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Cluster 67

13 diseases · 22 shared-gene connections
13 Diseases
623 Unique genes
0.110 Avg. similarity score
Diabetic eye disease Most-connected disease (7 links)
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Disease Searched: Diabetic nephropathy type 2 Pinned (dragged)
Node size = connections within this cluster · edge thickness = similarity strength · hover an edge for its details · click a node to select it and show its pairs below (double-click or Ctrl/⌘-click opens the disease page) · drag a node to pin it in place · scroll/pinch to zoom.

Member diseases (most connected first ‐ the cluster's core)

Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)

Gene ⇵ Member diseases ⇵ Linked diseases
CDKAL1 8 / 13 Body weight, Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2 and 4 more
FTO 7 / 13 Body weight, Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2 and 3 more
IGF2BP2 7 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2, Diabetic neuropathy and 3 more
KCNQ1 7 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2, Diabetic neuropathy and 3 more
TCF7L2 7 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2, Diabetic neuropathy and 3 more
HLA-DQB1 6 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic neuropathy, Diabetic polyneuropathy and 2 more
JAZF1 6 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2, Diabetic neuropathy and 2 more
MACF1 6 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2, Diabetic neuropathy and 2 more
NYAP2 6 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2, Diabetic neuropathy and 2 more
SLC30A8 6 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2, Diabetic neuropathy and 2 more
WFS1 6 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2, Diabetic neuropathy and 2 more
ADCY5 5 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic neuropathy, Diabetic retinopathy and 1 more
ASCL2 5 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2, Diabetic neuropathy and 1 more
CCND2 5 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic neuropathy, Diabetic retinopathy and 1 more
COBLL1 5 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2, Diabetic neuropathy and 1 more
GPSM1 5 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2, Diabetic neuropathy and 1 more
HMG20A 5 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2, Diabetic neuropathy and 1 more
ZMIZ1 5 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic nephropathy type 2, Diabetic neuropathy and 1 more
ADIPOQ 4 / 13 Diabetes mellitus, Diabetic neuropathy, Diabetic retinopathy, Gestational diabetes
ANK1 4 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic neuropathy, Diabetic retinopathy
ARPIN-AP3S2 4 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic neuropathy, Diabetic retinopathy
CDC123 4 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic neuropathy, Diabetic retinopathy
GCKR 4 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic retinopathy, Gestational diabetes
INSR 4 / 13 Diabetes mellitus, Diabetic neuropathy, Diabetic retinopathy, Gestational diabetes
MACIR 4 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic neuropathy, Diabetic retinopathy
NRXN3 4 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic neuropathy, Diabetic retinopathy
PAX4 4 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic retinopathy, Gestational diabetes
PPARG 4 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic neuropathy, Diabetic retinopathy
TGFB1 4 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic neuropathy, Diabetic retinopathy
TRPS1 4 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic neuropathy, Diabetic retinopathy
AGBL2 3 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic retinopathy
AGMO 3 / 13 Diabetes mellitus, Diabetic neuropathy, Diabetic retinopathy
AP3S2 3 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic retinopathy
APOE 3 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic retinopathy
CCND1 3 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic retinopathy
CENPW 3 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic retinopathy
CEP68 3 / 13 Diabetes mellitus, Diabetic neuropathy, Diabetic retinopathy
EXOC6 3 / 13 Diabetic nephropathy type 2, Diabetic neuropathy, Diabetic retinopathy
FGF2 3 / 13 Diabetic neuropathy, Diabetic retinopathy, Gestational diabetes
