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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Major depressive disorder Scoliosis
266 genes
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57 of 266 corroborated by 2+ sources
COMT(2), WWOX(1), COL2A1(2), PDE4D(2), SH2B3(1), ETV6(1), AMPD3(1), GFAP(1), ADARB2(1), AKAP6(1), ALCAM(1), ANK3(1) +254 more
0.098 0.258 4.05e-32 1.32e-30 ✓ sig. Cluster 2 →
Attention deficit hyperactivity disorder Scoliosis
183 genes
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14 of 183 corroborated by 2+ sources
COMT(3), GBE1(1), CDH2(4), ADGRL2(1), AFF3(1), AKAP6(1), ALCAM(1), ANK3(1), ANO4(1), ARFGEF2(1), ASCC2(1), BNC2(1) +171 more
0.094 0.177 4.01e-32 1.31e-30 ✓ sig. Cluster 2 →
46,xy gonadal dysgenesis Gonadal dysgenesis
12 genes
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11 of 12 corroborated by 2+ sources
BMP15(2), BNC1(2), FSHR(2), MRPS22(1), NR5A1(3), NUP107(2), POLR3H(2), PSMC3IP(2), SPIDR(2), SRY(3), DHH(2), DHX37(2)
0.375 0.800 3.74e-32 1.22e-30 ✓ sig. Cluster 38 →
Hemorrhagic disease Thrombocytopenia
17 genes
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4 of 17 corroborated by 2+ sources
JMJD1C(1), THPO(4), HBS1L(1), THADA(1), JAK2(1), TPM4(2), ARHGEF3(1), BAK1(1), CDKN2A(1), TUBB1(2), SIRPA(1), PNPLA3(1) +5 more
0.118 0.810 3.71e-32 1.22e-30 ✓ sig. Cluster 33 →
Pharyngeal disorder Upper respiratory tract disorder
13 genes
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IKZF1(1), TET2(1), TNFRSF13B(1), NEK6(1), IL7R(1), LTBR(1), NFKB1(1), KRT19(1), FBXO33(1), ADAM23(1), KLHL1(1), ZBTB7A(1) +1 more
0.333 0.650 3.63e-32 1.19e-30 ✓ sig. Cluster 137 →
Color vision deficiency Major depressive disorder
254 genes
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51 of 254 corroborated by 2+ sources
SOX5(1), CASZ1(1), DMRT1(1), WWOX(1), PDE4D(2), DOCK6(1), AMPD3(1), ASB3(1), AUTS2(1), C12orf42(1), C6orf118(1), CACNA1A(1) +242 more
0.095 0.263 3.40e-32 1.12e-30 ✓ sig. Cluster 2 →
Cardiomegaly Congestive heart failure
27 genes
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27 of 27 corroborated by 2+ sources
ATP2A2(2), AGT(2), PIK3CG(2), REN(2), NOS3(2), GSK3B(2), HMOX1(2), IL1B(2), SOD2(2), STAT3(2), TNF(2), POMC(2) +15 more
0.114 0.321 3.28e-32 1.08e-30 ✓ sig. —
Immunodeficiency Severe combined immunodeficiency
22 genes
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21 of 22 corroborated by 2+ sources
CARD11(6), LAT(6), ZAP70(3), TFRC(3), CORO1A(7), IL7R(6), CD3E(6), PTPRC(5), CD247(5), PRKDC(7), CD3D(6), STK4(3) +10 more
0.130 0.431 2.33e-32 7.69e-31 ✓ sig. Cluster 10 →
Loeys-dietz syndrome Thoracic aortic aneurysm and aortic dissection
13 genes
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10 of 13 corroborated by 2+ sources
FBN1(5), COL5A1(1), FBN2(3), TGFB2(7), SMAD3(7), COL3A1(1), MYH11(5), TGFBR1(7), TGFBR2(7), MYLK(5), TGFB3(6), SMAD2(7) +1 more
0.289 0.813 2.25e-32 7.42e-31 ✓ sig. Cluster 12 →
familial thoracic aortic aneurysm and aortic dissection Thoracic aortic aneurysm and aortic dissection
12 genes
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12 of 12 corroborated by 2+ sources
FBN1(5), PRKG1(4), TGFB2(4), FLNA(3), BGN(4), FOXE3(5), MYH11(5), LOX(5), MYLK(5), MFAP5(4), TGFB3(4), MAT2A(4)
0.286 1.000 2.14e-32 7.08e-31 ✓ sig. Cluster 12 →
Asthma Endometriosis
99 genes
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40 of 99 corroborated by 2+ sources
GATA4(1), PTEN(3), ETV6(1), RUNX1(1), AFF3(1), C6orf118(1), CDK2AP1(1), CLIC4(1), COL12A1(1), DDX6(1), ERBB4(1), ETS1(1) +87 more
0.074 0.263 2.10e-32 6.94e-31 ✓ sig. —
Connective tissue disease Thoracic aortic aneurysm and aortic dissection
20 genes
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12 of 20 corroborated by 2+ sources
FBN1(5), NOTCH1(2), COL5A1(1), FBN2(3), PRKG1(4), FLNA(3), SMAD3(5), ACTA2(5), COL1A1(1), COL3A1(1), MYH11(5), NDE1(1) +8 more
0.144 0.488 1.76e-32 5.86e-31 ✓ sig. Cluster 12 →
