Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 22
19
Diseases
487
Unique genes
0.086
Avg. similarity score
Obstructive airway disease
Most-connected disease (9 links)
Disease
Searched: susceptibility to respiratory infections associated with CD8alpha chain mutation
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susceptibility to respiratory infections associated with CD8alpha chain mutation
Obstructive airway disease
Chronic obstructive pulmonary disease
Interstitial lung disease
Lung disease
Pulmonary fibrosis
Asbestosis
Bronchopulmonary dysplasia
Cystic fibrosis
Idiopathic pulmonary fibrosis
Oral submucous fibrosis
Sepsis
Emphysema
Hepatolenticular degeneration
interstitial lung disease 2
ALG11-congenital disorder of glycosylation
Brain calcification
Genetic generalized epilepsy
lung disease, immunodeficiency, and chromosome breakage syndrome;
Member diseases (most connected first ‐ the cluster's core)
| Disease ⇵ | Connections in cluster ⇵ | Significant partners ⇵ | Curated genes ⇵ |
|---|---|---|---|
| Obstructive airway disease | 9 | 9 | 100 |
| Chronic obstructive pulmonary disease | 7 | 7 | 42 |
| Interstitial lung disease | 5 | 5 | 66 |
| Lung disease | 5 | 5 | 101 |
| Pulmonary fibrosis | 5 | 5 | 107 |
| Asbestosis | 4 | 4 | 17 |
| Bronchopulmonary dysplasia | 4 | 4 | 45 |
| Cystic fibrosis | 4 | 4 | 62 |
| Idiopathic pulmonary fibrosis | 4 | 4 | 82 |
| Oral submucous fibrosis | 4 | 4 | 20 |
| Sepsis | 3 | 3 | 34 |
| Emphysema | 2 | 2 | 36 |
| Hepatolenticular degeneration | 2 | 2 | 27 |
| interstitial lung disease 2 | 2 | 2 | 1 |
| susceptibility to respiratory infections associated with CD8alpha chain mutation | 2 | 2 | 1 |
| ALG11-congenital disorder of glycosylation | 1 | 1 | 1 |
| Brain calcification | 1 | 1 | 1 |
| Genetic generalized epilepsy | 1 | 1 | 1 |
| lung disease, immunodeficiency, and chromosome breakage syndrome; | 1 | 1 | 1 |
Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| TNF | 11 / 19 | Asbestosis, Bronchopulmonary dysplasia, Chronic obstructive pulmonary disease, Cystic fibrosis and 7 more |
| IL1B | 7 / 19 | Asbestosis, Bronchopulmonary dysplasia, Cystic fibrosis, Lung disease and 3 more |
| SERPINA1 | 7 / 19 | Asbestosis, Chronic obstructive pulmonary disease, Cystic fibrosis, Emphysema and 3 more |
| TGFB1 | 7 / 19 | Chronic obstructive pulmonary disease, Cystic fibrosis, Lung disease, Obstructive airway disease and 3 more |
| GSTM1 | 6 / 19 | Asbestosis, Bronchopulmonary dysplasia, Cystic fibrosis, Lung disease and 2 more |
| GSTT1 | 6 / 19 | Asbestosis, Bronchopulmonary dysplasia, Cystic fibrosis, Lung disease and 2 more |
| IL6 | 6 / 19 | Chronic obstructive pulmonary disease, Hepatolenticular degeneration, Obstructive airway disease, Oral submucous fibrosis and 2 more |
| MMP9 | 6 / 19 | Chronic obstructive pulmonary disease, Lung disease, Obstructive airway disease, Oral submucous fibrosis and 2 more |
| PTGS2 | 6 / 19 | Cystic fibrosis, Idiopathic pulmonary fibrosis, Lung disease, Obstructive airway disease and 2 more |
| SFTPA1 | 6 / 19 | Bronchopulmonary dysplasia, Idiopathic pulmonary fibrosis, Interstitial lung disease, Lung disease and 2 more |
| ABCA3 | 5 / 19 | Emphysema, Idiopathic pulmonary fibrosis, Interstitial lung disease, Lung disease and 1 more |
| DSP | 5 / 19 | Chronic obstructive pulmonary disease, Idiopathic pulmonary fibrosis, Interstitial lung disease, Obstructive airway disease and 1 more |
