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Gene Gene information from NCBI Gene database.
Entrez ID 6121
Gene name Retinoid isomerohydrolase RPE65
Gene symbol RPE65
Synonyms (NCBI Gene)
BCO3LCA2RP20mRPE65p63rd12sRPE65
Chromosome 1
Chromosome location 1p31.3
Summary The protein encoded by this gene is a component of the vitamin A visual cycle of the retina which supplies the 11-cis retinal chromophore of the photoreceptors opsin visual pigments. It is a member of the carotenoid cleavage oxygenase superfamily. All mem
SNPs SNP information provided by dbSNP.
52 Show/Hide all (52)
SNP ID Visualize variation Clinical significance Consequence
rs61751276 C>T Pathogenic-likely-pathogenic, pathogenic, likely-pathogenic Intron variant
rs61751279 T>A Not-provided, pathogenic Splice acceptor variant, intron variant
rs61751281 C>T Pathogenic Missense variant, coding sequence variant, intron variant
rs61751282 C>T Not-provided, likely-pathogenic Missense variant, coding sequence variant, intron variant
rs61752871 G>A Pathogenic 5 prime UTR variant, coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
15 Show/Hide all (15)
miRTarBase ID miRNA Experiments Reference
MIRT018146 hsa-miR-335-5p Microarray 18185580
MIRT028349 hsa-miR-32-5p Sequencing 20371350
MIRT1315590 hsa-miR-3140-3p CLIP-seq
MIRT1315591 hsa-miR-3658 CLIP-seq
MIRT1315592 hsa-miR-935 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
43 Show/Hide all (43)
GO ID Ontology Definition Evidence Reference
GO:0001523 Process Retinoid metabolic process IDA 25112876
GO:0001523 Process Retinoid metabolic process TAS
GO:0001786 Function Phosphatidylserine binding ISS
GO:0001895 Process Retina homeostasis IMP 15557452
GO:0003407 Process Neural retina development IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
180069 10294 ENSG00000116745
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q16518
Protein name Retinoid isomerohydrolase (EC 3.1.1.64) (All-trans-retinyl-palmitate hydrolase) (Lutein isomerase) (Meso-zeaxanthin isomerase) (EC 5.3.3.22) (Retinal pigment epithelium-specific 65 kDa protein) (Retinol isomerase)
Protein function Critical isomerohydrolase in the retinoid cycle involved in regeneration of 11-cis-retinal, the chromophore of rod and cone opsins. Catalyzes the cleavage and isomerization of all-trans-retinyl fatty acid esters to 11-cis-retinol which is furthe
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03055 RPE65 15 → 532 Retinal pigment epithelial membrane protein Family
Tissue specificity TISSUE SPECIFICITY: Retina (at protein level). Retinal pigment epithelium specific. {ECO:0000269|PubMed:17848510, ECO:0000269|PubMed:21493626}.
Sequence
Sequence length 533
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
KEGG Pathway Reactome Pathway
Retinol metabolism The canonical retinoid cycle in rods (twilight vision)
Metabolic pathways  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
41
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Show/Hide Causal Diseases (23)
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormal electroretinogram Pathogenic rs1057518922 RCV000415360
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Abnormality of the eye Likely pathogenic; Pathogenic rs1375943362, rs61752871 RCV001814345
RCV001813981
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Abnormality of vision Pathogenic rs1057518922 RCV000415360
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autism Pathogenic rs1571164333 RCV001003571
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal recessive retinitis pigmentosa Pathogenic; Likely pathogenic rs61751282, rs61752884, rs786205444, rs61752871, rs1645879569, rs1645826941, rs1645898413, rs767478543 RCV001257816
RCV001257821
RCV001257817
RCV001257818
RCV001257822
View all (3 more)
★★★★★
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Show/Hide Unknown Diseases (18)
Phenotype Name Clinical Significance Source Reference Evidence Score
AMAUROSIS CONGENITA OF LEBER, TYPE 2 — CTD, Disgenet
CTD, Disgenet
—
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISTIC DISORDER — Disgenet —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BLINDNESS — CTD 16150724, 16226919
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BLINDNESS AND LOW VISION — Disgenet —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONE-ROD DYSTROPHIES — Disgenet —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Show/Hide Text Mining Associations (310)
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
ACTH Deficiency, Isolated ACTH Deficiency CLINVAR_DG 30576320
★★★★★
★☆☆☆☆
Found in Text Mining only
Actinic keratosis Actinic keratosis BEFREE 16181461
★★★★★
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 24481878
★★★★★
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 11727253, 14562279, 14612504, 15551738, 16575619, 16884378, 20332665, 22935826, 24166777, 24194854, 25189640, 25982011, 27889037, 28394798, 28417484
View all (5 more)
★★★★★
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of large intestine Colorectal Cancer BEFREE 11727253
★★★★★
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 25189640, 26603857
★★★★★
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of prostate Prostate adenocarcinoma BEFREE 29894516
★★★★★
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Clear Cell Adenocarcinoma BEFREE 16445626
★★★★★
★☆☆☆☆
Found in Text Mining only
Adenoid Cystic Carcinoma Adenocarcinoma BEFREE 31653135
★★★★★
★☆☆☆☆
Found in Text Mining only
Adenoma of large intestine Colorectal adenoma BEFREE 16575619
★★★★★
★☆☆☆☆
Found in Text Mining only