant nonsyndromic hearing loss
hearing loss, autosomal recessive 115
PDE6A-related retinopathy
Member diseases (most connected first ‐ the cluster's core)
| Disease ⇵ | Connections in cluster ⇵ | Significant partners ⇵ | Curated genes ⇵ |
|---|---|---|---|
| Deafness | 12 | 12 | 172 |
| Isolated sensorineural deafness | 12 | 12 | 119 |
| Nonsyndromic hearing loss | 12 | 12 | 118 |
| Hereditary hearing loss | 10 | 10 | 50 |
| Hearing loss | 9 | 9 | 387 |
| Congenital ear anomaly | 8 | 8 | 31 |
| nonsyndromic genetic hearing loss | 8 | 8 | 82 |
| Usher syndrome | 7 | 7 | 44 |
| Meniere disease | 5 | 5 | 67 |
| Worster drought syndrome | 4 | 4 | 1 |
| autosomal recessive nonsyndromic hearing loss 102 | 4 | 4 | 1 |
| autosomal recessive nonsyndromic hearing loss 63 | 4 | 4 | 1 |
| hearing loss, autosomal recessive 120 | 4 | 4 | 1 |
| Retinitis pigmentosa-deafness syndrome | 3 | 3 | 11 |
| Usher syndrome type 1 | 3 | 3 | 2 |
| autosomal dominant nonsyndromic hearing loss | 2 | 2 | 9 |
| hearing loss, autosomal recessive 115 | 2 | 2 | 1 |
| PDE6A-related retinopathy | 1 | 1 | 1 |
Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| MYO7A | 11 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 7 more |
| CDH23 | 10 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 6 more |
| PCDH15 | 10 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 6 more |
| USH1C | 9 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 5 more |
| MYO6 | 8 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 4 more |
| TECTA | 8 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 4 more |
| WHRN | 8 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 4 more |
| COCH | 7 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 3 more |
| COL11A2 | 7 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| ESPN | 7 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 3 more |
| GJB2 | 7 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| LHFPL5 | 7 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| MARVELD2 | 7 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| MYH14 | 7 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 3 more |
| MYO15A | 7 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| OTOA | 7 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 3 more |
| OTOF | 7 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| PJVK | 7 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| TMC1 | 7 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| TMIE | 7 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| TMPRSS3 | 7 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| WFS1 | 7 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 3 more |
| ACTG1 | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| C10ORF105 | 6 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Meniere disease and 2 more |
| CDC14A | 6 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Isolated sensorineural deafness and 2 more |
| CEACAM16 | 6 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Isolated sensorineural deafness and 2 more |
| CIB2 | 6 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 2 more |
| CLDN14 | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| COL11A1 | 6 / 18 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 2 more |
| ESRRB | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| EYA4 | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| GRHL2 | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| GSDME | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| HGF | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| KCNQ4 | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| LOXHD1 | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| LRTOMT | 6 / 18 | autosomal recessive nonsyndromic hearing loss 63, Deafness, Hearing loss, Hereditary hearing loss and 2 more |
| MYH9 | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| MYO3A | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| OTOG | 6 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, Meniere disease and 2 more |
| OTOGL | 6 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, Meniere disease and 2 more |
| POU4F3 | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| RDX | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| RIPOR2 | 6 / 18 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 2 more |
| SERPINB6 | 6 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 2 more |
| SLC26A4 | 6 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 2 more |
| STRC | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| TNC | 6 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, Meniere disease and 2 more |
| TPRN | 6 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Isolated sensorineural deafness and 2 more |
| TRIOBP | 6 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| ABCC1 | 5 / 18 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| ADCY1 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| ADGRV1 | 5 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Meniere disease and 1 more |
| ATP11A | 5 / 18 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| ATP2B2 | 5 / 18 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| CABP2 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| CCDC50 | 5 / 18 | Deafness, Hereditary hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| CLRN2 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| DCDC2 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| DIABLO | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| DMXL2 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| ELMOD3 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| EPS8 | 5 / 18 | autosomal recessive nonsyndromic hearing loss 102, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| EPS8L2 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, Meniere disease and 1 more |