| FAM13A | 5 / 19 | Chronic obstructive pulmonary disease, Idiopathic pulmonary fibrosis, Interstitial lung disease, Obstructive airway disease and 1 more |
| MIF | 5 / 19 | Chronic obstructive pulmonary disease, Cystic fibrosis, Lung disease, Obstructive airway disease and 1 more |
| NOS2 | 5 / 19 | Asbestosis, Chronic obstructive pulmonary disease, Emphysema, Obstructive airway disease and 1 more |
| SFTPC | 5 / 19 | Idiopathic pulmonary fibrosis, Interstitial lung disease, Lung disease, Obstructive airway disease and 1 more |
| CXCL8 | 4 / 19 | Chronic obstructive pulmonary disease, Hepatolenticular degeneration, Oral submucous fibrosis, Pulmonary fibrosis |
| EPHX1 | 4 / 19 | Asbestosis, Chronic obstructive pulmonary disease, Cystic fibrosis, Obstructive airway disease |
| HIF1A | 4 / 19 | Chronic obstructive pulmonary disease, Idiopathic pulmonary fibrosis, Lung disease, Obstructive airway disease |
| HMOX1 | 4 / 19 | Chronic obstructive pulmonary disease, Cystic fibrosis, Obstructive airway disease, Pulmonary fibrosis |
| IL1RN | 4 / 19 | Bronchopulmonary dysplasia, Interstitial lung disease, Obstructive airway disease, Pulmonary fibrosis |
| MBL2 | 4 / 19 | Bronchopulmonary dysplasia, Cystic fibrosis, Obstructive airway disease, Pulmonary fibrosis |
| NOS3 | 4 / 19 | Chronic obstructive pulmonary disease, Cystic fibrosis, Obstructive airway disease, Sepsis |
| RTEL1 | 4 / 19 | Idiopathic pulmonary fibrosis, Interstitial lung disease, Obstructive airway disease, Pulmonary fibrosis |
| SFTPB | 4 / 19 | Bronchopulmonary dysplasia, Lung disease, Obstructive airway disease, Pulmonary fibrosis |
| SFTPD | 4 / 19 | Bronchopulmonary dysplasia, Chronic obstructive pulmonary disease, Lung disease, Obstructive airway disease |
| TERT | 4 / 19 | Idiopathic pulmonary fibrosis, Interstitial lung disease, Obstructive airway disease, Pulmonary fibrosis |
| ACE | 3 / 19 | Lung disease, Obstructive airway disease, Pulmonary fibrosis |
| ADRB2 | 3 / 19 | Cystic fibrosis, Lung disease, Obstructive airway disease |
| CD8A | 3 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease, susceptibility to respiratory infections associated with CD8alpha chain mutation |
| CFTR | 3 / 19 | Cystic fibrosis, Lung disease, Obstructive airway disease |
| CHRNA5 | 3 / 19 | Emphysema, Lung disease, Obstructive airway disease |
| CSF3 | 3 / 19 | Lung disease, Pulmonary fibrosis, Sepsis |
| CXCL2 | 3 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease, Pulmonary fibrosis |
| CYP1A1 | 3 / 19 | Chronic obstructive pulmonary disease, Cystic fibrosis, Obstructive airway disease |
| ELN | 3 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease, Pulmonary fibrosis |
| GSTP1 | 3 / 19 | Bronchopulmonary dysplasia, Lung disease, Obstructive airway disease |
| HDAC2 | 3 / 19 | Chronic obstructive pulmonary disease, Emphysema, Obstructive airway disease |
| HLA-DPB1 | 3 / 19 | Interstitial lung disease, Lung disease, Obstructive airway disease |
| HSPA1A | 3 / 19 | Cystic fibrosis, Obstructive airway disease, Pulmonary fibrosis |
| IL13 | 3 / 19 | Lung disease, Obstructive airway disease, Pulmonary fibrosis |
| MMP1 | 3 / 19 | Interstitial lung disease, Lung disease, Oral submucous fibrosis |
| MUC5AC | 3 / 19 | Idiopathic pulmonary fibrosis, Interstitial lung disease, Pulmonary fibrosis |
| MUC5B | 3 / 19 | Idiopathic pulmonary fibrosis, Interstitial lung disease, Pulmonary fibrosis |
