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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cholelithiasis Progressive intrahepatic cholestasis
12 genes
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12 of 12 corroborated by 2+ sources
MYO5B(5), VPS33B(3), NR1H4(5), ATP8B1(6), TJP2(6), ABCB11(5), ABCB4(6), SLC51A(4), KIF12(4), USP53(5), SEMA7A(4), ZFYVE19(3)
0.085 0.923 2.33e-24 5.46e-23 ✓ sig. —
Arrhythmogenic right ventricular dysplasia Left ventricular noncompaction cardiomyopathy
10 genes
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CTNNA3(1), DSG2(1), JUP(1), PKP2(1), DSP(1), RYR2(1), SCN5A(1), LDB3(1), MYH7(1), TMEM43(1)
0.233 0.714 2.28e-24 5.36e-23 ✓ sig. Cluster 4 →
Deficiency anemia Vitamin b deficiency
9 genes
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1 of 9 corroborated by 2+ sources
FUT2(2), TCN2(1), CUBN(1), TCN1(1), CD320(1), FUT6(1), MMAA(1), MMUT(1), OOSP3(1)
0.321 0.750 2.14e-24 5.04e-23 ✓ sig. Cluster 106 →
Majewski syndrome Short rib dysplasia-polydactyly syndrome
9 genes
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8 of 9 corroborated by 2+ sources
EVC2(1), NEK1(3), IFT80(2), DYNC2H1(4), DYNC2LI1(2), IFT172(2), TTC21B(2), WDR35(3), TRAF3IP1(2)
0.321 0.750 2.14e-24 5.04e-23 ✓ sig. Cluster 22 →
Behcet disease Graves disease
20 genes
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14 of 20 corroborated by 2+ sources
HLA-DRB1(2), SERPINE1(2), ICAM1(2), IL10(4), IL1B(2), IL2(1), IL4(2), TNF(1), HLA-DQB1(2), VDR(1), TGFB1(2), CTLA4(3) +8 more
0.108 0.202 1.95e-24 4.60e-23 ✓ sig. —
B-cell acute lymphoblastic leukemia Biliary cholangitis
19 genes
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2 of 19 corroborated by 2+ sources
ARHGAP31(1), IKZF1(1), RIN3(1), CCR6(1), CAPSL(1), CEP43(1), GSDMB(1), NFKB1(2), ZPBP2(1), STAT4(2), IKZF3(1), TCAP(1) +7 more
0.101 0.317 1.83e-24 4.32e-23 ✓ sig. —
Non-small cell lung carcinoma Skin neoplasms
23 genes
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5 of 23 corroborated by 2+ sources
TERT(2), BNC2(1), FOXP1(1), HERC2(1), HLA-DQA1(1), HLA-DRB1(1), TRPS1(1), OCA2(1), RALY(1), IRF4(1), KRT5(1), BACH2(1) +11 more
0.097 0.200 1.82e-24 4.29e-23 ✓ sig. Cluster 29 →
Macular dystrophy Stargardt disease
12 genes
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6 of 12 corroborated by 2+ sources
ABCA4(4), CNGB3(2), BEST1(2), PRPH2(3), CRB1(1), CRX(1), PROM1(5), GPHN(1), EYS(1), CERKL(1), MFSD8(4), RDH12(1)
0.197 0.429 1.68e-24 3.98e-23 ✓ sig. Cluster 7 →
Ureterolithiasis Urolithiasis
10 genes
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ALPL(1), BCAS3(1), PDILT(1), ABCG2(1), RGS14(1), BCAS1(1), CYP24A1(1), KLK15(1), RSPH14(1), PKN1(1)
0.143 1.000 1.65e-24 3.91e-23 ✓ sig. Cluster 178 →
Accessory skin tag Cutis laxa
8 genes
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8 of 8 corroborated by 2+ sources
ALDH18A1(6), ATP6V0A2(8), ELN(7), EFEMP2(7), FBLN5(6), ATP6V1A(8), ATP6V1E1(7), PYCR1(7)
0.381 1.000 1.61e-24 3.81e-23 ✓ sig. Cluster 80 →
Adult myoclonic epilepsy Familial adult myoclonic epilepsy
7 genes
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7 of 7 corroborated by 2+ sources
RAPGEF2(5), TNRC6A(5), ADRA2B(2), CNTN2(3), MARCHF6(5), SAMD12(5), YEATS2(4)
0.700 0.875 1.57e-24 3.73e-23 ✓ sig. Cluster 357 →
Jarcho-levin syndrome Spondylocostal dysostosis
7 genes
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7 of 7 corroborated by 2+ sources
TBX6(5), DLL3(5), HES7(6), LFNG(6), MESP2(5), RIPPLY2(7), DMRT2(2)
0.700 0.875 1.57e-24 3.73e-23 ✓ sig. —
Melanoma Neuroblastoma
37 genes
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6 of 37 corroborated by 2+ sources
TERT(5), TP53(2), ARHGAP24(1), HLA-DQA1(1), HLA-DRB1(1), SNX29(1), SPIRE2(1), TNF(1), DOCK8(2), KRT5(1), PTPN14(2), NRAS(1) +25 more
