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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Myeloid leukemia Promyelocytic leukemia
12 genes
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5 of 12 corroborated by 2+ sources
WT1(1), CEBPA(3), IDH2(1), NRAS(1), DNMT3A(2), IDH1(1), KIT(2), AQP9(1), PTPN11(1), FLT3(2), NPM1(2), CD44(1)
0.063 0.240 4.13e-14 5.50e-13 ✓ sig. Cluster 53 →
Lymphocytic b-cell leukemia Lymphocytic leukemia
10 genes
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10 of 10 corroborated by 2+ sources
FARP2(2), BCL2(2), IRF4(2), SP140(2), ACOXL(2), QPCT(2), LEF1(2), BMF(2), C11orf21(2), PRKD2(2)
0.071 0.294 4.09e-14 5.45e-13 ✓ sig. Cluster 225 →
Iga nephropathy Sclerosing cholangitis
23 genes
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6 of 23 corroborated by 2+ sources
ANKRD55(1), ETS1(1), HLA-DQA1(1), HLA-DQB3(1), HLA-DRA(1), HLA-DRB1(1), IKZF1(1), TTC33(1), PLAU(2), OSMR(1), HLA-DQB1(2), FCGR2A(1) +11 more
0.056 0.113 3.98e-14 5.31e-13 ✓ sig. Cluster 28 →
Aortic disease Marfan syndrome
7 genes
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7 of 7 corroborated by 2+ sources
CAT(2), SOD2(2), SOD1(2), MMP9(2), MMP2(2), LAMC1(2), SMAD4(2)
0.125 0.368 3.90e-14 5.20e-13 ✓ sig. —
Anxiety disorder Memory disorders
12 genes
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12 of 12 corroborated by 2+ sources
APP(2), HTR1A(2), HTR7(2), MAPT(2), NPY(2), DRD2(3), SLC6A3(2), SLC6A4(3), CNR1(2), MAGI2(2), MDK(2), MIF(2)
0.065 0.235 3.86e-14 5.16e-13 ✓ sig. —
Fatty liver Hepatomegaly
11 genes
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10 of 11 corroborated by 2+ sources
LDLR(2), LEP(2), NFE2L2(2), PPARA(2), AKT1(2), IFNA2(1), CYP1B1(2), MET(2), NR1H4(2), NR1I2(2), LEPR(2)
0.078 0.190 3.83e-14 5.11e-13 ✓ sig. —
Congenital hydrocephalus Hydrocephalus
6 genes
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6 of 6 corroborated by 2+ sources
MPDZ(5), SMARCC1(2), WDR81(3), L1CAM(4), CCDC88C(5), TRIM71(4)
0.171 0.429 3.71e-14 4.95e-13 ✓ sig. Cluster 293 →
Nervous system disease Seizures
13 genes
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13 of 13 corroborated by 2+ sources
FOXG1(2), APOE(2), KCNQ2(5), SCN8A(5), ACHE(2), BDNF(2), NOS1(2), NGF(2), FOS(2), CHRNA4(2), PTGS2(2), ABCC2(2) +1 more
0.066 0.191 3.70e-14 4.95e-13 ✓ sig. —
Spastic ataxia Spinocerebellar ataxia
12 genes
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11 of 12 corroborated by 2+ sources
CACNA1A(6), CACNA1G(5), DAB1(4), SETX(6), ITPR1(7), SYNE1(3), PIK3R5(2), AFG3L2(6), CCDC88C(6), TUBB6(1), ELOVL4(5), PUM1(3)
0.074 0.171 3.61e-14 4.83e-13 ✓ sig. Cluster 79 →
Male infertility globozoospermia Spermatogenic failure
7 genes
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7 of 7 corroborated by 2+ sources
PPP2R3C(4), SPATA16(4), SEPTIN4(2), DPY19L2(7), ZPBP(4), CATSPERT(3), GGN(4)
0.060 0.778 3.60e-14 4.82e-13 ✓ sig. —
Dermatologic disorder Pulmonary fibrosis
12 genes
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10 of 12 corroborated by 2+ sources
HSPA1B(2), IL1A(1), IL1B(2), TNF(2), IL6(2), PTGS2(1), IL1RN(2), CXCL2(2), CCL4(2), OGG1(2), PTX3(2), SKIL(2)
0.073 0.176 3.55e-14 4.76e-13 ✓ sig. —
Dravet syndrome Generalized epilepsy with febrile seizures plus
5 genes
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5 of 5 corroborated by 2+ sources
