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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hyperalgesia Trigeminal neuralgia
12 genes
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12 of 12 corroborated by 2+ sources
GFAP(2), IL1B(2), TNF(2), FOS(2), MAPK1(2), MAPK3(2), PRKCG(2), CALCA(2), GRIN1(2), AIF1(2), MAPK8(2), MAPK9(2)
0.133 1.000 6.43e-28 1.81e-26 ✓ sig. —
Movement disorder Periodic limb movement disorder
11 genes
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BTBD9(1), CNTNAP5(1), EMB(1), HCN1(1), MAP2K5(1), PTPRD(1), MYT1(1), MEIS1(1), CCDC148(1), STK33(1), LMO1(1)
0.190 1.000 6.41e-28 1.81e-26 ✓ sig. Cluster 13 →
Hereditary breast and ovarian cancer syndrome Hereditary breast cancer
11 genes
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11 of 11 corroborated by 2+ sources
CHEK2(2), NBN(2), RAD51(2), RAD50(2), ATM(2), MRE11(2), BARD1(2), PALB2(2), BRCA2(4), BRIP1(3), BRCA1(4)
0.297 0.733 6.08e-28 1.72e-26 ✓ sig. Cluster 132 →
Brain ischemia Cerebrovascular disorder
19 genes
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19 of 19 corroborated by 2+ sources
ACE(2), PLAU(2), F2(2), ICAM1(2), IL1B(2), MTHFR(2), TNF(2), IL6(2), PLAT(2), PTGS2(2), SOD1(2), ALB(2) +7 more
0.140 0.271 5.76e-28 1.63e-26 ✓ sig. —
complex neurodevelopmental disorder Developmental and epileptic encephalopathy
29 genes
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29 of 29 corroborated by 2+ sources
GABRD(2), HNRNPU(5), CHD2(5), CNTNAP2(3), GRIN2B(5), KCNQ2(7), MEF2C(2), NRXN2(2), SCN8A(7), ST3GAL3(4), GRIN2A(4), KCNB1(7) +17 more
0.094 0.246 5.07e-28 1.44e-26 ✓ sig. Cluster 6 →
Marshall syndrome Stickler syndrome
10 genes
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10 of 10 corroborated by 2+ sources
COL2A1(7), COL11A1(6), BMP4(4), LRP2(2), VCAN(2), COL11A2(2), COL9A1(8), COL9A2(7), COL9A3(8), LOXL3(3)
0.417 0.714 4.48e-28 1.27e-26 ✓ sig. Cluster 248 →
Digestive system disease Gastrointestinal disease
16 genes
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13 of 16 corroborated by 2+ sources
CHD8(2), CRTC1(1), FOXP1(1), MTHFR(2), NFE2L2(2), POMC(2), CSF3(2), KEAP1(2), CCK(2), MYLK(2), EDN1(2), ABCC2(2) +4 more
0.145 0.500 4.48e-28 1.27e-26 ✓ sig. —
Head and neck neoplasms Oropharyngeal cancer
16 genes
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LAMC3(1), RERGL(1), IL1A(1), IL1B(1), CCDC192(1), HLA-DQB1(1), CTLA4(1), MACO1(1), STK31(1), CBLB(1), ADH1C(1), NAA25(1) +4 more
0.174 0.340 4.37e-28 1.24e-26 ✓ sig. —
Cor pulmonale Heart disease
14 genes
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FGA(1), APOC1(1), PLCG2(1), SLC14A2(1), F2(1), ABO(1), SLC19A2(1), F5(1), SLC44A2(1), FGG(1), PROCR(1), F11(1) +2 more
0.095 0.933 3.73e-28 1.06e-26 ✓ sig. —
Atopic dermatitis Hypersensitivity
18 genes
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18 of 18 corroborated by 2+ sources
CCL24(2), MS4A2(2), IL10(2), IL1B(2), IL4(2), TNF(2), IL6(2), TGFB1(2), IFNG(2), CYP1A1(2), CXCR3(2), IL13(2) +6 more
0.151 0.273 3.72e-28 1.06e-26 ✓ sig. Cluster 16 →
Hepatocellular carcinoma Liver neoplasms
47 genes
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7 of 47 corroborated by 2+ sources
TERT(2), TP53(4), SCD(1), BRAF(1), CDKN2B(1), FST(1), HLA-DQA1(1), IGF2(1), MAU2(1), ESR1(2), NFE2L2(1), PPARG(1) +35 more
0.062 0.309 3.43e-28 9.80e-27 ✓ sig. —
Connective tissue disease Osteochondrodysplasias
17 genes
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7 of 17 corroborated by 2+ sources
HSPG2(2), SLC26A2(1), COL2A1(2), COL11A1(2), DYM(1), FLNB(1), TRPV4(2), FLNA(2), COL11A2(1), COMP(1), COL9A1(2), COL9A2(1) +5 more
0.127 0.515 2.95e-28 8.45e-27 ✓ sig. —
Postaxial polydactyly Rod-cone dystrophy
12 genes
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ND1(1), ND2(1), ATP6(1), COX3(1), BBIP1(1), ATP8(1), COX1(1), ND5(1), COX2(1), ND3(1), ND4(1), ND4L(1)
0.279 0.571 2.79e-28 8.00e-27 ✓ sig. Cluster 32 →
Pulmonary arterial hypertension Pulmonary hypertension
16 genes
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16 of 16 corroborated by 2+ sources
TBX4(3), BMPR1B(2), CBLN2(2), EIF2AK4(3), CAV1(7), SMAD4(2), SMAD9(8), ENG(2), KCNA5(2), BMPR2(8), GDF2(5), KCNK3(6) +4 more
0.176 0.356 2.56e-28 7.34e-27 ✓ sig. —
Cleft palate and bilateral cleft lip Rod-cone dystrophy
11 genes
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ND1(1), ND2(1), ATP6(1), COX3(1), ATP8(1), COX1(1), ND5(1), COX2(1), ND3(1), ND4(1), ND4L(1)
0.297 0.786 2.44e-28 7.00e-27 ✓ sig. Cluster 32 →
familial thoracic aortic aneurysm and aortic dissection Marfan syndrome
11 genes
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11 of 11 corroborated by 2+ sources
FBN1(7), PRKG1(2), TGFB2(3), FLNA(2), BGN(2), MYH11(3), LOX(2), MYLK(3), MFAP5(2), TGFB3(2), MAT2A(2)
0.244 0.917 2.39e-28 6.89e-27 ✓ sig. Cluster 12 →
Cleft palate and bilateral cleft lip Melas syndrome
10 genes
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5 of 10 corroborated by 2+ sources
ND1(2), ND2(1), ATP6(1), COX3(2), ATP8(1), COX1(2), ND5(2), COX2(2), ND3(1), ND4(1)
0.435 0.714 2.12e-28 6.12e-27 ✓ sig. Cluster 32 →
Peripheral neuropathy Peroneal muscle atrophy
20 genes
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2 of 20 corroborated by 2+ sources
DHTKD1(1), AARS1(1), SLC12A6(1), MME(1), DYNC1H1(1), MFN2(1), NEFL(2), COX6A1(1), DYSF(1), SH3TC2(1), PLEKHG5(1), AIFM1(1) +8 more
0.094 0.513 1.69e-28 4.87e-27 ✓ sig. —
Colorectal neoplasms Pancreatic neoplasms
32 genes
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5 of 32 corroborated by 2+ sources
DPYD(1), TP53(1), TP63(2), EGFR(1), EPCAM(1), MSH2(2), MSH6(2), PPARG(1), SOD2(1), TNF(1), EFEMP1(1), PTGS2(1) +20 more
0.085 0.274 1.62e-28 4.69e-27 ✓ sig. Cluster 5 →
Gastroesophageal reflux disease Peptic ulcer disease
32 genes
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DPYD(1), BCL3(1), BLOC1S3(1), CCKBR(1), CDH4(1), CNTNAP2(1), CR1L(1), FOXP1(1), H3C12(1), HLA-DQB3(1), HLA-DRA(1), HYAL2(1) +20 more
0.087 0.264 1.36e-28 3.94e-27 ✓ sig. —
Arrhythmogenic right ventricular cardiomyopathy Left ventricular disease
17 genes
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13 of 17 corroborated by 2+ sources
ABCC9(1), JUP(5), PKP2(8), PRKAG2(1), DSP(4), MYH6(1), LMNA(3), RYR2(3), DSC2(5), LDB3(3), MYBPC3(8), MYH7(5) +5 more
0.167 0.327 1.16e-28 3.36e-27 ✓ sig. Cluster 4 →
Accessory skin tag Benign pemphigus
8 genes
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ALDH18A1(1), ATP6V0A2(1), ELN(1), EFEMP2(1), FBLN5(1), ATP6V1A(1), ATP6V1E1(1), PYCR1(1)
0.800 1.000 1.15e-28 3.34e-27 ✓ sig. Cluster 80 →
Accessory skin tag Darier disease
8 genes
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ALDH18A1(1), ATP6V0A2(1), ELN(1), EFEMP2(1), FBLN5(1), ATP6V1A(1), ATP6V1E1(1), PYCR1(1)
0.800 1.000 1.15e-28 3.34e-27 ✓ sig. Cluster 80 →
Myasthenic syndrome Postsynaptic congenital myasthenic syndrome
11 genes
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11 of 11 corroborated by 2+ sources
SCN4A(4), AGRN(5), CHRNE(5), RAPSN(5), CHRND(5), CHRNA1(7), MUSK(5), CHRNB1(5), LRP4(5), COL13A1(5), DOK7(3)
0.262 0.917 9.62e-29 2.80e-27 ✓ sig. Cluster 34 →
Left ventricular noncompaction cardiomyopathy Wolff-parkinson-white syndrome
15 genes
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PRDM16(1), ACTN2(1), JUP(1), RBM20(1), DSP(1), MYH6(1), RYR2(1), SCN5A(1), MYBPC3(1), MYH7(1), TTN(1), ACTC1(1) +3 more
0.200 0.395 9.52e-29 2.78e-27 ✓ sig. Cluster 4 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.