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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Vitamin b deficiency Vitamin b12 deficiency
9 genes
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1 of 9 corroborated by 2+ sources
FUT2(2), TCN2(1), CUBN(1), TCN1(1), CD320(1), FUT6(1), MMAA(1), MMUT(1), OOSP3(1)
0.600 0.818 9.04e-29 2.64e-27 ✓ sig. Cluster 106 →
Ear, patella, short stature syndrome Meier-gorlin syndrome
9 genes
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8 of 9 corroborated by 2+ sources
CDC45(7), CDC6(7), CDT1(7), GMNN(7), ORC1(6), DONSON(1), GINS3(2), ORC4(7), ORC6(7)
0.600 0.818 9.04e-29 2.64e-27 ✓ sig. Cluster 171 →
Celiac disease Polyarticular juvenile idiopathic arthritis
19 genes
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8 of 19 corroborated by 2+ sources
RUNX1(1), ANKRD55(2), UBE2L3(1), IL2(1), RUNX3(3), ATXN2(1), HLA-DQB1(4), IRF1(1), IL21(3), IL2RA(3), LTBR(1), PHTF1(1) +7 more
0.092 0.594 8.93e-29 2.61e-27 ✓ sig. —
Atopic dermatitis Rhinitis
18 genes
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9 of 18 corroborated by 2+ sources
CCL24(2), EMSY(3), MS4A2(1), BDNF(1), IL10(2), IL1B(2), IL2(1), IL4(2), MBL2(1), TLR4(1), TNF(1), IFNG(2) +6 more
0.158 0.277 8.10e-29 2.38e-27 ✓ sig. Cluster 16 →
Ehlers-danlos syndrome Marfan syndrome
15 genes
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15 of 15 corroborated by 2+ sources
FBN1(7), NOTCH1(2), COL5A1(8), FBN2(2), SLC2A10(2), TGFB2(2), FLNA(2), SMAD3(2), COL1A1(7), COL3A1(7), MYH11(2), TGFBR1(3) +3 more
0.205 0.349 6.73e-29 1.98e-27 ✓ sig. Cluster 12 →
Melas syndrome Neuropathy, ataxia, and retinitis pigmentosa
10 genes
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6 of 10 corroborated by 2+ sources
ND1(2), ND2(1), ATP6(2), COX3(2), ATP8(1), COX1(2), ND5(2), COX2(2), ND3(1), ND4(1)
0.455 0.769 6.07e-29 1.78e-27 ✓ sig. Cluster 32 →
Cardiac arrest Ventricular fibrillation
13 genes
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4 of 13 corroborated by 2+ sources
INS(2), CACNB2(1), DSG2(1), TRPM4(1), DSP(1), DPP6(3), MYH6(1), RYR2(1), SCN5A(3), CACNA2D1(1), PDZRN4(1), AKAP9(1) +1 more
0.260 0.500 5.40e-29 1.59e-27 ✓ sig. Cluster 4 →
Neuropathy, ataxia, and retinitis pigmentosa Rod-cone dystrophy
11 genes
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1 of 11 corroborated by 2+ sources
ND1(1), ND2(1), ATP6(2), COX3(1), ATP8(1), COX1(1), ND5(1), COX2(1), ND3(1), ND4(1), ND4L(1)
0.306 0.846 5.23e-29 1.54e-27 ✓ sig. Cluster 32 →
Arrhythmogenic right ventricular cardiomyopathy Arrhythmogenic right ventricular dysplasia
12 genes
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12 of 12 corroborated by 2+ sources
CTNNA3(7), DSG2(6), JUP(5), PKP2(7), DSP(4), RYR2(3), SCN5A(3), DSC2(6), LDB3(2), MYH7(3), TGFB3(7), TMEM43(6)
0.218 0.857 5.06e-29 1.49e-27 ✓ sig. Cluster 4 →
Leber hereditary optic neuropathy Rod-cone dystrophy
13 genes
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9 of 13 corroborated by 2+ sources
LRAT(2), ND1(2), ND2(2), RPE65(2), ATP6(2), COX3(2), ATP8(1), COX1(1), ND5(2), COX2(1), ND3(1), ND4(2) +1 more
0.265 0.464 4.82e-29 1.43e-27 ✓ sig. Cluster 32 →
complex neurodevelopmental disorder Nonsyndromic intellectual disability
26 genes
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26 of 26 corroborated by 2+ sources
EPB41L1(3), GRIA1(3), GRIK2(4), GRIN2B(3), KCNQ2(3), NBEA(3), PRICKLE2(3), SCN8A(3), ST3GAL3(3), ZNF292(2), CIC(3), RSRC1(4) +14 more
0.111 0.220 4.25e-29 1.26e-27 ✓ sig. Cluster 6 →
Coloboma Congenital ocular coloboma
11 genes
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9 of 11 corroborated by 2+ sources
ACTB(2), ELP4(1), PAX6(4), RAX(2), ALDH7A1(2), LAMB1(2), MYH10(2), ACTG1(2), FZD5(1), SALL2(2), SLBP(2)
0.355 0.733 3.65e-29 1.08e-27 ✓ sig. Cluster 272 →