| GIPC3 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| GJB3 | 5 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 1 more |
| GJB6 | 5 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 1 more |
| GRXCR1 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| GRXCR2 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| ILDR1 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| KARS1 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| LMX1A | 5 / 18 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| MET | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| MINAR2 | 5 / 18 | Deafness, Hearing loss, hearing loss, autosomal recessive 120, Isolated sensorineural deafness and 1 more |
| MSRB3 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| PDE1C | 5 / 18 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| PLS1 | 5 / 18 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| PTPRQ | 5 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| S1PR2 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| SIX1 | 5 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 1 more |
| SLC17A8 | 5 / 18 | Deafness, Hereditary hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| SLC26A5 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| SLC44A4 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| SYNE4 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| TBC1D24 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| TBCEL-TECTA | 5 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Meniere disease and 1 more |
| TJP2 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| TMTC4 | 5 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, Nonsyndromic hearing loss and 1 more |
| USH2A | 5 / 18 | Congenital ear anomaly, Deafness, Hearing loss, Retinitis pigmentosa-deafness syndrome and 1 more |
| AFG2B | 4 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, Nonsyndromic hearing loss |
| BDP1 | 4 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss |
| CD164 | 4 / 18 | autosomal dominant nonsyndromic hearing loss, Deafness, Isolated sensorineural deafness, Nonsyndromic hearing loss |
| CLIC5 | 4 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, Nonsyndromic hearing loss |
| CRYM | 4 / 18 | Deafness, Isolated sensorineural deafness, nonsyndromic genetic hearing loss, Nonsyndromic hearing loss |
| DIAPH1 | 4 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Nonsyndromic hearing loss |
| FOXI1 | 4 / 18 | Deafness, Hearing loss, Hereditary hearing loss, Nonsyndromic hearing loss |
| GPR156 | 4 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, Nonsyndromic hearing loss |
| GRAP | 4 / 18 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss |
| HOMER2 | 4 / 18 | Deafness, Isolated sensorineural deafness, nonsyndromic genetic hearing loss, Nonsyndromic hearing loss |
| KITLG | 4 / 18 | Deafness, Isolated sensorineural deafness, nonsyndromic genetic hearing loss, Nonsyndromic hearing loss |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Cytoskeleton in muscle cells | KEGG | 25 / 232 | 2.6× | 1.30e-5 | 4.19e-4 ✓ sig. |
| NCAM1 interactions | Reactome | 7 / 21 | 8.0× | 1.47e-5 | 4.63e-4 ✓ sig. |
| Signaling by PDGF | Reactome | 8 / 33 | 5.8× | 4.78e-5 | 1.23e-3 ✓ sig. |
| Collagen chain trimerization | Reactome | 9 / 44 | 4.9× | 6.84e-5 | 1.64e-3 ✓ sig. |
| Focal adhesion | KEGG | 21 / 203 | 2.5× | 1.15e-4 | 2.50e-3 ✓ sig. |
| Integrin cell surface interactions | Reactome | 12 / 81 | 3.6× | 1.25e-4 | 2.68e-3 ✓ sig. |
| Allograft rejection | KEGG | 8 / 39 | 4.9× | 1.70e-4 | 3.44e-3 ✓ sig. |
| MET activates PTK2 signaling | Reactome | 7 / 30 | 5.6× | 1.86e-4 | 3.70e-3 ✓ sig. |
| Assembly of collagen fibrils and other multimeric structures | Reactome | 9 / 51 | 4.2× | 2.26e-4 | 4.32e-3 ✓ sig. |
| ECM-receptor interaction | KEGG | 12 / 89 | 3.2× | 3.10e-4 | 5.50e-3 ✓ sig. |
| Non-integrin membrane-ECM interactions | Reactome | 6 / 24 | 6.0× | 3.62e-4 | 6.21e-3 ✓ sig. |
| Inflammatory bowel disease | KEGG | 10 / 66 | 3.6× | 3.76e-4 | 6.38e-3 ✓ sig. |
| Type I diabetes mellitus | KEGG | 8 / 44 | 4.4× | 4.08e-4 | 6.81e-3 ✓ sig. |
| Graft-versus-host disease | KEGG | 8 / 45 | 4.3× | 4.78e-4 | 7.70e-3 ✓ sig. |
| MET activates PTPN11 | Reactome | 3 / 5 | 14.4× | 6.78e-4 | 1.01e-2 ✓ sig. |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| sensory perception of sound | GO:0007605 | 91 / 162 | 21.0× | 4.30e-101 | 7.52e-96 ✓ sig. |
| auditory receptor cell stereocilium organization | GO:0060088 | 16 / 19 | 31.4× | 5.06e-23 | 1.28e-19 ✓ sig. |
| inner ear morphogenesis | GO:0042472 | 22 / 65 | 12.6× | 7.00e-19 | 9.42e-16 ✓ sig. |
| inner ear auditory receptor cell differentiation | GO:0042491 | 12 / 19 | 23.6× | 5.15e-15 | 3.53e-12 ✓ sig. |
| inner ear receptor cell differentiation | GO:0060113 | 9 / 9 | 37.3× | 6.67e-15 | 4.45e-12 ✓ sig. |
| visual perception | GO:0007601 | 31 / 215 | 5.4× | 2.00e-14 | 1.24e-11 ✓ sig. |
| inner ear development | GO:0048839 | 17 / 54 | 11.7× | 2.76e-14 | 1.65e-11 ✓ sig. |
| detection of mechanical stimulus involved in sensory perception of sound | GO:0050910 | 11 / 18 | 22.8× | 1.24e-13 | 6.71e-11 ✓ sig. |
| photoreceptor cell maintenance | GO:0045494 | 15 / 45 | 12.4× | 3.56e-13 | 1.77e-10 ✓ sig. |
| sensory perception of light stimulus | GO:0050953 | 9 / 13 | 25.8× | 4.33e-12 | 1.72e-9 ✓ sig. |
| inner ear receptor cell stereocilium organization | GO:0060122 | 11 / 25 | 16.4× | 1.46e-11 | 5.19e-9 ✓ sig. |
| equilibrioception | GO:0050957 | 6 / 6 | 37.3× | 3.61e-10 | 9.01e-8 ✓ sig. |
| auditory receptor cell development | GO:0060117 | 6 / 8 | 28.0× | 9.64e-9 | 1.66e-6 ✓ sig. |
| cochlea development | GO:0090102 | 10 / 35 | 10.7× | 1.76e-8 | 2.80e-6 ✓ sig. |
| olfactory behavior | GO:0042048 | 6 / 9 | 24.9× | 2.83e-8 | 4.18e-6 ✓ sig. |