autosomal recessive limb-girdle muscular dystrophy Muscular dystrophy
13 genes
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13 of 13 corroborated by 2+ sources
SGCA(2), HMGCR(2), TRAPPC11(2), ANO5(2), SGCD(2), DYSF(2), SGCG(2), TCAP(2), POPDC3(2), CAPN3(2), JAG2(2), SGCB(2) +1 more
0.245 0.929 1.52e-32 5.06e-31 ✓ sig. Cluster 14 →
Post-traumatic stress disorder Substance abuse
53 genes
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4 of 53 corroborated by 2+ sources
SOX5(1), BPTF(1), ADCY8(2), AFF3(1), ARHGAP15(1), CNTNAP5(1), CTTNBP2(1), DCC(1), EFNA5(1), FOXP1(1), FOXP2(1), GRIA1(2) +41 more
0.079 0.261 1.35e-32 4.51e-31 ✓ sig. Cluster 2 →
Hyperglycemia Hyperinsulinism
17 genes
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16 of 17 corroborated by 2+ sources
INS(2), FBN1(2), NOS3(2), GCG(2), INSR(5), LEP(2), IL6(2), GPX1(2), CCL2(2), CD40(2), FCGR3B(1), COL3A1(2) +5 more
0.218 0.405 1.24e-32 4.12e-31 ✓ sig. Cluster 36 →
Autoimmune thyroid disease Graves disease
27 genes
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14 of 27 corroborated by 2+ sources
IFIH1(3), BTNL2(2), FAM76B(1), HLA-DQA1(2), HLA-DRB1(2), ICOS(1), PRICKLE1(1), PRSS36(1), RHOH(1), IL10(2), HLA-DQB1(2), BACH2(1) +15 more
0.124 0.273 1.02e-32 3.41e-31 ✓ sig. Cluster 39 →
Deficiency anemia Vitamin b12 deficiency
11 genes
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FUT2(1), TCN2(1), CUBN(1), TCN1(1), LRRC43(1), CD320(1), FUT6(1), MMAA(1), FUT3(1), MMUT(1), OOSP3(1)
0.440 1.000 8.67e-33 2.90e-31 ✓ sig. Cluster 106 →
Diabetes mellitus type 2 Osteoarthritis
282 genes
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54 of 282 corroborated by 2+ sources
SOX5(1), HMGA2(1), NF1(1), KANSL1(1), CYP11B2(2), MASP1(1), COL2A1(2), FGFR3(1), LTBP3(3), PIK3R1(3), ADK(1), BRWD1(1) +270 more
0.080 0.386 8.67e-33 2.90e-31 ✓ sig. Cluster 2 →
Conduction disorder of the heart Wolff-parkinson-white syndrome
15 genes
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JUP(1), RBM20(1), TRPM4(1), DSP(1), CACNA1C(1), MYH6(1), CASQ2(1), FLNC(1), KCNH2(1), KCNQ1(1), RYR2(1), SCN5A(1) +3 more
0.246 0.625 8.30e-33 2.79e-31 ✓ sig. Cluster 4 →
Congenital central hypoventilation syndrome Haddad syndrome
9 genes
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7 of 9 corroborated by 2+ sources
RET(2), BDNF(2), GDNF(3), PAH(1), EDN3(3), LBX1(2), MYO1H(3), ASCL1(1), PHOX2B(4)
0.900 1.000 7.47e-33 2.51e-31 ✓ sig. Cluster 387 →
Crigler-najjar syndrome Lucey-driscoll syndrome
9 genes
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1 of 9 corroborated by 2+ sources
UGT1A10(1), UGT1A8(1), UGT1A9(1), UGT1A1(6), UGT1A6(1), UGT1A3(1), UGT1A4(1), UGT1A5(1), UGT1A7(1)
0.900 1.000 7.47e-33 2.51e-31 ✓ sig. Cluster 260 →
Dystonia musculorum deformans Genetic torsion dystonia
9 genes
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2 of 9 corroborated by 2+ sources
COL6A3(1), GCH1(1), THAP1(1), TOR1A(2), TUBB4A(1), TAF1(1), GNAL(1), HPCA(2), SGCE(1)
0.900 1.000 7.47e-33 2.51e-31 ✓ sig. Cluster 167 →
Epilepsy of infancy with migrating focal seizures Malignant migrating partial seizures of infancy
9 genes
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9 of 9 corroborated by 2+ sources
KCNQ2(3), SCN1A(3), SCN2A(2), SLC12A5(3), TBC1D24(2), KCNT1(2), PLCB1(3), PIGA(3), SLC25A22(3)
0.900 1.000 7.47e-33 2.51e-31 ✓ sig. —
Respiratory system disease Sclerosing cholangitis
42 genes
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DOCK3(1), EMSY(1), ETS1(1), HLA-DQA1(1), HLA-DRB1(1), IKZF1(1), IL6R(1), JAZF1(1), PLCL1(1), PTCD2(1), TSPAN14(1), TTC33(1) +30 more
0.098 0.183 6.49e-33 2.20e-31 ✓ sig. —
Cardiofaciocutaneous syndrome Noonan syndrome
12 genes
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11 of 12 corroborated by 2+ sources
BRAF(7), KRAS(8), NRAS(7), SHOC2(7), RAF1(7), PTPN11(7), SOS1(7), MAP2K1(8), HRAS(3), MAP2K2(8), RIT1(6), SNAPC5(1)
0.316 1.000 5.02e-33 1.70e-31 ✓ sig. Cluster 42 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.