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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Mobius syndrome Warburg micro syndrome
4 genes
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4 of 4 corroborated by 2+ sources
RAB18(6), RAB3GAP1(5), RAB3GAP2(5), TBC1D20(5)
0.250 1.000 5.83e-13 7.18e-12 ✓ sig. Cluster 48 →
Anorexia nervosa Irritable bowel syndrome
19 genes
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RERE(1), ABT1(1), DCC(1), ERBB4(1), MPHOSPH9(1), NALF1(1), PTPRF(1), SORCS3(1), TCF4(1), CRB1(1), RBMS1(1), FAF1(1) +7 more
0.052 0.142 5.75e-13 7.10e-12 ✓ sig. —
Brain ischemia Glomerulonephritis
11 genes
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11 of 11 corroborated by 2+ sources
F2(2), IL1B(2), MTHFR(2), TNF(2), IL6(2), ALB(2), CCL2(2), IL1RN(2), IL18(2), CCL3(2), CCL4(2)
0.070 0.157 5.52e-13 6.81e-12 ✓ sig. —
Dental caries Squamous cell carcinoma
42 genes
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6 of 42 corroborated by 2+ sources
RTEL1(1), ABT1(1), EPHX2(1), GLIS3(1), GRIN2B(1), H4C8(1), HLA-DQA1(1), HLA-DRB5(1), MOG(1), MTMR3(1), PBX3(1), RARB(2) +30 more
0.043 0.182 5.45e-13 6.73e-12 ✓ sig. Cluster 20 →
Colitis Sepsis
7 genes
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7 of 7 corroborated by 2+ sources
IL10(2), IL1B(2), TNF(2), IL6(2), IFNG(2), NOS2(2), MIF(2)
0.115 0.212 5.43e-13 6.71e-12 ✓ sig. Cluster 114 →
Mitochondrial myopathy Progressive external ophthalmoplegia
5 genes
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5 of 5 corroborated by 2+ sources
RRM2B(4), IL1A(2), IL1B(2), SLC25A4(3), TK2(3)
0.208 0.385 5.34e-13 6.60e-12 ✓ sig. Cluster 32 →
Congenital neurologic anomalies Hereditary spastic paraplegia
13 genes
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2 of 13 corroborated by 2+ sources
ABCD1(1), RNASEH2B(2), ALDH18A1(1), AP4M1(1), AP4B1(1), AP4E1(1), POLG(1), CYP2U1(2), AMPD2(1), ATL1(1), GJC2(1), ERLIN2(1) +1 more
0.064 0.129 5.29e-13 6.55e-12 ✓ sig. —
Cryptophthalmos syndrome Cyclocephaly
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.364 0.571 5.23e-13 6.47e-12 ✓ sig. Cluster 48 →
Uveomeningoencephalitic syndrome Vogt-koyanagi-harada disease
4 genes
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4 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(3), FAS(2), PTPN22(2)
0.364 0.571 5.23e-13 6.47e-12 ✓ sig. Cluster 1 →
Follicular thyroid cancer Nonmedullary thyroid cancer
4 genes
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4 of 4 corroborated by 2+ sources
NRAS(3), HRAS(3), SRGAP1(2), MINPP1(2)
0.364 0.571 5.23e-13 6.47e-12 ✓ sig. Cluster 18 →
Polymorphic catecholaminergic ventricular tachycardia Ventricular fibrillation
6 genes
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2 of 6 corroborated by 2+ sources
PKP2(1), KCNJ2(1), CACNA1C(1), RYR2(2), SCN5A(3), TTN(1)
0.130 0.400 5.19e-13 6.44e-12 ✓ sig. Cluster 4 →
Cleft lip and palate Complete unilateral cleft lip
6 genes
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TP63(1), IRF6(1), BMP4(1), MSX1(1), CDH1(1), NECTIN1(1)
0.130 0.400 5.19e-13 6.44e-12 ✓ sig. Cluster 63 →
Myasthenia gravis Thyroid disease