| NFE2L2 | 3 / 19 | Emphysema, Lung disease, Pulmonary fibrosis |
| PLAU | 3 / 19 | Emphysema, Idiopathic pulmonary fibrosis, Pulmonary fibrosis |
| SFTPA2 | 3 / 19 | Idiopathic pulmonary fibrosis, Interstitial lung disease, interstitial lung disease 2 |
| SOD3 | 3 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease, Pulmonary fibrosis |
| SPDL1 | 3 / 19 | Idiopathic pulmonary fibrosis, Interstitial lung disease, Pulmonary fibrosis |
| TIMP1 | 3 / 19 | Hepatolenticular degeneration, Oral submucous fibrosis, Pulmonary fibrosis |
| TLR4 | 3 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease, Sepsis |
| TNFRSF8 | 3 / 19 | Chronic obstructive pulmonary disease, Emphysema, Obstructive airway disease |
| TOLLIP | 3 / 19 | Idiopathic pulmonary fibrosis, Interstitial lung disease, Obstructive airway disease |
| TP53 | 3 / 19 | Chronic obstructive pulmonary disease, Emphysema, Obstructive airway disease |
| ZKSCAN1 | 3 / 19 | Idiopathic pulmonary fibrosis, Interstitial lung disease, Pulmonary fibrosis |
| A2M | 2 / 19 | Hepatolenticular degeneration, Lung disease |
| ACTRT3 | 2 / 19 | Idiopathic pulmonary fibrosis, Pulmonary fibrosis |
| AGER | 2 / 19 | Chronic obstructive pulmonary disease, Cystic fibrosis |
| AGTR2 | 2 / 19 | Cystic fibrosis, Lung disease |
| AKAP13 | 2 / 19 | Idiopathic pulmonary fibrosis, Interstitial lung disease |
| ALG11 | 2 / 19 | ALG11-congenital disorder of glycosylation, Hepatolenticular degeneration |
| AP3B1 | 2 / 19 | Lung disease, Pulmonary fibrosis |
| APIP | 2 / 19 | Cystic fibrosis, Lung disease |
| APOE | 2 / 19 | Emphysema, Hepatolenticular degeneration |
| ARL17B | 2 / 19 | Interstitial lung disease, Pulmonary fibrosis |
| ATP11A | 2 / 19 | Idiopathic pulmonary fibrosis, Interstitial lung disease |
| CAT | 2 / 19 | Lung disease, Pulmonary fibrosis |
| CCN2 | 2 / 19 | Lung disease, Pulmonary fibrosis |
| CDKN1A | 2 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease |
| CDKN2A | 2 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease |
| CEBPA | 2 / 19 | Emphysema, Pulmonary fibrosis |
| CEBPB | 2 / 19 | Cystic fibrosis, Pulmonary fibrosis |
| CFD | 2 / 19 | Asbestosis, Pulmonary fibrosis |
| CHRM3 | 2 / 19 | Obstructive airway disease, Pulmonary fibrosis |
| CHRNA3 | 2 / 19 | Lung disease, Obstructive airway disease |
| CRP | 2 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease |
| CSMD1 | 2 / 19 | Emphysema, Interstitial lung disease |
| CTLA4 | 2 / 19 | Obstructive airway disease, Oral submucous fibrosis |
| CTNNA3 | 2 / 19 | Bronchopulmonary dysplasia, Interstitial lung disease |
| CXCL1 | 2 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease |
| CYP1A2 | 2 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease |
| DEFB1 | 2 / 19 | Lung disease, Obstructive airway disease |
| DEPTOR | 2 / 19 | Idiopathic pulmonary fibrosis, Interstitial lung disease |
| DPP9 | 2 / 19 | Idiopathic pulmonary fibrosis, Interstitial lung disease |
| EDN1 | 2 / 19 | Obstructive airway disease, Pulmonary fibrosis |
| EDNRA | 2 / 19 | Cystic fibrosis, Lung disease |
| EEFSEC | 2 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease |
| EHF | 2 / 19 | Cystic fibrosis, Lung disease |
| FARSB | 2 / 19 | Brain calcification, Interstitial lung disease |
| FGF2 | 2 / 19 | Oral submucous fibrosis, Pulmonary fibrosis |
| FOXO3 | 2 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease |
| HGF | 2 / 19 | Lung disease, Pulmonary fibrosis |
