Gene Gene information from NCBI Gene database.
Entrez ID 1436
Gene name Colony stimulating factor 1 receptor
Gene symbol CSF1R
Synonyms (NCBI Gene)
BANDDOSC-FMSCD115CSF-1RCSFRFIM2FMSGPSCHDLSHDLS1M-CSF-R
Chromosome 5
Chromosome location 5q32
Summary The protein encoded by this gene is the receptor for colony stimulating factor 1, a cytokine which controls the production, differentiation, and function of macrophages. This receptor mediates most if not all of the biological effects of this cytokine. Li
SNPs SNP information provided by dbSNP.
61
SNP ID Visualize variation Clinical significance Consequence
rs1801271 T>A,C Likely-pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs121913390 A>G,T Likely-pathogenic Missense variant, coding sequence variant, stop gained, non coding transcript variant
rs121913392 A>C,T Likely-pathogenic Stop gained, coding sequence variant, non coding transcript variant
rs121913393 A>G Likely-pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs143025739 G>A Conflicting-interpretations-of-pathogenicity, likely-benign Non coding transcript variant, missense variant, coding sequence variant, 5 prime UTR variant
miRNA miRNA information provided by mirtarbase database.
62
miRTarBase ID miRNA Experiments Reference
MIRT006103 hsa-miR-155-5p ELISALuciferase reporter assayqRT-PCRWestern blot 21355095
MIRT006103 hsa-miR-155-5p ELISALuciferase reporter assayqRT-PCRWestern blot 21355095
MIRT006103 hsa-miR-155-5p ELISALuciferase reporter assayqRT-PCRWestern blot 21355095
MIRT006103 hsa-miR-155-5p Other 20584899
MIRT438232 hsa-miR-22-3p Luciferase reporter assayqRT-PCR 24198819
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
NR3C1 Unknown 11891846
RUNX1 Unknown 8585955;9209363
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
102
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001934 Process Positive regulation of protein phosphorylation IMP 20504948
GO:0002376 Process Immune system process IEA
GO:0002573 Process Myeloid leukocyte differentiation IEA
GO:0002931 Process Response to ischemia IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
164770 2433 ENSG00000182578
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P07333
Protein name Macrophage colony-stimulating factor 1 receptor (CSF-1 receptor) (CSF-1-R) (CSF-1R) (M-CSF-R) (EC 2.7.10.1) (Proto-oncogene c-Fms) (CD antigen CD115)
Protein function Tyrosine-protein kinase that acts as a cell-surface receptor for CSF1 and IL34 and plays an essential role in the regulation of survival, proliferation and differentiation of hematopoietic precursor cells, especially mononuclear phagocytes, such
PDB 2I0V , 2I0Y , 2I1M , 2OGV , 3BEA , 3DPK , 3KRJ , 3KRL , 3LCD , 3LCO , 4DKD , 4HW7 , 4LIQ , 4R7H , 4R7I , 4WRL , 4WRM , 6IG8 , 6N33 , 6T2W , 6WXJ , 7MFC , 8CGC , 8JOT , 8W1L
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00047 ig 207 293 Immunoglobulin domain Domain
PF13927 Ig_3 397 489 Domain
PF07714 PK_Tyr_Ser-Thr 582 910 Protein tyrosine and serine/threonine kinase Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in bone marrow and in differentiated blood mononuclear cells.
Sequence
MGPGVLLLLLVATAWHGQGIPVIEPSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTL
YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFED
QDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSAL
MGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHN
NTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFF
RVVESAY
LNLSSEQNLIQEVTVGEGLNLKVMVEAYPGLQGFNWTYLGPFSDHQPEPKLANATTKDTY
RHTFTLSLPRLKPSEAGRYSFLARNPGGWRALTFELTLRYPPEVSVIWTFINGSGTLLCA
ASGYPQPNVTWLQCSGHTDRCDEAQVLQVWDDPYPEVLSQEPFHKVTVQSLLTVETLEHN
QTYECRAHN
SVGSGSWAFIPISAGAHTHPPDEFLFTPVVVACMSIMALLLLLLLLLLYKY
KQKPKYQVRWKIIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEAT
AFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVL
VITEYCCYGDLLNFLRRKAEAMLGPSLSPGQDPEGGVDYKNIHLEKKYVRRDSGFSSQGV
DTYVEMRPVSTSSNDSFSEQDLDKEDGRPLELRDLLHFSSQVAQGMAFLASKNCIHRDVA
ARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWS
YGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHR
PTFQQICSFL
QEQAQEDRRERDYTNLPSSSRSGGSGSSSSELEEESSSEHLTCCEQGDIA
QPLLQPNNYQFC
Sequence length 972
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
25
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Alzheimer disease Likely pathogenic rs1561901881, rs1561905293 RCV000736245
RCV000736246
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Brain abnormalities, neurodegeneration, and dysosteosclerosis Pathogenic; Likely pathogenic rs1757862455, rs1758310413, rs690016564, rs2481050185, rs1757203198, rs2113778038, rs1757197459, rs281860281, rs917027829, rs1581289103, rs1561913526 RCV001331371
RCV003989027
RCV003989326
RCV003150922
RCV005412541
View all (6 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
CSF1R-related disorder Likely pathogenic; Pathogenic rs2113779576, rs690016548, rs281860274, rs1757529135 RCV003401656
RCV003398795
RCV003944835
RCV004751942
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
CSF1R-related leukoencephalopathy Likely pathogenic rs281860277 RCV005417368
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Likely benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMERS DISEASE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colon adenocarcinoma Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
5q-syndrome 5q-syndrome BEFREE 1613006, 4028159, 9403002
★☆☆☆☆
Found in Text Mining only
Acute Erythroblastic Leukemia Erythroblastic Leukemia BEFREE 9403002
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 9639416
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 17205058, 3030533, 3863666, 7885045
★☆☆☆☆
Found in Text Mining only
Acute Megakaryocytic Leukemias Megakaryocytic Leukemia BEFREE 1290964, 17360941
★☆☆☆☆
Found in Text Mining only
Acute Megakaryocytic Leukemias Megakaryocytic Leukemia LHGDN 17360941
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 14654075, 25964636
★☆☆☆☆
Found in Text Mining only
Acute Myeloid Leukemia (AML-M2) Leukemia CTD_human_DG 1390197
★☆☆☆☆
Found in Text Mining only
Acute Myeloid Leukemia, M1 Myeloid Leukemia CTD_human_DG 1390197
★☆☆☆☆
Found in Text Mining only
Acute myelomonocytic leukemia Myelomonocytic Leukemia BEFREE 9403002
★☆☆☆☆
Found in Text Mining only