Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 75
13
Diseases
816
Unique genes
0.076
Avg. similarity score
Anorexia nervosa
Most-connected disease (7 links)
Disease
Pinned (dragged)
Node size = connections within this cluster · edge thickness = similarity strength · hover an edge for its details ·
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Anorexia nervosa
Tourette syndrome
Obsessive-compulsive disorder
Eating disorder
Generalized anxiety disorder
Psychiatric disorders
cardiomyopathy, dilated, 2f
neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities
Charcot-Marie-Tooth disease, axonal, type 2FF
Congenital thrombotic disease
Early-onset distal myopathy
Tolchin-le caignec syndrome
Vascular dementia
Member diseases (most connected first ‐ the cluster's core)
| Disease ⇵ | Connections in cluster ⇵ | Significant partners ⇵ | Curated genes ⇵ |
|---|---|---|---|
| Anorexia nervosa | 7 | 7 | 251 |
| Tourette syndrome | 6 | 6 | 258 |
| Obsessive-compulsive disorder | 5 | 5 | 234 |
| Eating disorder | 4 | 4 | 72 |
| Generalized anxiety disorder | 4 | 4 | 40 |
| Psychiatric disorders | 4 | 4 | 219 |
| cardiomyopathy, dilated, 2f | 4 | 4 | 1 |
| neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities | 3 | 3 | 1 |
| Charcot-Marie-Tooth disease, axonal, type 2FF | 1 | 1 | 1 |
| Congenital thrombotic disease | 1 | 1 | 1 |
| Early-onset distal myopathy | 1 | 1 | 1 |
| Tolchin-le caignec syndrome | 1 | 1 | 1 |
| Vascular dementia | 1 | 1 | 128 |
Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| TMEM106B | 6 / 13 | Anorexia nervosa, Eating disorder, Generalized anxiety disorder, Psychiatric disorders and 2 more |
| ANKS1B | 5 / 13 | Anorexia nervosa, Generalized anxiety disorder, Obsessive-compulsive disorder, Psychiatric disorders and 1 more |
| BAG5 | 5 / 13 | Anorexia nervosa, cardiomyopathy, dilated, 2f, Obsessive-compulsive disorder, Psychiatric disorders and 1 more |
| LRFN5 | 5 / 13 | Anorexia nervosa, Generalized anxiety disorder, Obsessive-compulsive disorder, Psychiatric disorders and 1 more |
| AKAP6 | 4 / 13 | Anorexia nervosa, Eating disorder, Obsessive-compulsive disorder, Tourette syndrome |
| CACNA1C | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| CCDC68 | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| CSMD1 | 4 / 13 | Anorexia nervosa, Eating disorder, Obsessive-compulsive disorder, Tourette syndrome |
| DCC | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| DRD2 | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| ERCC4 | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| FURIN | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| GRIN2A | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome, Vascular dementia |
| IGSF9B | 4 / 13 | Anorexia nervosa, Generalized anxiety disorder, Obsessive-compulsive disorder, Tourette syndrome |
| ITIH3 | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| KIZ | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| MAD1L1 | 4 / 13 | Anorexia nervosa, Generalized anxiety disorder, Obsessive-compulsive disorder, Tourette syndrome |
| MGMT | 4 / 13 | Anorexia nervosa, Eating disorder, Generalized anxiety disorder, Vascular dementia |
| NALF1 | 4 / 13 | Anorexia nervosa, Eating disorder, Psychiatric disorders, Vascular dementia |
| PCLO | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| PLCL1 | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome, Vascular dementia |
| PTPRF | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| RGS6 | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| RIMS1 | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| SHMT2 | 4 / 13 | Anorexia nervosa, neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities, Obsessive-compulsive disorder, Tourette syndrome |
| SORCS3 | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| SPAG16 | 4 / 13 | Anorexia nervosa, Generalized anxiety disorder, Obsessive-compulsive disorder, Tourette syndrome |
| TCF4 | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| TFAP2B | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| THSD7A | 4 / 13 | Anorexia nervosa, Eating disorder, Psychiatric disorders, Tourette syndrome |
| TMPRSS5 | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| VRK2 | 4 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| ACADS | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| ACTR5 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| ADGRL4 | 3 / 13 | Anorexia nervosa, Eating disorder, Generalized anxiety disorder |
| AMBRA1 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| ARL3 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| ASB3 | 3 / 13 | Anorexia nervosa, Eating disorder, Generalized anxiety disorder |
| ATP2A2 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| BANK1 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| BCL11B | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| BRAF | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| C6ORF118 | 3 / 13 | Obsessive-compulsive disorder, Psychiatric disorders, Vascular dementia |
| C8ORF90 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| CACNA1I | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| CACNB2 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| CAMTA1 | 3 / 13 | Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| CHRNA3 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| CNNM4 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| CNTN4 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| CTNND1 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| DGKI | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| ENOX1 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| EPHX2 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| ESR2 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| FADS2 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| FAM120A | 3 / 13 | Anorexia nervosa, Generalized anxiety disorder, Tourette syndrome |