8 genes
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3 of 8 corroborated by 2+ sources
FAM76B(1), HLA-DQA1(2), ATXN2(1), HLA-DQB1(2), CEP43(1), CTLA4(1), PTPN22(2), RNF39(1)
0.095 0.211 5.12e-13 6.36e-12 ✓ sig. —
Bile duct disorder Cholelithiasis
6 genes
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MAML3(1), PRKAG2(1), ADCY9(1), GREP1(1), NPM2(1), PKMYT1(1)
0.043 1.000 4.86e-13 6.03e-12 ✓ sig. —
familial thoracic aortic aneurysm and aortic dissection Loeys-dietz syndrome
5 genes
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5 of 5 corroborated by 2+ sources
FBN1(2), TGFB2(7), MYH11(2), MYLK(2), TGFB3(6)
0.208 0.417 4.78e-13 5.94e-12 ✓ sig. Cluster 12 →
Cardiac arrest Catecholaminergic polymorphic ventricular tachycardia
6 genes
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2 of 6 corroborated by 2+ sources
DSG2(1), TRPM4(1), DSP(1), RYR2(7), SCN5A(1), ANK2(3)
0.146 0.300 4.75e-13 5.91e-12 ✓ sig. Cluster 4 →
Psoriasis vulgaris Seborrheic dermatitis
8 genes
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IRF1(1), IL23R(1), IL2RA(1), TYK2(1), ZMIZ1(1), POLI(1), CARD14(1), FAM8A1(1)
0.095 0.216 4.75e-13 5.91e-12 ✓ sig. Cluster 162 →
Brain ischemia Thyroid neoplasms
9 genes
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9 of 9 corroborated by 2+ sources
TP53(2), IL1B(2), TNF(2), IL6(2), MAPK1(2), PTGS2(2), HIF1A(2), CCL2(2), CXCL10(2)
0.083 0.196 4.69e-13 5.84e-12 ✓ sig. —
Ischemic stroke Venous thrombosis
7 genes
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7 of 7 corroborated by 2+ sources
PLAU(2), F2(2), MTHFR(2), PLAT(2), F5(2), PROC(2), F7(2)
0.104 0.318 4.68e-13 5.83e-12 ✓ sig. Cluster 55 →
Brain ischemia Dermatologic disorder
10 genes
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9 of 10 corroborated by 2+ sources
HSPA1B(1), IL1A(2), IL1B(2), MTHFR(2), SOD2(2), TNF(2), IL6(2), PTGS2(2), IL1RN(2), CCL4(2)
0.078 0.147 4.56e-13 5.69e-12 ✓ sig. —
Nervous system disease Status epilepticus
10 genes
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10 of 10 corroborated by 2+ sources
SCN8A(2), BDNF(2), CASP3(2), NOS1(2), TNF(2), NGF(2), FOS(2), PTGS2(2), ABCB1(2), ABCC2(2)
0.078 0.147 4.56e-13 5.69e-12 ✓ sig. —
Cavernous malformations of cns Cerebral cavernous malformation
4 genes
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4 of 4 corroborated by 2+ sources
KRIT1(6), PDCD10(7), PIK3CA(4), CCM2(7)
0.364 0.667 4.48e-13 5.60e-12 ✓ sig. Cluster 308 →
Apert syndrome Goldenhar syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.333 0.800 4.48e-13 5.60e-12 ✓ sig. Cluster 48 →
Digenic hemochromatosis Hemochromatosis
4 genes
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4 of 4 corroborated by 2+ sources
TFR2(7), HFE(7), HAMP(7), HJV(7)
0.267 1.000 4.28e-13 5.34e-12 ✓ sig. Cluster 135 →
Congenital hypothyroidism Congenital hypothyroidism due to absence of thyroid gland
4 genes
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3 of 4 corroborated by 2+ sources
TSHR(3), NKX2-5(2), PAX8(2), SLC26A4(1)
0.267 1.000 4.28e-13 5.34e-12 ✓ sig. Cluster 88 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.