GIPR 3 / 13 Body weight, Diabetes mellitus, Diabetic retinopathy
HHEX 3 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic neuropathy
HLA-DQB3 3 / 13 Diabetes mellitus, Diabetic eye disease, Gestational diabetes
IL6 3 / 13 Diabetes mellitus, Diabetic retinopathy, Gestational diabetes
INS 3 / 13 Diabetes mellitus, Diabetic neuropathy, Diabetic retinopathy
KLHL42 3 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic retinopathy
LEPR 3 / 13 Diabetes mellitus, Diabetic neuropathy, Gestational diabetes
MTNR1B 3 / 13 Diabetes mellitus, Diabetic neuropathy, Gestational diabetes
NKX6-3 3 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic neuropathy
PNPLA3 3 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic retinopathy
PON1 3 / 13 Diabetes mellitus, Diabetic neuropathy, Diabetic retinopathy
PROX1 3 / 13 Diabetes mellitus, Diabetic neuropathy, Diabetic retinopathy
TFAP2B 3 / 13 Body weight, Diabetes mellitus, Diabetic neuropathy
THADA 3 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic retinopathy
TLR4 3 / 13 Diabetes mellitus, Diabetic neuropathy, Diabetic retinopathy
TMEM154 3 / 13 Diabetes mellitus, Diabetic eye disease, Diabetic retinopathy
UBE3C 3 / 13 Diabetes mellitus, Diabetic neuropathy, Diabetic retinopathy
ABCB10 2 / 13 Diabetes mellitus, Diabetic retinopathy
ABO 2 / 13 Diabetes mellitus, Diabetic neuropathy
ACE 2 / 13 Diabetic neuropathy, Diabetic retinopathy
ACE2 2 / 13 Diabetic neuropathy, Diabetic retinopathy
ACP1 2 / 13 Diabetes mellitus, Diabetic retinopathy
AGT 2 / 13 Diabetic neuropathy, Diabetic retinopathy
AKR1B1 2 / 13 Diabetic neuropathy, Diabetic retinopathy
ALPK1 2 / 13 Diabetes mellitus, Diabetic neuropathy
ANKH 2 / 13 Diabetes mellitus, Diabetic neuropathy
AOC3 2 / 13 Diabetes mellitus, Diabetic neuropathy
APOB 2 / 13 Diabetes mellitus, Diabetic retinopathy
ARAP1 2 / 13 Diabetes mellitus, Gestational diabetes
ASIP 2 / 13 Diabetes mellitus, Diabetic neuropathy
AUTS2 2 / 13 Diabetes mellitus, Diabetic eye disease
BMP8A 2 / 13 Diabetes mellitus, Diabetic retinopathy
CASP3 2 / 13 Diabetic neuropathy, Diabetic retinopathy
CAT 2 / 13 Diabetes mellitus, Diabetic neuropathy
CDK12 2 / 13 Diabetes mellitus, Diabetic neuropathy
CTRB2 2 / 13 Diabetes mellitus, Diabetic neuropathy
DIS3L2 2 / 13 Diabetic neuropathy, Perlman syndrome
EIF2S3 2 / 13 Diabetes mellitus, mehmo syndrome
EPO 2 / 13 Diabetic neuropathy, Diabetic retinopathy
FN1 2 / 13 Diabetes mellitus, Diabetic neuropathy
FSTL5 2 / 13 Diabetic neuropathy, Diabetic retinopathy
GAD2 2 / 13 Diabetic retinopathy, Gestational diabetes
GCK 2 / 13 Diabetes mellitus, Gestational diabetes
GLIS3 2 / 13 Diabetes mellitus, Gestational diabetes
GPR158 2 / 13 Diabetic neuropathy, Diabetic retinopathy
GRB14 2 / 13 Diabetes mellitus, Diabetic retinopathy
GSTM1 2 / 13 Diabetes mellitus, Diabetic retinopathy
GSTT1 2 / 13 Diabetes mellitus, Diabetic retinopathy
HAPLN4 2 / 13 Diabetes mellitus, Diabetic eye disease
HBB 2 / 13 Diabetic nephropathy type 2, Diabetic neuropathy
HFE 2 / 13 Diabetes mellitus, Diabetic retinopathy
HLA-DQA1 2 / 13 Diabetes mellitus, Diabetic neuropathy
HLA-DRB1 2 / 13 Diabetic neuropathy, Diabetic retinopathy
HNF1A 2 / 13 Diabetes mellitus, Gestational diabetes
IGF2BP1 2 / 13 Diabetes mellitus, Diabetic neuropathy
ITGA2 2 / 13 Diabetes mellitus, Diabetic retinopathy
KL 2 / 13 Diabetes mellitus, Diabetic neuropathy
LINGO2 2 / 13 Diabetes mellitus, Gestational diabetes
MAU2 2 / 13 Diabetes mellitus, Diabetic retinopathy
MED30 2 / 13 Diabetes mellitus, Gestational diabetes
MMP2 2 / 13 Diabetic neuropathy, Diabetic retinopathy
What do these columns mean?
Connections in cluster
How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
Significant partners
How many of those links are statistically significant (FDR q < 0.05).
Curated genes
Distinct curated genes linked to that disease in GeDiPNet.
Member diseases (Top shared genes)
How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
Overlap genes (x / y)
x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
Cluster gene count
Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
Fold enrichment
Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
P-value / FDR q-value
Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
Shared genes (Pairs within this cluster)
Number of curated genes the two diseases in that row have in common.
Similarity score (Pairs within this cluster)
Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.