| FGFR1 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| FOXP1 | 3 / 13 | Anorexia nervosa, Eating disorder, Tourette syndrome |
| FTCDNL1 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| GID4 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| GMIP | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| GRIK3 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| GRM3 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| GSDME | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| HCN1 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| HSPE1-MOB4 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| IFI44 | 3 / 13 | Anorexia nervosa, Eating disorder, Generalized anxiety disorder |
| IMMP2L | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| KCNB1 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| KDM3B | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| L3MBTL2 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| LMAN2L | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| LSAMP | 3 / 13 | Obsessive-compulsive disorder, Psychiatric disorders, Tourette syndrome |
| MOB4 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| MPHOSPH9 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| MRPL33 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| MYO18A | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| NAA11 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| NAA40 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| NCKIPSD | 3 / 13 | Anorexia nervosa, Eating disorder, Obsessive-compulsive disorder |
| NGEF | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| NPAS3 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| NRGN | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| NT5C2 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| OLFM4 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| OSBPL3 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| PDE4B | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| PMFBP1 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| PPP1R13B | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| PPP1R16B | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| PPP2R2B | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| PPP3CA | 3 / 13 | Anorexia nervosa, Eating disorder, Psychiatric disorders |
| PXDNL | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| RBFOX1 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| RBKS | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| RCOR2 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| RERE | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| RORA | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
| RPS19BP1 | 3 / 13 | Anorexia nervosa, Obsessive-compulsive disorder, Tourette syndrome |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| cAMP signaling pathway | KEGG | 29 / 226 | 1.9× | 6.88e-4 | 1.02e-2 ✓ sig. |
| ERBB2 Regulates Cell Motility | Reactome | 5 / 15 | 4.9× | 2.42e-3 | 2.62e-2 ✓ sig. |
| Dopamine receptors | Reactome | 3 / 5 | 8.8× | 2.82e-3 | 2.94e-2 ✓ sig. |
| SHC1 events in ERBB2 signaling | Reactome | 5 / 17 | 4.3× | 4.45e-3 | 4.06e-2 ✓ sig. |
| Signaling by ERBB4 | Reactome | 4 / 11 | 5.4× | 4.75e-3 | 4.23e-2 ✓ sig. |
| Pre-NOTCH Processing in Golgi | Reactome | 3 / 6 | 7.4× | 5.35e-3 | 4.57e-2 ✓ sig. |
| Serotonin receptors | Reactome | 4 / 12 | 4.9× | 6.74e-3 | 5.32e-2 |
| Nectin/Necl trans heterodimerization | Reactome | 3 / 7 | 6.3× | 8.89e-3 | 6.39e-2 |
| ERBB2 Activates PTK6 Signaling | Reactome | 4 / 13 | 4.5× | 9.22e-3 | 6.53e-2 |
| Effects of PIP2 hydrolysis | Reactome | 5 / 20 | 3.7× | 9.41e-3 | 6.62e-2 |
| Adherens junction | KEGG | 13 / 93 | 2.1× | 9.90e-3 | 6.82e-2 |
| GnRH secretion | KEGG | 10 / 65 | 2.3× | 1.18e-2 | 7.57e-2 |
| Regulation of TP53 Activity through Association with Co-factors | Reactome | 4 / 14 | 4.2× | 1.22e-2 | 7.73e-2 |
| SHC1 events in ERBB4 signaling | Reactome | 4 / 14 | 4.2× | 1.22e-2 | 7.73e-2 |
| GRB2 events in ERBB2 signaling | Reactome | 4 / 14 | 4.2× | 1.22e-2 | 7.73e-2 |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| chemical synaptic transmission | GO:0007268 | 31 / 236 | 3.0× | 4.46e-8 | 6.15e-6 ✓ sig. |
| modulation of chemical synaptic transmission | GO:0050804 | 21 / 121 | 4.0× | 5.85e-8 | 7.73e-6 ✓ sig. |
| axonogenesis | GO:0007409 | 21 / 125 | 3.8× | 1.05e-7 | 1.25e-5 ✓ sig. |
| postsynaptic modulation of chemical synaptic transmission | GO:0099170 | 9 / 25 | 8.2× | 6.00e-7 | 5.46e-5 ✓ sig. |
| negative regulation of synaptic transmission, glutamatergic | GO:0051967 | 6 / 10 | 13.7× | 1.23e-6 | 9.78e-5 ✓ sig. |
| response to xenobiotic stimulus | GO:0009410 | 27 / 248 | 2.5× | 1.23e-5 | 6.14e-4 ✓ sig. |
| endocytosis | GO:0006897 | 25 / 223 | 2.6× | 1.55e-5 | 7.40e-4 ✓ sig. |
| synaptic membrane adhesion | GO:0099560 | 8 / 29 | 6.3× | 2.42e-5 | 1.04e-3 ✓ sig. |
| cardiac muscle hypertrophy in response to stress | GO:0014898 | 6 / 15 | 9.2× | 2.43e-5 | 1.04e-3 ✓ sig. |
| synaptic transmission, dopaminergic | GO:0001963 | 6 / 15 | 9.2× | 2.43e-5 | 1.04e-3 ✓ sig. |
| neuron projection development | GO:0031175 | 20 / 161 | 2.8× | 2.48e-5 | 1.06e-3 ✓ sig. |
| calcium-mediated signaling | GO:0019722 | 16 / 114 | 3.2× | 3.55e-5 | 1.39e-3 ✓ sig. |
| nervous system development | GO:0007399 | 50 / 631 | 1.8× | 3.61e-5 | 1.41e-3 ✓ sig. |
| regulation of synaptic plasticity | GO:0048167 | 12 / 69 | 4.0× | 3.94e-5 | 1.50e-3 ✓ sig. |
| positive regulation of MAPK cascade | GO:0043410 | 24 / 224 | 2.5× | 4.79e-5 | 1.74e-3 ✓ sig. |