GABRG2(4), SCN1A(8), SCN1B(7), SCN2A(2), SCN9A(2)
0.250 0.625 3.39e-14 4.54e-13 ✓ sig. Cluster 47 →
Chloracne Thalassemia
5 genes
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5 of 5 corroborated by 2+ sources
HBA1(2), HBA2(2), GSTM1(2), HBB(2), HBD(2)
0.147 1.000 3.29e-14 4.42e-13 ✓ sig. Cluster 72 →
Cockayne syndrome Uv-sensitive syndrome
4 genes
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2 of 4 corroborated by 2+ sources
ERCC8(8), NDUFAF2(1), ERCC6(7), PGBD3(1)
0.500 0.800 3.20e-14 4.30e-13 ✓ sig. —
46,xx ovotesticular disorder of sex development 46,xx sex reversal
4 genes
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4 of 4 corroborated by 2+ sources
NR5A1(2), SOX3(2), SOX9(2), SRY(2)
0.500 0.800 3.20e-14 4.30e-13 ✓ sig. Cluster 38 →
Male infertility Male infertility single gene azoospermia
14 genes
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13 of 14 corroborated by 2+ sources
NR5A1(4), DMRT1(2), TDRD9(2), CFTR(3), DNAH10(2), MOV10L1(2), SYCP3(2), PIWIL2(2), HORMAD1(2), PNLDC1(2), SHOC1(2), M1AP(1) +2 more
0.068 0.131 3.07e-14 4.13e-13 ✓ sig. Cluster 31 →
Mood disorder Psychotic disorders
21 genes
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6 of 21 corroborated by 2+ sources
TBX1(1), ANK3(1), TCF4(2), BDNF(2), GLUL(1), MAOA(1), HTR1B(2), TGFB1(1), CACNA1C(1), CRHR1(1), TRPM2(1), NR3C1(2) +9 more
0.052 0.168 3.05e-14 4.10e-13 ✓ sig. —
Carney-stratakis syndrome Paraganglioma
4 genes
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4 of 4 corroborated by 2+ sources
SDHB(6), SDHD(6), SDHA(2), SDHC(6)
0.444 1.000 2.99e-14 4.02e-13 ✓ sig. Cluster 81 →
Carney-stratakis syndrome Pheochromocytoma/paraganglioma syndrome
4 genes
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4 of 4 corroborated by 2+ sources
SDHB(6), SDHD(5), SDHA(5), SDHC(6)
0.444 1.000 2.99e-14 4.02e-13 ✓ sig. Cluster 81 →
Hemophagocytic lymphohistiocytosis Hereditary hemophagocytic lymphohistiocytosis
4 genes
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4 of 4 corroborated by 2+ sources
PRF1(7), UNC13D(8), STX11(6), STXBP2(7)
0.444 1.000 2.99e-14 4.02e-13 ✓ sig. —
Aicardi goutieres syndrome Interferonopathy
4 genes
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4 of 4 corroborated by 2+ sources
RNASEH2A(3), RNASEH2B(3), RNASEH2C(2), SAMHD1(3)
0.444 1.000 2.99e-14 4.02e-13 ✓ sig. Cluster 150 →
Bare lymphocyte syndrome MHC class II deficiency
4 genes
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4 of 4 corroborated by 2+ sources
CIITA(3), RFX5(2), RFXANK(2), RFXAP(2)
0.444 1.000 2.99e-14 4.02e-13 ✓ sig. —
Aortic dissection Ehlers-danlos syndrome
7 genes
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6 of 7 corroborated by 2+ sources
FBN1(2), SMAD3(2), COL1A1(7), COL3A1(7), TGFBR1(2), TGFBR2(2), LOX(1)
0.125 0.389 2.93e-14 3.96e-13 ✓ sig. —
Anterior segment dysgenesis Axenfeld-rieger syndrome
5 genes
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4 of 5 corroborated by 2+ sources
COL4A1(2), FOXC1(7), PAX6(4), PITX2(7), IFT140(1)
0.200 0.833 2.80e-14 3.78e-13 ✓ sig. —
Corneal dystrophy Polymorphous corneal dystrophy
5 genes
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5 of 5 corroborated by 2+ sources
COL8A2(5), OVOL2(3), VSX1(2), GRHL2(3), ZEB1(5)
0.152 1.000 2.79e-14 3.78e-13 ✓ sig. Cluster 75 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.