0.067 0.245 1.40e-24 3.32e-23 ✓ sig. —
Parkinson disease Schizophrenia
182 genes
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98 of 182 corroborated by 2+ sources
KANSL1(1), RERE(1), WWOX(2), CP(2), PDGFRB(1), GFAP(2), AGAP1(1), ALCAM(1), ALDH1A2(3), APOE(3), CACNA2D3(1), CAMK1D(1) +170 more
0.063 0.344 1.26e-24 3.00e-23 ✓ sig. Cluster 2 →
Biliary cholangitis Systemic sclerosis
24 genes
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10 of 24 corroborated by 2+ sources
ARHGAP31(1), DDX6(1), DGKQ(1), ELMO1(1), HLA-DQA1(2), HLA-DRA(1), HLA-DQB1(2), ATG5(1), HLA-DPB1(1), CCR6(2), GSDMB(1), IL12RB2(1) +12 more
0.095 0.188 1.24e-24 2.95e-23 ✓ sig. —
Multinodular goiter Toxic nodular goiter
10 genes
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NFIA(1), BCAS3(1), INSR(1), TG(1), FAM227B(1), ITPK1(1), PRDM11(1), MBIP(1), FGF7(1), MICOS10(1)
0.278 0.588 1.23e-24 2.93e-23 ✓ sig. —
Aortic aneurysm Congenital contractural arachnodactyly
13 genes
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13 of 13 corroborated by 2+ sources
SKI(2), FBN1(3), FBN2(7), SLC2A10(2), TGFB2(3), THSD4(4), SMAD3(2), COL3A1(2), EFEMP2(2), TGFBR1(2), TGFBR2(2), LOX(5) +1 more
0.165 0.448 1.23e-24 2.93e-23 ✓ sig. Cluster 12 →
Graves disease Hypersensitivity
18 genes
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18 of 18 corroborated by 2+ sources
HLA-DQA1(3), HLA-DRB1(3), IL10(2), IL1B(2), IL4(2), MTHFR(2), TNF(2), IL6(2), CD40LG(2), HLA-DQB1(3), TGFB1(2), IFNG(2) +6 more
0.118 0.257 1.23e-24 2.93e-23 ✓ sig. —
Metabolic syndrome Osteoarthritis
148 genes
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11 of 148 corroborated by 2+ sources
SOX5(1), ADK(1), BRWD1(1), ADARB1(1), AGAP1(1), ALDH1A2(2), APOC1(1), APOE(1), ARHGAP15(1), ASB3(1), BANK1(1), BNC2(1) +136 more
0.078 0.203 1.18e-24 2.83e-23 ✓ sig. Cluster 2 →
Nephronophthisis Senior-loken syndrome
10 genes
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9 of 10 corroborated by 2+ sources
NPHP4(7), NPHP3(7), NPHP1(6), CEP290(6), WDR19(5), SDCCAG8(5), IQCB1(6), RLIG1(1), CEP164(5), INVS(8)
0.227 0.769 1.17e-24 2.81e-23 ✓ sig. Cluster 8 →
Atopic dermatitis Behcet disease
18 genes
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9 of 18 corroborated by 2+ sources
IL10(4), IL1B(3), IL2(1), IL4(2), MBL2(1), TLR4(2), TNF(1), VDR(1), TGFB1(1), AHR(2), CTLA4(1), CYP1A1(2) +6 more
0.117 0.273 1.16e-24 2.78e-23 ✓ sig. Cluster 16 →
Attention deficit hyperactivity disorder Color vision deficiency
160 genes
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10 of 160 corroborated by 2+ sources
SOX5(1), HMGA2(1), CDH2(4), CACNA1D(1), ADGRL2(1), ARID1B(1), AUTS2(1), C6orf118(1), CACNA2D3(1), CACNB2(1), CAMK1D(1), CCDC171(1) +148 more
0.084 0.166 1.11e-24 2.67e-23 ✓ sig. Cluster 2 →
Schizophrenia Scoliosis
297 genes
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118 of 297 corroborated by 2+ sources
COMT(3), TBX1(2), WWOX(2), COL2A1(2), PDE4D(2), PRKG2(1), SH2B3(2), ETV6(1), ADK(2), JAG1(1), GFAP(1), ADGRB3(1) +285 more
0.091 0.288 1.10e-24 2.65e-23 ✓ sig. Cluster 2 →
Hyperlipidemia Ischemic heart disease
26 genes
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23 of 26 corroborated by 2+ sources
ABCA1(2), ABCG8(2), APOB(3), APOE(3), LDLR(3), LIPC(6), MLXIPL(2), TRIB1(2), VEGFA(2), NOS3(2), ADRB3(2), HMGCR(2) +14 more
0.091 0.184 1.01e-24 2.43e-23 ✓ sig. —
Dejerine-sottas disease Distal spinal muscular atrophy
12 genes
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2 of 12 corroborated by 2+ sources
AARS1(1), TRPV4(1), DYNC1H1(1), NEFL(1), SH3TC2(1), HSPB1(1), PLEKHG5(1), GARS1(1), HSPB8(1), MARS1(1), PMP22(3), PRX(3)
0.207 0.387 1.00e-24 2.42e-23 ✓ sig. Cluster 15 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.