Coronary artery disease Gout
156 genes
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24 of 156 corroborated by 2+ sources
SKI(1), JMJD1C(1), COL4A4(1), ABCA1(2), ADGRL2(1), ADH5(1), ALDH1A2(1), ANKRD55(1), APH1B(2), APOC1(1), BAZ1B(1), BCAS3(1) +144 more
0.086 0.190 3.23e-29 9.59e-28 ✓ sig. —
Cleft palate and bilateral cleft lip Leber hereditary optic neuropathy
11 genes
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7 of 11 corroborated by 2+ sources
ND1(2), ND2(2), ATP6(2), COX3(2), ATP8(1), COX1(1), ND5(2), COX2(1), ND3(1), ND4(2), ND4L(2)
0.344 0.786 2.71e-29 8.05e-28 ✓ sig. Cluster 32 →
Colonic neoplasms Colorectal neoplasms
40 genes
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3 of 40 corroborated by 2+ sources
DPYD(1), TP53(1), EGFR(1), IGF2(1), RHPN2(2), SRC(1), TCF7L2(1), TET2(2), BAX(1), BCL2(1), MTHFR(1), PPARG(1) +28 more
0.088 0.197 2.07e-29 6.15e-28 ✓ sig. Cluster 5 →
Leber congenital amaurosis Macular dystrophy
17 genes
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6 of 17 corroborated by 2+ sources
ABCA4(1), CNGB3(1), PRPH2(3), PDE6B(1), TTC8(1), USH2A(1), CRB1(6), CRX(6), GUCY2D(6), PROM1(3), OTX2(1), GPHN(1) +5 more
0.170 0.386 1.98e-29 5.91e-28 ✓ sig. Cluster 7 →
Gout Hypertension
157 genes
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38 of 157 corroborated by 2+ sources
INS(3), SRD5A2(1), ATP2A2(2), PIK3R1(1), CHEK2(1), SPI1(1), CDH2(1), ALG9(1), COL4A4(2), ALDH1A2(1), APOC1(1), AUTS2(1) +145 more
0.087 0.192 1.80e-29 5.38e-28 ✓ sig. —
Bilirubin metabolism disease Gilbert syndrome
9 genes
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9 of 9 corroborated by 2+ sources
UGT1A10(2), UGT1A8(2), UGT1A9(2), UGT1A6(2), SLCO1B1(2), UGT1A3(2), UGT1A4(2), UGT1A5(2), UGT1A7(2)
0.643 0.900 1.64e-29 4.92e-28 ✓ sig. Cluster 260 →
Alzheimer disease Metabolic syndrome
335 genes
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38 of 335 corroborated by 2+ sources
ANKRD11(1), HSPG2(1), RERE(1), JMJD1C(1), RREB1(1), INS(2), GATA4(2), ZFPM2(1), APOA1(2), PDE4D(1), ADK(1), ABCA1(2) +323 more
0.105 0.257 1.53e-29 4.59e-28 ✓ sig. Cluster 2 →
Congenital ichthyosiform erythroderma Lamellar ichthyosis
9 genes
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9 of 9 corroborated by 2+ sources
TGM1(2), SDR9C7(3), SULT2B1(3), ABCA12(3), ALOX12B(3), ALOXE3(3), PNPLA1(2), NIPAL4(2), CERS3(2)
0.600 1.000 1.50e-29 4.49e-28 ✓ sig. Cluster 233 →
Conduction disorder of the heart Ventricular fibrillation
13 genes
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1 of 13 corroborated by 2+ sources
DSG2(1), JUP(1), PKP2(1), RBM20(1), TRPM4(1), DSP(1), CACNA1C(1), MYH6(1), KCNH2(1), RYR2(1), SCN5A(3), TTN(1) +1 more
0.271 0.542 1.30e-29 3.90e-28 ✓ sig. Cluster 4 →
Ruptured abdominal aortic aneurysm Ruptured aortic aneurysm
8 genes
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SKI(1), FBN1(1), AGT(1), ELN(1), SMAD3(1), MMP9(1), EFEMP2(1), TGFBR2(1)
0.889 1.000 1.28e-29 3.84e-28 ✓ sig. Cluster 66 →
Ruptured abdominal aortic aneurysm Ruptured thoracic aortic aneurysm
8 genes
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SKI(1), FBN1(1), AGT(1), ELN(1), SMAD3(1), MMP9(1), EFEMP2(1), TGFBR2(1)
0.889 1.000 1.28e-29 3.84e-28 ✓ sig. Cluster 66 →
Ruptured abdominal aortic aneurysm Thoracoabdominal aortic aneurysm
8 genes
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SKI(1), FBN1(1), AGT(1), ELN(1), SMAD3(1), MMP9(1), EFEMP2(1), TGFBR2(1)
0.889 1.000 1.28e-29 3.84e-28 ✓ sig. Cluster 66 →
Ruptured aortic aneurysm Ruptured thoracic aortic aneurysm
8 genes
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SKI(1), FBN1(1), AGT(1), ELN(1), SMAD3(1), MMP9(1), EFEMP2(1), TGFBR2(1)
0.889 1.000 1.28e-29 3.84e-28 ✓ sig. Cluster 66 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.