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Gene Gene information from NCBI Gene database.
Entrez ID 3115
Gene name Major histocompatibility complex, class II, DP beta 1
Gene symbol HLA-DPB1
Synonyms (NCBI Gene)
DPB1HLA-DPHLA-DP1BHLA-DPB
Chromosome 6
Chromosome location 6p21.32
Summary HLA-DPB belongs to the HLA class II beta chain paralogues. This class II molecule is a heterodimer consisting of an alpha (DPA) and a beta chain (DPB), both anchored in the membrane. It plays a central role in the immune system by presenting peptides deri
miRNA miRNA information provided by mirtarbase database.
61 Show/Hide all (61)
miRTarBase ID miRNA Experiments Reference
MIRT1048385 hsa-miR-103a CLIP-seq
MIRT1048386 hsa-miR-107 CLIP-seq
MIRT1048387 hsa-miR-1286 CLIP-seq
MIRT1048388 hsa-miR-15a CLIP-seq
MIRT1048389 hsa-miR-15b CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
5
Transcription factor Regulation Reference
CIITA Unknown 11889043
RFX1 Unknown 11889043
RFX5 Unknown 11258423
RFXANK Unknown 11258423
RFXAP Unknown 11258423
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
44 Show/Hide all (44)
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane TAS
GO:0002250 Process Adaptive immune response IEA
GO:0002376 Process Immune system process IEA
GO:0002503 Process Peptide antigen assembly with MHC class II protein complex IBA
GO:0002504 Process Antigen processing and presentation of peptide or polysaccharide antigen via MHC class II IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
142858 4940 ENSG00000223865
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P04440
Protein name HLA class II histocompatibility antigen, DP beta 1 chain (HLA class II histocompatibility antigen, DP(W4) beta chain) (MHC class II antigen DPB1)
Protein function Binds peptides derived from antigens that access the endocytic route of antigen presenting cells (APC) and presents them on the cell surface for recognition by the CD4 T-cells. The peptide binding cleft accommodates peptides of 10-30 residues. T
PDB 3LQZ , 4P4K , 4P4R , 4P57 , 4P5K , 4P5M , 7T2A , 7T2B , 7T2C , 7T2D
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00969 MHC_II_beta 42 → 114 Class II histocompatibility antigen, beta domain Domain
PF07654 C1-set 126 → 207 Immunoglobulin C1-set domain Domain
Sequence
Sequence length 258
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
KEGG Pathway Reactome Pathway
Phagosome Downstream TCR signaling
Cell adhesion molecules Phosphorylation of CD3 and TCR zeta chains
Antigen processing and presentation Translocation of ZAP-70 to Immunological synapse
Hematopoietic cell lineage Generation of second messenger molecules
Th1 and Th2 cell differentiation MHC class II antigen presentation
Th17 cell differentiation PD-1 signaling
Intestinal immune network for IgA production Interferon gamma signaling
Type I diabetes mellitus  
Leishmaniasis  
Toxoplasmosis  
Staphylococcus aureus infection  
Tuberculosis  
Influenza A  
Human T-cell leukemia virus 1 infection  
Herpes simplex virus 1 infection  
Epstein-Barr virus infection  
Asthma  
Autoimmune thyroid disease  
Inflammatory bowel disease  
Systemic lupus erythematosus  
Rheumatoid arthritis  
Allograft rejection  
Graft-versus-host disease  
Viral myocarditis  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
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Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Show/Hide Unknown Diseases (53)
Phenotype Name Clinical Significance Source Reference Evidence Score
ANGIOEDEMA — CTD 15784113
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANTI-BASEMENT MEMBRANE GLOMERULONEPHRITIS — Disgenet —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANTI-NEUTROPHIL ANTIBODY ASSOCIATED VASCULITIS — GWAS catalog 28029757, 36530128
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANTI-TOPOISOMERASE-I-ANTIBODY-POSITIVE SYSTEMIC SCLERODERMA — GWAS catalog 38296975
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARTHRITIS, RHEUMATOID — CTD 17956852, 22286218
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations