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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Melanoma Neuroblastoma
37 genes
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6 of 37 corroborated by 2+ sources
TERT(5), TP53(2), ARHGAP24(1), HLA-DQA1(1), HLA-DRB1(1), SNX29(1), SPIRE2(1), TNF(1), DOCK8(2), KRT5(1), PTPN14(2), NRAS(1) +25 more
0.067 0.245 1.40e-24 3.32e-23 ✓ sig. —
Adult myoclonic epilepsy Familial adult myoclonic epilepsy
7 genes
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7 of 7 corroborated by 2+ sources
RAPGEF2(5), TNRC6A(5), ADRA2B(2), CNTN2(3), MARCHF6(5), SAMD12(5), YEATS2(4)
0.700 0.875 1.57e-24 3.73e-23 ✓ sig. Cluster 357 →
Jarcho-levin syndrome Spondylocostal dysostosis
7 genes
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7 of 7 corroborated by 2+ sources
TBX6(5), DLL3(5), HES7(6), LFNG(6), MESP2(5), RIPPLY2(7), DMRT2(2)
0.700 0.875 1.57e-24 3.73e-23 ✓ sig. —
Accessory skin tag Cutis laxa
8 genes
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8 of 8 corroborated by 2+ sources
ALDH18A1(6), ATP6V0A2(8), ELN(7), EFEMP2(7), FBLN5(6), ATP6V1A(8), ATP6V1E1(7), PYCR1(7)
0.381 1.000 1.61e-24 3.81e-23 ✓ sig. Cluster 80 →
Ureterolithiasis Urolithiasis
10 genes
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ALPL(1), BCAS3(1), PDILT(1), ABCG2(1), RGS14(1), BCAS1(1), CYP24A1(1), KLK15(1), RSPH14(1), PKN1(1)
0.143 1.000 1.65e-24 3.91e-23 ✓ sig. Cluster 178 →
Macular dystrophy Stargardt disease
12 genes
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6 of 12 corroborated by 2+ sources
ABCA4(4), CNGB3(2), BEST1(2), PRPH2(3), CRB1(1), CRX(1), PROM1(5), GPHN(1), EYS(1), CERKL(1), MFSD8(4), RDH12(1)
0.197 0.429 1.68e-24 3.98e-23 ✓ sig. Cluster 7 →
Non-small cell lung carcinoma Skin neoplasms
23 genes
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5 of 23 corroborated by 2+ sources
TERT(2), BNC2(1), FOXP1(1), HERC2(1), HLA-DQA1(1), HLA-DRB1(1), TRPS1(1), OCA2(1), RALY(1), IRF4(1), KRT5(1), BACH2(1) +11 more
0.097 0.200 1.82e-24 4.29e-23 ✓ sig. Cluster 29 →
B-cell acute lymphoblastic leukemia Biliary cholangitis
19 genes
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2 of 19 corroborated by 2+ sources
ARHGAP31(1), IKZF1(1), RIN3(1), CCR6(1), CAPSL(1), CEP43(1), GSDMB(1), NFKB1(2), ZPBP2(1), STAT4(2), IKZF3(1), TCAP(1) +7 more
0.101 0.317 1.83e-24 4.32e-23 ✓ sig. —
Behcet disease Graves disease
20 genes
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14 of 20 corroborated by 2+ sources
HLA-DRB1(2), SERPINE1(2), ICAM1(2), IL10(4), IL1B(2), IL2(1), IL4(2), TNF(1), HLA-DQB1(2), VDR(1), TGFB1(2), CTLA4(3) +8 more
0.108 0.202 1.95e-24 4.60e-23 ✓ sig. —
Majewski syndrome Short rib dysplasia-polydactyly syndrome
9 genes
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8 of 9 corroborated by 2+ sources
EVC2(1), NEK1(3), IFT80(2), DYNC2H1(4), DYNC2LI1(2), IFT172(2), TTC21B(2), WDR35(3), TRAF3IP1(2)
0.321 0.750 2.14e-24 5.04e-23 ✓ sig. Cluster 22 →
Deficiency anemia Vitamin b deficiency
9 genes
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1 of 9 corroborated by 2+ sources
FUT2(2), TCN2(1), CUBN(1), TCN1(1), CD320(1), FUT6(1), MMAA(1), MMUT(1), OOSP3(1)
0.321 0.750 2.14e-24 5.04e-23 ✓ sig. Cluster 106 →
Arrhythmogenic right ventricular dysplasia Left ventricular noncompaction cardiomyopathy
10 genes
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CTNNA3(1), DSG2(1), JUP(1), PKP2(1), DSP(1), RYR2(1), SCN5A(1), LDB3(1), MYH7(1), TMEM43(1)
0.233 0.714 2.28e-24 5.36e-23 ✓ sig. Cluster 4 →
Cholelithiasis Progressive intrahepatic cholestasis
12 genes
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12 of 12 corroborated by 2+ sources
MYO5B(5), VPS33B(3), NR1H4(5), ATP8B1(6), TJP2(6), ABCB11(5), ABCB4(6), SLC51A(4), KIF12(4), USP53(5), SEMA7A(4), ZFYVE19(3)
0.085 0.923 2.33e-24 5.46e-23 ✓ sig. —
Multiple myeloma Non-hodgkins lymphoma
24 genes
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4 of 24 corroborated by 2+ sources
ANKRD11(1), GRAMD1B(1), HLA-DQA1(1), HLA-DRB1(1), MECOM(1), BCL2(2), CCHCR1(1), HLA-DQB1(1), EXOC2(1), IRF4(2), EOMES(1), SP140(1) +12 more
0.094 0.178 2.39e-24 5.60e-23 ✓ sig. —
Congenital contractural arachnodactyly Ehlers-danlos syndrome
12 genes
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12 of 12 corroborated by 2+ sources
FBN1(2), FBN2(7), PLOD1(5), SLC2A10(2), TGFB2(2), SMAD3(2), COL3A1(7), TGFBR1(2), TGFBR2(2), LOX(2), AEBP1(6), FKBP14(5)
0.194 0.414 2.87e-24 6.71e-23 ✓ sig. Cluster 12 →
Lung neoplasms Non-small-cell lung carcinoma
29 genes
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TP53(1), CDH13(1), ERCC1(1), GSTP1(1), IL10(1), NFE2L2(1), STAT3(1), GCLC(1), XPC(1), FHIT(1), KRAS(1), APC(1) +17 more
0.080 0.212 3.59e-24 8.38e-23 ✓ sig. Cluster 5 →
Charcot-marie-tooth disease Spinal muscular atrophy
16 genes
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15 of 16 corroborated by 2+ sources
KIF1B(6), TRPV4(5), SIGMAR1(3), BICD2(4), DYNC1H1(5), ATP7A(3), HSPB1(6), REEP1(3), PLEKHG5(5), GARS1(7), HSPB8(5), IGHMBP2(6) +4 more
0.104 0.432 3.69e-24 8.60e-23 ✓ sig. Cluster 15 →
Congenital heart defects Craniofacial abnormalities
20 genes
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20 of 20 corroborated by 2+ sources
GP1BB(2), TBX1(2), UFD1(2), COL2A1(2), TGFB2(2), ECE1(2), RCAN1(2), GNAQ(2), IRX5(2), EYA1(2), PITX2(2), AHR(2) +8 more
0.097 0.286 3.90e-24 9.10e-23 ✓ sig. Cluster 111 →
Congenital cataract Posterior subcapsular cataract
10 genes
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8 of 10 corroborated by 2+ sources
CRYBB2(3), PITX3(2), EPHA2(3), CHMP4B(4), CRYAB(1), UNC45B(2), MIP(1), CRYBA1(2), GJA3(2), LEMD2(3)
0.161 0.909 4.02e-24 9.35e-23 ✓ sig. Cluster 43 →
Aplasia of the vermis Congenital brain malformation
11 genes
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ARL3(1), TMEM216(1), TMEM237(1), KIAA0586(1), KIAA0753(1), IFT74(1), INPP5E(1), TOGARAM1(1), B9D2(1), TMEM218(1), FAM149B1(1)
0.180 0.647 4.05e-24 9.41e-23 ✓ sig. —
Aplasia of the vermis Congenital hypoplasia of part of brain
11 genes
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ARL3(1), TMEM216(1), TMEM237(1), KIAA0586(1), KIAA0753(1), IFT74(1), INPP5E(1), TOGARAM1(1), B9D2(1), TMEM218(1), FAM149B1(1)
0.180 0.647 4.05e-24 9.41e-23 ✓ sig. —
Congenital myasthenic syndrome Presynaptic congenital myasthenic syndrome
9 genes
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9 of 9 corroborated by 2+ sources
AGRN(5), CHAT(6), MYO9A(4), SNAP25(4), SYT2(6), SLC5A7(5), COL13A1(5), SLC25A1(4), SLC18A3(4)
0.281 0.818 4.11e-24 9.53e-23 ✓ sig. Cluster 34 →
Color vision deficiency Obesity
167 genes
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24 of 167 corroborated by 2+ sources
SOX5(1), PRDM16(1), CUL9(1), DMRT1(1), WWOX(1), ACAN(1), GNAT2(3), KIF7(1), PDE4D(1), RBPJ(1), CDH2(1), ADGRL2(1) +155 more
0.084 0.173 4.28e-24 9.92e-23 ✓ sig. Cluster 2 →
Diabetic nephropathy type 2 Diabetic polyneuropathy
8 genes
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CDKAL1(1), JAZF1(1), NYAP2(1), TCF7L2(1), FTO(1), KCNQ1(1), IGF2BP2(1), WFS1(1)
0.400 0.889 5.03e-24 1.16e-22 ✓ sig. Cluster 73 →
Fetal akinesia deformation sequence Pena-shokeir syndrome
10 genes
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10 of 10 corroborated by 2+ sources
RAPSN(5), MAGEL2(2), GLDN(2), KIF21A(2), MYOD1(3), MUSK(6), TUBA1A(2), SLC18A3(3), DOK7(5), NUP88(5)
0.182 0.833 5.05e-24 1.17e-22 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.