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Gene Gene information from NCBI Gene database.
Entrez ID 10382
Gene name Tubulin beta 4A class IVa
Gene symbol TUBB4A
Synonyms (NCBI Gene)
DYT4TUBB4beta-5
Chromosome 19
Chromosome location 19p13.3
Summary This gene encodes a member of the beta tubulin family. Beta tubulins are one of two core protein families (alpha and beta tubulins) that heterodimerize and assemble to form microtubules. Mutations in this gene cause hypomyelinating leukodystrophy-6 and au
SNPs SNP information provided by dbSNP.
33 Show/Hide all (33)
SNP ID Visualize variation Clinical significance Consequence
rs369467354 C>T Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs483352809 C>T Pathogenic Coding sequence variant, missense variant
rs587776983 G>A,C,T Pathogenic 5 prime UTR variant, coding sequence variant, synonymous variant, missense variant
rs587777074 C>G,T Pathogenic Coding sequence variant, missense variant
rs587777428 C>T Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
32 Show/Hide all (32)
miRTarBase ID miRNA Experiments Reference
MIRT022751 hsa-miR-124-3p Microarray 18668037
MIRT036536 hsa-miR-1226-3p CLASH 23622248
MIRT513393 hsa-miR-3974 PAR-CLIP 23446348
MIRT513392 hsa-miR-488-5p PAR-CLIP 23446348
MIRT513390 hsa-miR-150-5p PAR-CLIP 23446348
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
33 Show/Hide all (33)
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0000226 Process Microtubule cytoskeleton organization IBA
GO:0000278 Process Mitotic cell cycle IBA
GO:0003924 Function GTPase activity IEA
GO:0005200 Function Structural constituent of cytoskeleton IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602662 20774 ENSG00000104833
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P04350
Protein name Tubulin beta-4A chain (Tubulin 5 beta) (Tubulin beta-4 chain)
Protein function Tubulin is the major constituent of microtubules, a cylinder consisting of laterally associated linear protofilaments composed of alpha- and beta-tubulin heterodimers. Microtubules grow by the addition of GTP-tubulin dimers to the microtubule en
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00091 Tubulin 3 → 212 Tubulin/FtsZ family, GTPase domain Domain
PF03953 Tubulin_C 261 → 383 Tubulin C-terminal domain Domain
Tissue specificity TISSUE SPECIFICITY: Major isotype in brain, where it represents 46% of all beta-tubulins. In the brain, highest expression levels in the cerebellum, followed by putamen and white matter. Moderate levels in testis. Very low levels, if any, in other tissues
Sequence
Sequence length 444
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
KEGG Pathway Reactome Pathway
Phagosome Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane
Gap junction MHC class II antigen presentation
Motor proteins Separation of Sister Chromatids
Alzheimer disease Resolution of Sister Chromatid Cohesion
Parkinson disease Regulation of PLK1 Activity at G2/M Transition
Amyotrophic lateral sclerosis HSP90 chaperone cycle for steroid hormone receptors (SHR)
Huntington disease Loss of Nlp from mitotic centrosomes
Prion disease Recruitment of mitotic centrosome proteins and complexes
Pathways of neurodegeneration - multiple diseases Loss of proteins required for interphase microtubule organization from the centrosome
Pathogenic Escherichia coli infection Recruitment of NuMA to mitotic centrosomes
Salmonella infection Recycling pathway of L1
  Hedgehog 'off' state
  Cilium Assembly
  Anchoring of the basal body to the plasma membrane
  Intraflagellar transport
  RHO GTPases activate IQGAPs
  RHO GTPases Activate Formins
  COPI-mediated anterograde transport
  COPI-dependent Golgi-to-ER retrograde traffic
  COPI-independent Golgi-to-ER retrograde traffic
  Mitotic Prometaphase
  The role of GTSE1 in G2/M progression after G2 checkpoint
  AURKA Activation by TPX2
  Carboxyterminal post-translational modifications of tubulin
  HCMV Early Events
  Aggrephagy
  EML4 and NUDC in mitotic spindle formation
  Sealing of the nuclear envelope (NE) by ESCRT-III
  Kinesins
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
27
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Show/Hide Causal Diseases (10)
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the nervous system Likely pathogenic; Pathogenic rs483352809 RCV001814029
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Auditory neuropathy spectrum disorder Likely pathogenic; Pathogenic rs886039470 RCV003984834
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cerebral palsy Likely pathogenic; Pathogenic rs587777428, rs767399782 RCV001795219
RCV001004001
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Global developmental delay Likely pathogenic; Pathogenic rs587777428 RCV002463648
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hypomyelinating leukodystrophy 6 Likely pathogenic; Pathogenic rs2145244590, rs587777428, rs587777429, rs2145244734, rs587777467, rs587777468, rs886041008, rs2512754593, rs761635539, rs797045074, rs767399782, rs2512753619, rs1914525410, rs886039470, rs886041021
View all (16 more)
RCV001663402
RCV000122736
RCV000122737
RCV002014654
RCV000128409
View all (30 more)
★★★★★
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Show/Hide Unknown Diseases (17)
Phenotype Name Clinical Significance Source Reference Evidence Score
ATROPHY/DEGENERATION AFFECTING THE CEREBELLUM — Disgenet —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Brown syndrome Uncertain significance ClinVar —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BROWN TENDON SHEATH SYNDROME — Disgenet —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Classic medulloblastoma Uncertain significance ClinVar —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL NEUROLOGIC ANOMALIES — Disgenet —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Show/Hide Text Mining Associations (89)
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★★★★★
★☆☆☆☆
Found in Text Mining only
Anodontia Anodontia Pubtator 23582646, 28655586, 28973395, 35275727, 37003180 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Atrophy Atrophy Pubtator 34514881 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Basal Ganglia Diseases Basal ganglia disease Pubtator 24785942 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Blepharospasm Blepharospasm HPO_DG
★★★★★
★☆☆☆☆
Found in Text Mining only
Brain Diseases Brain disease Pubtator 28973395 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Cerebellar atrophy Cerebellar atrophy BEFREE 25085639
★★★★★
★☆☆☆☆
Found in Text Mining only
Cerebellar atrophy Cerebellar atrophy HPO_DG
★★★★★
★☆☆☆☆
Found in Text Mining only
Cerebellar Diseases Cerebellar diseases Pubtator 25085639 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Cerebral Palsy Cerebral palsy CLINVAR_DG
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)