Enriched Pathways (why this cluster is grouped, biologically)

Pathway ⇵ Source ⇵ Overlap genes ⇵ Fold enrichment ⇵ P-value ⇵ FDR q-value ⇵
AGE-RAGE signaling pathway in diabetic complications KEGG 27 / 101 5.2× 8.05e-13 1.67e-10 ✓ sig.
HIF-1 signaling pathway KEGG 22 / 110 3.9× 3.81e-8 2.77e-6 ✓ sig.
PI3K-Akt signaling pathway KEGG 43 / 361 2.3× 2.74e-7 1.58e-5 ✓ sig.
Malaria KEGG 13 / 50 5.0× 1.04e-6 5.04e-5 ✓ sig.
Type I diabetes mellitus KEGG 12 / 44 5.3× 1.56e-6 7.12e-5 ✓ sig.
Interleukin-4 and Interleukin-13 signaling Reactome 19 / 108 3.4× 2.51e-6 1.08e-4 ✓ sig.
Type II diabetes mellitus KEGG 12 / 47 4.9× 3.35e-6 1.38e-4 ✓ sig.
Maturity onset diabetes of the young KEGG 9 / 26 6.7× 3.62e-6 1.48e-4 ✓ sig.
Human T-cell leukemia virus 1 infection KEGG 29 / 224 2.5× 4.85e-6 1.89e-4 ✓ sig.
Leishmaniasis KEGG 15 / 78 3.7× 9.30e-6 3.23e-4 ✓ sig.
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) Reactome 19 / 125 2.9× 2.25e-5 6.71e-4 ✓ sig.
Synthesis, secretion, and deacylation of Ghrelin Reactome 7 / 19 7.1× 2.85e-5 8.15e-4 ✓ sig.
Fluid shear stress and atherosclerosis KEGG 20 / 141 2.7× 3.86e-5 1.05e-3 ✓ sig.
Proteoglycans in cancer KEGG 25 / 204 2.4× 5.50e-5 1.40e-3 ✓ sig.
EGFR tyrosine kinase inhibitor resistance KEGG 14 / 80 3.4× 5.54e-5 1.41e-3 ✓ sig.

Enriched GO Terms (Biological Process, a second line of biological evidence)

