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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Erythrocytosis Polycythemia
9 genes
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8 of 9 corroborated by 2+ sources
HBA1(6), EPO(5), EPOR(3), HBB(5), JAK2(4), EPAS1(5), VHL(3), EGLN1(5), INSL6(1)
0.375 0.692 4.93e-25 1.20e-23 ✓ sig. Cluster 105 →
Heterotaxy syndrome Situs inversus
10 genes
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9 of 10 corroborated by 2+ sources
PKD1L1(4), ZIC3(5), CIROP(3), MNS1(3), TEX9(1), MMP21(5), CFAP53(4), ACVR2B(5), CFAP52(4), NODAL(6)
0.303 0.500 5.76e-25 1.41e-23 ✓ sig. Cluster 46 →
Congestive heart failure Hypotension
21 genes
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21 of 21 corroborated by 2+ sources
INS(2), CAT(2), ACE(2), AGT(2), REN(2), GCG(2), IL1B(2), TNF(2), PRL(2), AVP(2), IL6(2), POMC(2) +9 more
0.093 0.313 5.82e-25 1.42e-23 ✓ sig. —
Bardet-biedl syndrome Nephronophthisis
14 genes
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13 of 14 corroborated by 2+ sources
MKKS(7), NPHP4(7), RPGRIP1L(2), NPHP3(6), TMEM67(4), NPHP1(7), CEP290(5), IFT172(5), TTC21B(5), WDR19(5), SDCCAG8(7), BBS9(5) +2 more
0.163 0.350 5.98e-25 1.46e-23 ✓ sig. Cluster 8 →
Diabetic neuropathy Kidney failure
36 genes
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28 of 36 corroborated by 2+ sources
INS(2), CAT(2), NOTCH2(2), COL4A3(2), ACE(2), AGT(2), MME(2), SERPINE1(2), TCF7L2(1), VEGFA(2), NOS3(2), EPO(2) +24 more
0.080 0.154 6.53e-25 1.59e-23 ✓ sig. —
Arrhythmogenic right ventricular cardiomyopathy Restrictive cardiomyopathy
12 genes
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8 of 12 corroborated by 2+ sources
DMD(1), DSP(4), MYH6(1), FLNC(3), DES(4), MYH7(3), MYL3(3), TTN(2), ACTC1(1), MYL2(1), TNNI3(3), TNNT2(3)
0.188 0.522 7.36e-25 1.79e-23 ✓ sig. Cluster 4 →
Maturity-onset diabetes of the young monogenic diabetes
8 genes
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8 of 8 corroborated by 2+ sources
INS(2), ABCC8(2), HNF4A(2), KCNJ11(2), GCK(2), HNF1A(2), PDX1(2), NEUROD1(3)
0.500 0.800 7.40e-25 1.80e-23 ✓ sig. Cluster 36 →
Congenital contractural arachnodactyly Loeys-dietz syndrome
10 genes
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10 of 10 corroborated by 2+ sources
FBN1(2), FBN2(7), TGFB2(6), SMAD3(4), COL3A1(2), TGFBR1(6), TGFBR2(7), TGFB3(5), SMAD2(8), IPO8(3)
0.278 0.625 7.74e-25 1.88e-23 ✓ sig. Cluster 12 →
Chiari-frommel syndrome Hyperproinsulinemia
7 genes
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6 of 7 corroborated by 2+ sources
PRL(2), DRD2(2), GAD1(2), PRLR(3), GNRH1(2), LHB(2), PGR(1)
0.700 1.000 8.85e-25 2.14e-23 ✓ sig. Cluster 325 →
Coronary artery disease Migraine
95 genes
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28 of 95 corroborated by 2+ sources
CASZ1(1), PRDM16(3), SKI(1), JMJD1C(1), SERPINA1(1), ADARB2(1), BAZ1B(1), C1GALT1(1), CDH13(1), CPS1(1), ERBB4(1), ETV1(1) +83 more
0.065 0.235 8.95e-25 2.17e-23 ✓ sig. Cluster 78 →
Diffuse gastric adenocarcinoma Gastric cancer
14 genes
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CDH13(1), CHLSN(1), LAT(1), ABO(1), PSCA(1), HTT(1), TJP3(1), LY6K(1), MTX1(1), GPR78(1), THBS3(1), HMX1(1) +2 more
0.063 0.875 9.99e-25 2.42e-23 ✓ sig. —
Dejerine-sottas disease Distal spinal muscular atrophy
12 genes
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2 of 12 corroborated by 2+ sources
AARS1(1), TRPV4(1), DYNC1H1(1), NEFL(1), SH3TC2(1), HSPB1(1), PLEKHG5(1), GARS1(1), HSPB8(1), MARS1(1), PMP22(3), PRX(3)
0.207 0.387 1.00e-24 2.42e-23 ✓ sig. Cluster 15 →
Distal spinal muscular atrophy Hypertrophic neuropathy
12 genes
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2 of 12 corroborated by 2+ sources
AARS1(1), TRPV4(1), DYNC1H1(1), NEFL(1), SH3TC2(1), HSPB1(1), PLEKHG5(1), GARS1(1), HSPB8(1), MARS1(1), PMP22(2), PRX(2)
0.207 0.387 1.00e-24 2.42e-23 ✓ sig. Cluster 15 →
Distal spinal muscular atrophy Roussy-levy syndrome
12 genes
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1 of 12 corroborated by 2+ sources
AARS1(1), TRPV4(1), DYNC1H1(1), NEFL(1), SH3TC2(1), HSPB1(1), PLEKHG5(1), GARS1(1), HSPB8(1), MARS1(1), PMP22(4), PRX(1)
0.207 0.387 1.00e-24 2.42e-23 ✓ sig. Cluster 15 →
Hyperlipidemia Ischemic heart disease
26 genes
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23 of 26 corroborated by 2+ sources
ABCA1(2), ABCG8(2), APOB(3), APOE(3), LDLR(3), LIPC(6), MLXIPL(2), TRIB1(2), VEGFA(2), NOS3(2), ADRB3(2), HMGCR(2) +14 more
0.091 0.184 1.01e-24 2.43e-23 ✓ sig. —
Schizophrenia Scoliosis
297 genes
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118 of 297 corroborated by 2+ sources
COMT(3), TBX1(2), WWOX(2), COL2A1(2), PDE4D(2), PRKG2(1), SH2B3(2), ETV6(1), ADK(2), JAG1(1), GFAP(1), ADGRB3(1) +285 more
0.091 0.288 1.10e-24 2.65e-23 ✓ sig. Cluster 2 →
Attention deficit hyperactivity disorder Color vision deficiency
160 genes
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10 of 160 corroborated by 2+ sources
SOX5(1), HMGA2(1), CDH2(4), CACNA1D(1), ADGRL2(1), ARID1B(1), AUTS2(1), C6orf118(1), CACNA2D3(1), CACNB2(1), CAMK1D(1), CCDC171(1) +148 more
0.084 0.166 1.11e-24 2.67e-23 ✓ sig. Cluster 2 →
Atopic dermatitis Behcet disease
18 genes
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9 of 18 corroborated by 2+ sources
IL10(4), IL1B(3), IL2(1), IL4(2), MBL2(1), TLR4(2), TNF(1), VDR(1), TGFB1(1), AHR(2), CTLA4(1), CYP1A1(2) +6 more
0.117 0.273 1.16e-24 2.78e-23 ✓ sig. Cluster 16 →
Nephronophthisis Senior-loken syndrome
10 genes
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9 of 10 corroborated by 2+ sources
NPHP4(7), NPHP3(7), NPHP1(6), CEP290(6), WDR19(5), SDCCAG8(5), IQCB1(6), RLIG1(1), CEP164(5), INVS(8)
0.227 0.769 1.17e-24 2.81e-23 ✓ sig. Cluster 8 →
Metabolic syndrome Osteoarthritis
148 genes
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11 of 148 corroborated by 2+ sources
SOX5(1), ADK(1), BRWD1(1), ADARB1(1), AGAP1(1), ALDH1A2(2), APOC1(1), APOE(1), ARHGAP15(1), ASB3(1), BANK1(1), BNC2(1) +136 more
0.078 0.203 1.18e-24 2.83e-23 ✓ sig. Cluster 2 →
Graves disease Hypersensitivity
18 genes
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18 of 18 corroborated by 2+ sources
HLA-DQA1(3), HLA-DRB1(3), IL10(2), IL1B(2), IL4(2), MTHFR(2), TNF(2), IL6(2), CD40LG(2), HLA-DQB1(3), TGFB1(2), IFNG(2) +6 more
0.118 0.257 1.23e-24 2.93e-23 ✓ sig. —
Multinodular goiter Toxic nodular goiter
10 genes
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NFIA(1), BCAS3(1), INSR(1), TG(1), FAM227B(1), ITPK1(1), PRDM11(1), MBIP(1), FGF7(1), MICOS10(1)
0.278 0.588 1.23e-24 2.93e-23 ✓ sig. —
Aortic aneurysm Congenital contractural arachnodactyly
13 genes
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13 of 13 corroborated by 2+ sources
SKI(2), FBN1(3), FBN2(7), SLC2A10(2), TGFB2(3), THSD4(4), SMAD3(2), COL3A1(2), EFEMP2(2), TGFBR1(2), TGFBR2(2), LOX(5) +1 more
0.165 0.448 1.23e-24 2.93e-23 ✓ sig. Cluster 12 →
Biliary cholangitis Systemic sclerosis
24 genes
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10 of 24 corroborated by 2+ sources
ARHGAP31(1), DDX6(1), DGKQ(1), ELMO1(1), HLA-DQA1(2), HLA-DRA(1), HLA-DQB1(2), ATG5(1), HLA-DPB1(1), CCR6(2), GSDMB(1), IL12RB2(1) +12 more
0.095 0.188 1.24e-24 2.95e-23 ✓ sig. —
Parkinson disease Schizophrenia
182 genes
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98 of 182 corroborated by 2+ sources
KANSL1(1), RERE(1), WWOX(2), CP(2), PDGFRB(1), GFAP(2), AGAP1(1), ALCAM(1), ALDH1A2(3), APOE(3), CACNA2D3(1), CAMK1D(1) +170 more
0.063 0.344 1.26e-24 3.00e-23 ✓ sig. Cluster 2 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.