Gene Gene information from NCBI Gene database.
Entrez ID 7043
Gene name Transforming growth factor beta 3
Gene symbol TGFB3
Synonyms (NCBI Gene)
ARVDARVD1LDS5RNHFTGF-beta3
Chromosome 14
Chromosome location 14q24.3
Summary This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate
SNPs SNP information provided by dbSNP.
28
SNP ID Visualize variation Clinical significance Consequence
rs143229915 C>G,T Uncertain-significance, conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, missense variant
rs387906514 G>A Pathogenic Genic downstream transcript variant, 3 prime UTR variant
rs398122984 C>T Pathogenic Coding sequence variant, genic downstream transcript variant, missense variant
rs587777617 C>T Likely-pathogenic, pathogenic Coding sequence variant, missense variant
rs767548724 C>G Likely-pathogenic Splice acceptor variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
158
miRTarBase ID miRNA Experiments Reference
MIRT005910 hsa-miR-29a-3p qRT-PCR 21169019
MIRT047598 hsa-miR-10a-5p CLASH 23622248
MIRT000095 hsa-miR-29b-3p Luciferase reporter assayqRT-PCR 23354167
MIRT000095 hsa-miR-29b-3p Luciferase reporter assayqRT-PCR 23354167
MIRT734385 hsa-miR-365a-3p qRT-PCRELISA 34185228
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
HIF1A Activation 16611863
HIF1A Repression 10831118
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
72
GO ID Ontology Definition Evidence Reference
GO:0001666 Process Response to hypoxia IDA 18156205
GO:0001666 Process Response to hypoxia IEA
GO:0001701 Process In utero embryonic development ISS
GO:0005114 Function Type II transforming growth factor beta receptor binding IDA 11157754, 18243111
GO:0005114 Function Type II transforming growth factor beta receptor binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
190230 11769 ENSG00000119699
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P10600
Protein name Transforming growth factor beta-3 proprotein [Cleaved into: Latency-associated peptide (LAP); Transforming growth factor beta-3 (TGF-beta-3)]
Protein function Transforming growth factor beta-3 proprotein: Precursor of the Latency-associated peptide (LAP) and Transforming growth factor beta-3 (TGF-beta-3) chains, which constitute the regulatory and active subunit of TGF-beta-3, respectively. {ECO:00002
PDB 1KTZ , 1TGJ , 1TGK , 2PJY , 3EO1 , 4UM9 , 8V52 , 8VS6 , 8VSB , 9B9F , 9FK5
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00688 TGFb_propeptide 23 281 TGF-beta propeptide Family
PF00019 TGF_beta 314 411 Transforming growth factor beta like domain Domain
Sequence
Sequence length 412
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
36
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Arrhythmogenic right ventricular dysplasia 1 Pathogenic; Likely pathogenic rs2035295129, rs1060502827, rs767548724, rs1555360047, rs2035287906 RCV001333115
RCV002481450
RCV002060544
RCV002499009
RCV004813705
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Developmental disorder Likely pathogenic; Pathogenic rs1060502827 RCV003126747
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Familial thoracic aortic aneurysm and aortic dissection Likely pathogenic; Pathogenic rs2503023443, rs2504093549, rs1060502826, rs796051885, rs2504102952, rs2504096267, rs1057523647, rs1060502827, rs1555360368, rs1555360229, rs1555360047, rs2035418540, rs2035180096 RCV002326078
RCV002340692
RCV002449826
RCV001171230
RCV003486422
View all (8 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Loeys-Dietz syndrome Likely pathogenic; Pathogenic rs1060502826, rs1555360229 RCV004017991
RCV005431682
RCV005418216
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Arrhythmogenic right ventricular cardiomyopathy Uncertain significance; Conflicting classifications of pathogenicity ClinVar
ClinGen, GWAS catalog
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
ARRHYTHMOGENIC RIGHT VENTRICULAR DYSPLASIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARRHYTHMOGENIC RIGHT VENTRICULAR DYSPLASIA, FAMILIAL, 1 CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Brugada syndrome Uncertain significance ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adrenal Hyperplasia Congenital Congenital adrenal hyperplasia Pubtator 24380766 Stimulate
★☆☆☆☆
Found in Text Mining only
Androgen Insensitivity Syndrome Androgen insensitivity syndrome Pubtator 25313366 Stimulate
★☆☆☆☆
Found in Text Mining only
Angioedemas, Hereditary Angioedema BEFREE 29623491
★☆☆☆☆
Found in Text Mining only
Anodontia Anodontia Pubtator 12733956 Associate
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Aortic aneurysm Pubtator 25835445 Associate
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Aortic Aneurysm BEFREE 26184463
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Thoracic Thoracic aortic aneurysm Pubtator 36356561 Associate
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm, Abdominal Aortic Aneurysm BEFREE 19897194, 25835445
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm, Abdominal Aortic Aneurysm HPO_DG
★☆☆☆☆
Found in Text Mining only
Aortic Dissection Aortic dissection Pubtator 25835445 Associate
★☆☆☆☆
Found in Text Mining only