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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Ruptured aortic aneurysm Thoracoabdominal aortic aneurysm
8 genes
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SKI(1), FBN1(1), AGT(1), ELN(1), SMAD3(1), MMP9(1), EFEMP2(1), TGFBR2(1)
0.889 1.000 1.28e-29 3.84e-28 ✓ sig. Cluster 66 →
Ruptured thoracic aortic aneurysm Thoracoabdominal aortic aneurysm
8 genes
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SKI(1), FBN1(1), AGT(1), ELN(1), SMAD3(1), MMP9(1), EFEMP2(1), TGFBR2(1)
0.889 1.000 1.28e-29 3.84e-28 ✓ sig. Cluster 66 →
Jeune thoracic dystrophy Majewski syndrome
11 genes
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EVC2(1), NEK1(1), IFT80(1), DYNC2H1(1), DYNC2LI1(1), IFT172(1), TTC21B(1), WDR35(1), IFT74(1), FUZ(1), TRAF3IP1(1)
0.314 0.917 8.05e-30 2.44e-28 ✓ sig. Cluster 22 →
Arrhythmogenic right ventricular cardiomyopathy Conduction disorder of the heart
14 genes
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8 of 14 corroborated by 2+ sources
DMD(1), DSG2(6), JUP(5), PKP2(7), RBM20(1), TRPM4(1), DSP(4), MYH6(1), FLNC(1), RYR2(3), SCN5A(3), MYH7(3) +2 more
0.222 0.583 7.06e-30 2.14e-28 ✓ sig. Cluster 4 →
Cholelithiasis Liver cirrhosis
34 genes
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34 of 34 corroborated by 2+ sources
CAT(2), SERPINA1(3), AGT(2), CYP1A2(2), SERPINE1(2), MPO(2), NOS3(2), ICAM1(2), IGF1(2), NFE2L2(2), TNF(2), IL6(2) +22 more
0.092 0.245 6.62e-30 2.02e-28 ✓ sig. Cluster 226 →
Hypotrichosis Hypotrichosis simplex
10 genes
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9 of 10 corroborated by 2+ sources
LSS(6), APCDD1(6), KRT74(6), CDSN(6), CDH3(1), DSG4(6), LIPH(5), LPAR6(7), RPL21(6), SNRPE(6)
0.500 0.833 6.23e-30 1.90e-28 ✓ sig. —
Combined immunodeficiency disease Severe combined immunodeficiency
16 genes
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16 of 16 corroborated by 2+ sources
CARD11(5), LRBA(4), ZAP70(6), DOCK8(5), TFRC(3), CD70(4), FOXN1(2), STK4(5), RAG1(6), CARMIL2(3), IL2RG(2), MALT1(4) +4 more
0.200 0.364 5.94e-30 1.81e-28 ✓ sig. Cluster 10 →
Leber hereditary optic neuropathy Neuropathy, ataxia, and retinitis pigmentosa
11 genes
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7 of 11 corroborated by 2+ sources
ND1(2), ND2(2), ATP6(2), COX3(2), ATP8(1), COX1(1), ND5(2), COX2(1), ND3(1), ND4(2), ND4L(2)
0.355 0.846 5.80e-30 1.77e-28 ✓ sig. Cluster 32 →
Cutaneous squamous cell carcinoma Seborrheic keratosis
14 genes
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TP63(1), BNC2(1), OCA2(1), RALY(1), IRF4(1), KRT5(1), LPP(1), TYR(1), CASP8(1), CPVL(1), FLACC1(1), KRT6A(1) +2 more
0.250 0.452 5.21e-30 1.59e-28 ✓ sig. Cluster 29 →
Ovarian neoplasms Pancreatic neoplasms
26 genes
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4 of 26 corroborated by 2+ sources
PTEN(1), TERT(1), TP53(1), TP63(2), EGFR(1), EPCAM(1), MECOM(2), MSH2(2), SOD2(1), STAT3(1), CTNNB1(1), KRAS(1) +14 more
0.117 0.222 4.26e-30 1.31e-28 ✓ sig. Cluster 5 →
Diabetes mellitus type 1 Sarcoidosis
45 genes
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21 of 45 corroborated by 2+ sources
SH2B3(3), ACE(1), BTNL2(5), HLA-C(1), HLA-DQA1(3), HLA-DQB3(1), HLA-DRA(1), HLA-DRB1(5), HLA-DRB5(1), OR5V1(1), TNXB(1), XYLT1(2) +33 more
0.076 0.276 2.06e-30 6.32e-29 ✓ sig. Cluster 28 →
Diabetic nephropathy type 2 Diabetic retinopathy
16 genes
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2 of 16 corroborated by 2+ sources
CDKAL1(2), HMG20A(1), JAZF1(1), MACF1(1), NYAP2(1), TCF7L2(1), FTO(1), ASCL2(1), GPSM1(1), ZMIZ1(1), KCNQ1(1), SLC30A8(1) +4 more
0.096 0.889 1.95e-30 5.99e-29 ✓ sig. Cluster 73 →
Muscular dystrophy Myopathy
20 genes
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1 of 20 corroborated by 2+ sources
