Gene Gene information from NCBI Gene database.
Entrez ID 6772
Gene name Signal transducer and activator of transcription 1
Gene symbol STAT1
Synonyms (NCBI Gene)
CANDF7IMD31AIMD31BIMD31CISGF-3STAT91
Chromosome 2
Chromosome location 2q32.2
Summary The protein encoded by this gene is a member of the STAT protein family. In response to cytokines and growth factors, STAT family members are phosphorylated by the receptor associated kinases, and then form homo- or heterodimers that translocate to the ce
SNPs SNP information provided by dbSNP.
47
SNP ID Visualize variation Clinical significance Consequence
rs41473544 C>T Likely-benign, pathogenic, uncertain-significance Coding sequence variant, missense variant, non coding transcript variant
rs56228116 C>T Likely-benign, conflicting-interpretations-of-pathogenicity Intron variant
rs137852677 A>G Pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs137852678 A>G Pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs137852679 C>A,T Pathogenic Non coding transcript variant, synonymous variant, coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
400
miRTarBase ID miRNA Experiments Reference
MIRT000626 hsa-miR-145-5p qRT-PCRLuciferase reporter assayWestern blotMicroarray 20098684
MIRT000626 hsa-miR-145-5p Luciferase reporter assay 20098684
MIRT021229 hsa-miR-146a-5p Microarray 20110513
MIRT025278 hsa-miR-34a-5p Proteomics 21566225
MIRT040456 hsa-miR-615-3p CLASH 23622248
Transcription factors Transcription factors information provided by TRRUST V2 database.
14
Transcription factor Regulation Reference
BRCA1 Activation 17374731
CIITA Unknown 12052885
CREB5 Repression 21132541
EGF Unknown 11939722
GTF3A Unknown 12364590
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
133
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISS
GO:0000785 Component Chromatin IDA 18035482
GO:0000785 Component Chromatin ISA
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA 22002246
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600555 11362 ENSG00000115415
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P42224
Protein name Signal transducer and activator of transcription 1-alpha/beta (Transcription factor ISGF-3 components p91/p84)
Protein function Signal transducer and transcription activator that mediates cellular responses to interferons (IFNs), cytokine KITLG/SCF and other cytokines and other growth factors (PubMed:12764129, PubMed:12855578, PubMed:15322115, PubMed:23940278, PubMed:345
PDB 1BF5 , 1YVL , 2KA6 , 3WWT , 7NUF , 8D3F
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02865 STAT_int 2 120 STAT protein, protein interaction domain Domain
PF01017 STAT_alpha 139 309 STAT protein, all-alpha domain Family
PF02864 STAT_bind 321 458 STAT protein, DNA binding domain Domain
PF00017 SH2 573 657 SH2 domain Domain
PF12162 STAT1_TAZ2bind 715 739 STAT1 TAZ2 binding domain Motif
Sequence
Sequence length 750
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
40
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome Pathogenic; Likely pathogenic rs763759889, rs2124996723, rs1382612689, rs2124996603, rs2125062900, rs2125029430, rs2125075054, rs2125000306, rs587777628, rs587777629, rs587777630, rs387906758, rs2470465165, rs1417484130, rs1559011859
View all (37 more)
RCV001387601
RCV002031476
RCV001953772
RCV002046903
RCV001943557
View all (51 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Chronic mucocutaneous candidiasis Pathogenic rs2125062092, rs387906759 RCV001667870
RCV000825629
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Immunodeficiency 31B Pathogenic; Likely pathogenic rs763759889, rs2125048161, rs2124996723, rs1382612689, rs2124996603, rs2125062900, rs2125029430, rs2125075054, rs2125000306, rs587777630, rs2125075036, rs387906758, rs2470533091, rs1417484130, rs1559011859
View all (32 more)
RCV001387601
RCV001824236
RCV002031476
RCV001953772
RCV002046903
View all (44 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Inherited Immunodeficiency Diseases Pathogenic; Likely pathogenic rs587777630, rs387906763, rs1574636674, rs1574657735, rs1574657762, rs1574672718 RCV001027623
RCV001027626
RCV001027624
RCV001027628
RCV001027625
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARTHRITIS, EXPERIMENTAL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARTHRITIS, RHEUMATOID CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOMA, HEPATOCELLULAR CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Ablepharon Ablepharon BEFREE 29540554
★☆☆☆☆
Found in Text Mining only
Achondroplasia Achondroplasia Pubtator 19802676 Associate
★☆☆☆☆
Found in Text Mining only
Achondroplasia Achondroplasia BEFREE 27064282
★☆☆☆☆
Found in Text Mining only
Acoustic Neuroma Acoustic Neuroma BEFREE 31120176
★☆☆☆☆
Found in Text Mining only
Acute Erythroblastic Leukemia Erythroblastic Leukemia BEFREE 11843291
★☆☆☆☆
Found in Text Mining only
Acute Erythroblastic Leukemia Erythroblastic Leukemia LHGDN 11843291
★☆☆☆☆
Found in Text Mining only
Acute Kidney Tubular Necrosis Renal tubular necrosis BEFREE 30403164
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 9498707
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 28123535, 8634413
★☆☆☆☆
Found in Text Mining only
Acute Megakaryocytic Leukemias Megakaryocytic Leukemia BEFREE 28546428
★☆☆☆☆
Found in Text Mining only