| HMGB1 | 2 / 19 | Pulmonary fibrosis, Sepsis |
| HSPA1B | 2 / 19 | Obstructive airway disease, Pulmonary fibrosis |
| HTR1A | 2 / 19 | Bronchopulmonary dysplasia, Interstitial lung disease |
| HTR2A | 2 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease |
| ICAM1 | 2 / 19 | Chronic obstructive pulmonary disease, Obstructive airway disease |
| IFNG | 2 / 19 | Oral submucous fibrosis, Sepsis |
| IL10 | 2 / 19 | Hepatolenticular degeneration, Sepsis |
| IL12B | 2 / 19 | Obstructive airway disease, Pulmonary fibrosis |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Interleukin-4 and Interleukin-13 signaling | Reactome | 38 / 108 | 8.7× | 4.75e-26 | 8.11e-23 ✓ sig. |
| Interleukin-10 signaling | Reactome | 24 / 47 | 12.6× | 1.52e-21 | 1.38e-18 ✓ sig. |
| Lipid and atherosclerosis | KEGG | 45 / 216 | 5.1× | 3.67e-20 | 2.70e-17 ✓ sig. |
| Pathways in cancer | KEGG | 72 / 533 | 3.3× | 5.16e-20 | 3.72e-17 ✓ sig. |
| Rheumatoid arthritis | KEGG | 29 / 95 | 7.5× | 3.37e-18 | 1.90e-15 ✓ sig. |
| Inflammatory bowel disease | KEGG | 24 / 66 | 9.0× | 2.87e-17 | 1.37e-14 ✓ sig. |
| IL-17 signaling pathway | KEGG | 27 / 94 | 7.1× | 2.81e-16 | 1.07e-13 ✓ sig. |
| Chagas disease | KEGG | 26 / 103 | 6.2× | 3.08e-14 | 8.00e-12 ✓ sig. |
| Amoebiasis | KEGG | 26 / 103 | 6.2× | 3.08e-14 | 8.00e-12 ✓ sig. |
| Cytokine-cytokine receptor interaction | KEGG | 43 / 298 | 3.6× | 2.83e-13 | 6.12e-11 ✓ sig. |
| PI3K-Akt signaling pathway | KEGG | 47 / 361 | 3.2× | 9.91e-13 | 1.98e-10 ✓ sig. |
| HIF-1 signaling pathway | KEGG | 25 / 110 | 5.6× | 1.27e-12 | 2.45e-10 ✓ sig. |
| Fluid shear stress and atherosclerosis | KEGG | 28 / 141 | 4.9× | 1.93e-12 | 3.66e-10 ✓ sig. |
| Tuberculosis | KEGG | 31 / 181 | 4.2× | 7.49e-12 | 1.30e-9 ✓ sig. |
| TNF signaling pathway | KEGG | 25 / 119 | 5.2× | 8.21e-12 | 1.41e-9 ✓ sig. |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| inflammatory response | GO:0006954 | 62 / 467 | 5.1× | 1.58e-26 | 6.47e-23 ✓ sig. |
| immune response | GO:0006955 | 60 / 543 | 4.2× | 1.63e-21 | 3.25e-18 ✓ sig. |
| response to hypoxia | GO:0001666 | 33 / 176 | 7.2× | 3.49e-19 | 4.86e-16 ✓ sig. |
| positive regulation of interleukin-8 production | GO:0032757 | 22 / 65 | 13.0× | 3.82e-19 | 5.28e-16 ✓ sig. |
| positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction | GO:0051897 | 36 / 217 | 6.4× | 5.54e-19 | 7.40e-16 ✓ sig. |
| positive regulation of cell migration | GO:0030335 | 41 / 292 | 5.4× | 1.02e-18 | 1.32e-15 ✓ sig. |
| lung development | GO:0030324 | 26 / 108 | 9.2× | 3.23e-18 | 3.88e-15 ✓ sig. |
| positive regulation of gene expression | GO:0010628 | 53 / 504 | 4.0× | 3.95e-18 | 4.64e-15 ✓ sig. |
| positive regulation of inflammatory response | GO:0050729 | 27 / 122 | 8.5× | 7.43e-18 | 8.42e-15 ✓ sig. |
| positive regulation of cell population proliferation | GO:0008284 | 54 / 532 | 3.9× | 9.02e-18 | 1.00e-14 ✓ sig. |
| response to lipopolysaccharide | GO:0032496 | 30 / 161 | 7.1× | 1.80e-17 | 1.91e-14 ✓ sig. |
| positive regulation of tumor necrosis factor production | GO:0032760 | 25 / 113 | 8.5× | 1.27e-16 | 1.18e-13 ✓ sig. |
| positive regulation of MAPK cascade | GO:0043410 | 33 / 224 | 5.7× | 6.49e-16 | 5.28e-13 ✓ sig. |
| positive regulation of transcription by RNA polymerase II | GO:0045944 | 82 / 1,208 | 2.6× | 8.68e-16 | 6.86e-13 ✓ sig. |
| cellular response to lipopolysaccharide | GO:0071222 | 30 / 187 | 6.2× | 1.31e-15 | 1.00e-12 ✓ sig. |