COL6A3(1), DAG1(1), DMD(1), PLEC(1), HMGCR(1), CRPPA(1), TRAPPC11(1), ANO5(1), SMCHD1(1), TTN(1), DYSF(1), LAMA2(1) +8 more
0.139 0.392 1.86e-30 5.72e-29 ✓ sig. Cluster 14 →
Long qt syndrome Polymorphic catecholaminergic ventricular tachycardia
14 genes
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11 of 14 corroborated by 2+ sources
PKP2(1), CALM1(6), KCNJ2(2), CACNA1C(6), TECRL(2), CALM2(6), CALM3(7), CASQ2(2), RYR2(2), SCN5A(8), TRDN(5), MYBPC3(1) +2 more
0.135 0.933 1.85e-30 5.69e-29 ✓ sig. Cluster 4 →
Congenital ichthyosiform erythroderma Congenital nonbullous ichthyosiform erythroderma
9 genes
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9 of 9 corroborated by 2+ sources
TGM1(3), SDR9C7(2), SULT2B1(2), ABCA12(3), ALOX12B(3), ALOXE3(3), PNPLA1(3), NIPAL4(3), CERS3(3)
0.692 1.000 1.64e-30 5.08e-29 ✓ sig. Cluster 233 →
Liver cirrhosis Liver disease
36 genes
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25 of 36 corroborated by 2+ sources
SERPINA1(3), APOC1(1), APOE(1), ATP7B(2), CYP1A2(2), NPC1(2), SERPINE1(2), SPP1(2), TRIB1(1), HFE(1), ALDH2(2), GSTT1(1) +24 more
0.093 0.229 1.53e-30 4.73e-29 ✓ sig. Cluster 226 →
Congenital myasthenic syndrome Postsynaptic congenital myasthenic syndrome
11 genes
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11 of 11 corroborated by 2+ sources
SCN4A(5), AGRN(5), CHRNE(5), RAPSN(5), CHRND(5), CHRNA1(5), MUSK(5), CHRNB1(6), LRP4(6), COL13A1(5), DOK7(6)
0.355 0.917 1.44e-30 4.46e-29 ✓ sig. Cluster 34 →
Congenital ichthyosis Lamellar ichthyosis
10 genes
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10 of 10 corroborated by 2+ sources
TGM1(4), SDR9C7(3), ABCA12(6), ALOX12B(4), ALOXE3(4), CYP4F22(5), PNPLA1(3), NIPAL4(4), LIPN(5), CERS3(3)
0.556 0.769 1.39e-30 4.31e-29 ✓ sig. Cluster 233 →
Idiopathic pulmonary fibrosis Interstitial lung disease
20 genes
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13 of 20 corroborated by 2+ sources
RTEL1(4), TERT(6), DEPTOR(1), MAPT(1), IVD(1), DSP(4), MUC5B(6), AKAP13(1), MUC5AC(1), SFTPC(5), SPDL1(1), STN1(4) +8 more
0.155 0.303 9.28e-31 2.88e-29 ✓ sig. —
Oropharyngeal cancer Upper aerodigestive tract neoplasm
23 genes
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HLA-DQA1(1), HLA-DRB1(1), LAMC3(1), RBFOX1(1), RERGL(1), IL1A(1), IL1B(1), CCDC192(1), HLA-DQB1(1), CTLA4(1), MUC22(1), MACO1(1) +11 more
0.116 0.383 9.24e-31 2.88e-29 ✓ sig. —
Gilbert syndrome Perinatal disease
9 genes
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9 of 9 corroborated by 2+ sources
UGT1A10(2), UGT1A8(2), UGT1A9(2), UGT1A1(5), UGT1A6(2), UGT1A3(2), UGT1A4(2), UGT1A5(2), UGT1A7(2)
0.750 0.900 7.47e-31 2.33e-29 ✓ sig. Cluster 260 →
Thyroid disease Vitiligo
21 genes
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8 of 21 corroborated by 2+ sources
SH2B3(3), FAM76B(1), HLA-DQA1(2), ICOS(1), ATXN2(1), HLA-DQB1(2), NEK6(1), CCR6(3), BACH2(3), CTLA4(2), IL2RA(1), PHTF1(1) +9 more
0.132 0.396 6.63e-31 2.07e-29 ✓ sig. Cluster 39 →
Insomnia Willis-ekbom disease
68 genes
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3 of 68 corroborated by 2+ sources
SMPD1(1), ADGRB3(1), ASB3(1), ATP2C1(1), BTBD9(3), CAMTA1(1), CNTNAP5(1), CTNNA3(1), DAB1(1), EXD3(1), GRIA1(1), GRIK3(1) +56 more
0.057 0.356 6.50e-31 2.03e-29 ✓ sig. Cluster 2 →
Graves disease Vitiligo
25 genes
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14 of 25 corroborated by 2+ sources
IFIH1(3), BTNL2(2), FAM76B(1), HLA-DQA1(2), HLA-DRB1(2), ICOS(1), RHOH(1), TNF(2), HLA-DQB1(2), VDR(1), IFNG(2), CCR6(3) +13 more
0.124 0.253 6.00e-31 1.88e-29 ✓ sig. Cluster 39 →
Hypertension Kidney disease
108 genes
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54 of 108 corroborated by 2+ sources
COL4A5(1), INS(2), APOA1(2), TERT(3), SPI1(1), COL4A4(1), ACE(2), ACTN4(2), AGT(3), ANXA1(2), BCAS3(1), CHRM3(1) +96 more
0.074 0.254 5.45e-31 1.71e-29 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.