GO term ⇵ GO ID ⇵ Overlap genes ⇵ Fold enrichment ⇵ P-value ⇵ FDR q-value ⇵
positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction GO:0051897 34 / 217 4.7× 4.99e-14 2.83e-11 ✓ sig.
response to hypoxia GO:0001666 29 / 176 4.9× 1.01e-12 4.54e-10 ✓ sig.
response to xenobiotic stimulus GO:0009410 33 / 248 4.0× 1.22e-11 4.36e-9 ✓ sig.
positive regulation of MAPK cascade GO:0043410 31 / 224 4.2× 1.86e-11 6.38e-9 ✓ sig.
regulation of blood pressure GO:0008217 19 / 83 6.9× 2.29e-11 7.64e-9 ✓ sig.
positive regulation of cell population proliferation GO:0008284 49 / 532 2.8× 1.31e-10 3.65e-8 ✓ sig.
positive regulation of gene expression GO:0010628 46 / 504 2.7× 6.65e-10 1.51e-7 ✓ sig.
regulation of insulin secretion GO:0050796 13 / 46 8.5× 2.05e-9 4.13e-7 ✓ sig.
response to glucose GO:0009749 15 / 68 6.6× 5.10e-9 9.25e-7 ✓ sig.
positive regulation of ERK1 and ERK2 cascade GO:0070374 25 / 201 3.7× 1.55e-8 2.47e-6 ✓ sig.
negative regulation of neuron apoptotic process GO:0043524 22 / 160 4.1× 1.81e-8 2.82e-6 ✓ sig.
positive regulation of endothelial cell migration GO:0010595 14 / 66 6.4× 2.83e-8 4.16e-6 ✓ sig.
negative regulation of apoptotic process GO:0043066 43 / 524 2.5× 5.56e-8 7.40e-6 ✓ sig.
positive regulation of transcription by RNA polymerase II GO:0045944 76 / 1,208 1.9× 6.17e-8 8.09e-6 ✓ sig.
positive regulation of blood vessel endothelial cell migration GO:0043536 12 / 51 7.1× 8.19e-8 1.03e-5 ✓ sig.

Pairs within this cluster, by significance

Disease A ⇵ Disease B ⇵ Similarity score ⇵ Shared genes ⇵ P-value ⇵ FDR q-value ⇵
Diabetes mellitus Diabetic eye disease 0.154 46 3.32e-78 2.58e-76 ✓ sig.
Diabetic eye disease Diabetic retinopathy 0.217 38 6.59e-68 4.62e-66 ✓ sig.
Diabetes mellitus Diabetic retinopathy 0.158 63 2.67e-66 1.84e-64 ✓ sig.
Diabetic neuropathy Diabetic retinopathy 0.157 54 2.33e-58 1.39e-56 ✓ sig.
Diabetes mellitus Diabetic neuropathy 0.135 63 4.83e-55 2.75e-53 ✓ sig.
Diabetic eye disease Diabetic neuropathy 0.110 28 3.02e-39 1.23e-37 ✓ sig.
Diabetic eye disease Diabetic nephropathy type 2 0.288 15 1.80e-36 6.91e-35 ✓ sig.
Diabetic nephropathy type 2 Diabetic retinopathy 0.096 16 1.95e-30 6.02e-29 ✓ sig.
Diabetic nephropathy type 2 Diabetic polyneuropathy 0.400 8 5.03e-24 1.17e-22 ✓ sig.
Diabetic eye disease Diabetic polyneuropathy 0.184 9 1.25e-23 2.84e-22 ✓ sig.
Diabetes mellitus Gestational diabetes 0.066 24 3.59e-21 7.24e-20 ✓ sig.
Diabetic retinopathy Gestational diabetes 0.067 16 1.42e-15 2.11e-14 ✓ sig.
Diabetic eye disease Gestational diabetes 0.086 11 2.74e-15 3.99e-14 ✓ sig.
Diabetic polyneuropathy Gestational diabetes 0.053 5 7.54e-10 6.95e-9 ✓ sig.
Body weight Diabetic polyneuropathy 0.083 2 3.63e-5 1.67e-4 ✓ sig.
Body weight Diabetic nephropathy type 2 0.061 2 1.53e-4 4.60e-4 ✓ sig.
Diabetic nephropathy type 2 lissencephaly spectrum disorder with complex brainstem malformation 0.053 1 1.17e-3 1.89e-3 ✓ sig.
Diabetic eye disease lissencephaly spectrum disorder with complex brainstem malformation 0.020 1 3.12e-3 4.10e-3 ✓ sig.
genitourinary and/or brain malformation syndrome Gestational diabetes 0.011 1 5.84e-3 7.05e-3 ✓ sig.
Gestational diabetes Intellectual developmental disorder speech peripheral neuropathy 0.011 1 1.17e-2 1.31e-2 ✓ sig.
Diabetic neuropathy Perlman syndrome 0.004 1 1.52e-2 1.68e-2 ✓ sig.
Diabetes mellitus mehmo syndrome 0.003 1 1.92e-2 2.10e-2 ✓ sig.