Gene Gene information from NCBI Gene database.
Entrez ID 83605
Gene name CCM2 scaffold protein
Gene symbol CCM2
Synonyms (NCBI Gene)
C7orf22OSMPP10187
Chromosome 7
Chromosome location 7p13
Summary This gene encodes a scaffold protein that functions in the stress-activated p38 Mitogen-activated protein kinase (MAPK) signaling cascade. The protein interacts with SMAD specific E3 ubiquitin protein ligase 1 (also known as SMURF1) via a phosphotyrosine
SNPs SNP information provided by dbSNP.
35
SNP ID Visualize variation Clinical significance Consequence
rs137852841 C>T Pathogenic Non coding transcript variant, coding sequence variant, stop gained
rs137852843 T>G Pathogenic Non coding transcript variant, intron variant, coding sequence variant, missense variant
rs755800734 C>T Pathogenic Intron variant, coding sequence variant, non coding transcript variant, stop gained
rs765548101 C>G,T Pathogenic Non coding transcript variant, coding sequence variant, stop gained, synonymous variant
rs886041157 C>T Pathogenic Stop gained, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
96
miRTarBase ID miRNA Experiments Reference
MIRT871135 hsa-miR-1323 CLIP-seq
MIRT871136 hsa-miR-19a CLIP-seq
MIRT871137 hsa-miR-19b CLIP-seq
MIRT871138 hsa-miR-2277-3p CLIP-seq
MIRT871139 hsa-miR-3607-5p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
25
GO ID Ontology Definition Evidence Reference
GO:0001568 Process Blood vessel development IEA
GO:0001570 Process Vasculogenesis IBA
GO:0001570 Process Vasculogenesis IEA
GO:0001570 Process Vasculogenesis IMP 14740320
GO:0001701 Process In utero embryonic development IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607929 21708 ENSG00000136280
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9BSQ5
Protein name Cerebral cavernous malformations 2 protein (Malcavernin)
Protein function Component of the CCM signaling pathway which is a crucial regulator of heart and vessel formation and integrity. May act through the stabilization of endothelial cell junctions (By similarity). May function as a scaffold protein for MAP2K3-MAP3K
PDB 4FQN , 4TVQ , 4WJ7 , 4Y5O , 4YKC , 4YKD , 4YL6
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16545 CCM2_C 287 387 Cerebral cavernous malformation protein, harmonin-homology Domain
Sequence
MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS
DYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAHQLPGHLTQEHDAVLSLSAYNV
KLAWRDGEDIILRVPIHDIAAVSYVRDDAAHLVVLKTAQDPGISPSQSLCAESSRGLSAG
SLSESAVGPVEACCLVILAAESKVAAEELCCLLGQVFQVVYTESTIDFLDRAIFDGASTP
THHLSLHSDDSSTKVDIKETYEVEASTFCFPESVDVGGASPHSKTISESELSASATELLQ
DYMLTLRTKLSSQEIQQFAALLHEYRNGASIHEFCINLRQLYGDSRKFLLLGLRPFIPEK
DSQHFENFLETIGVKDGRGIITDSFGR
HRRALSTTSSSTTNGNRATGSSDDRSAPSEGDE
WDRMISDISSDIEALGCSMDQDSA
Sequence length 444
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
34
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cavernous hemangioma Pathogenic rs765548101 RCV000414908
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
CCM2-related disorder Likely pathogenic; Pathogenic rs797044623, rs2486113704, rs759104121, rs755800734, rs1562912441, rs767248510 RCV004751328
RCV003421112
RCV003983350
RCV003389649
RCV004751677
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cerebral cavernous angioma Likely pathogenic rs1797327591 RCV001265075
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cerebral cavernous malformation Likely pathogenic; Pathogenic rs2128747719, rs2128729172 RCV001728077
RCV001848603
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CAVERNOUS HEMANGIOMA OF BRAIN Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CEREBRAL CAVERNOUS MALFORMATIONS 2 CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 10732762, 18491353, 28729401
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 11095488
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 19755102, 22782892
★☆☆☆☆
Found in Text Mining only
Allergic rhinitis (disorder) Allergic rhinitis BEFREE 16369169
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 40306441 Stimulate
★☆☆☆☆
Found in Text Mining only
Anaplasia Anaplasia BEFREE 22056139, 24322910, 30582455
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 28053127
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Abdominal Aortic aneurysm Pubtator 17321344 Associate
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 30273401, 31461490
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis BEFREE 12794844, 24767864, 26304992, 28093521
★☆☆☆☆
Found in Text Mining only