Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 291
6
Diseases
1,603
Unique genes
0.121
Avg. similarity score
Diabetes mellitus type 1
Most-connected disease (4 links)
Disease
Searched: Systemic lupus erythematosus
Pinned (dragged)
Node size = connections within this cluster · edge thickness = similarity strength · hover an edge for its details ·
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Systemic lupus erythematosus
Diabetes mellitus type 1
Hypothyroidism
Rheumatoid arthritis
Sarcoidosis
Autoinflammatory-pancytopenia syndrome
Member diseases (most connected first ‐ the cluster's core)
| Disease ⇵ | Connections in cluster ⇵ | Significant partners ⇵ | Curated genes ⇵ |
|---|---|---|---|
| Diabetes mellitus type 1 | 4 | 4 | 477 |
| Hypothyroidism | 4 | 4 | 374 |
| Rheumatoid arthritis | 4 | 4 | 662 |
| Systemic lupus erythematosus | 4 | 4 | 654 |
| Sarcoidosis | 3 | 3 | 163 |
| Autoinflammatory-pancytopenia syndrome | 1 | 1 | 1 |
Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| ATXN2 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| BTNL2 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| C2 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| CTLA4 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| HLA-DMB | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| HLA-DOB | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| HLA-DPB1 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| HLA-DQA1 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| HLA-DQB1 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| HLA-DQB3 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| HLA-DRA | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| HLA-DRB1 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| HLA-DRB5 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| NOTCH4 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| SH2B3 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| TAP2 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| TNF | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| TNXB | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| TSBP1 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| TYK2 | 5 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more |
| AGER | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| BACH2 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| BCL2L15 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| C1ORF141 | 4 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis, Systemic lupus erythematosus |
| CCDC88B | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis |
| CD226 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| ETS1 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| HLA-A | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| HLA-B | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis |
| HLA-C | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis |
| HLA-DOA | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| HLA-DPA1 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| ICOS | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| IKZF3 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| IL21 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| IL23R | 4 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis, Systemic lupus erythematosus |
| IL2RA | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| INPP5B | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| LRIG2 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| LTA | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis |
| MAGI3 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| MSH5 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| NCR3 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis |
| NKX2-3 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| PHTF1 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| PPARG | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Sarcoidosis, Systemic lupus erythematosus |
| PSMB8 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| PSMB9 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| PSORS1C1 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| PTPN11 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| PTPN2 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| PTPN22 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| RAD51B | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| RASGRP1 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| RBM17 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| RSBN1 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| SFTA2 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| SLC11A1 | 4 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis, Systemic lupus erythematosus |
| SLC25A28 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| SOD2 | 4 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis, Systemic lupus erythematosus |
| STAT4 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| TAGAP | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| TAP1 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| UBASH3A | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis |
| WHR1 | 4 / 6 | Hypothyroidism, Rheumatoid arthritis, Sarcoidosis, Systemic lupus erythematosus |
| ZFP57 | 4 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| ACAP1 | 3 / 6 | Diabetes mellitus type 1, Hypothyroidism, Systemic lupus erythematosus |
| ACOXL | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis |
| ADCY7 | 3 / 6 | Diabetes mellitus type 1, Hypothyroidism, Systemic lupus erythematosus |
| AFF3 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| AIF1 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| ANKRD55 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| APOM | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis |
| ARID5B | 3 / 6 | Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| ATG16L1 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| ATG5 | 3 / 6 | Rheumatoid arthritis, Sarcoidosis, Systemic lupus erythematosus |
| ATP6V1G3 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| BLTP1 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| BRD2 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis |
| BTN3A1 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| C1QTNF6 | 3 / 6 | Diabetes mellitus type 1, Hypothyroidism, Systemic lupus erythematosus |
| C6ORF15 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis |
| CARD9 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| CARMIL1 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| CAT | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| CBLB | 3 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis |
| CCHCR1 | 3 / 6 | Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| CCR2 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis |
| CCR5 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis |
| CD28 | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| CD80 | 3 / 6 | Diabetes mellitus type 1, Hypothyroidism, Systemic lupus erythematosus |
| CFB | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| CLEC16A | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| CLNK | 3 / 6 | Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| COL11A2 | 3 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis |
| CRP | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| CSNK2B | 3 / 6 | Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus |
| DGKQ | 3 / 6 | Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus |
| ERBB3 | 3 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis |
| FADS1 | 3 / 6 | Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Inflammatory bowel disease | KEGG | 49 / 66 | 5.6× | 1.82e-29 | 4.81e-26 ✓ sig. |
| Leishmaniasis | KEGG | 50 / 78 | 4.8× | 2.56e-25 | 4.18e-22 ✓ sig. |
| Type I diabetes mellitus | KEGG | 36 / 44 | 6.1× | 1.38e-24 | 2.07e-21 ✓ sig. |
| Th17 cell differentiation | KEGG | 58 / 109 | 4.0× | 2.91e-23 | 3.63e-20 ✓ sig. |
| Allograft rejection | KEGG | 32 / 39 | 6.1× | 4.66e-22 | 4.75e-19 ✓ sig. |
| Cytokine-cytokine receptor interaction | KEGG | 100 / 298 | 2.5× | 1.14e-19 | 7.54e-17 ✓ sig. |
| Toxoplasmosis | KEGG | 54 / 112 | 3.6× | 3.65e-19 | 2.22e-16 ✓ sig. |
| Herpes simplex virus 1 infection | KEGG | 72 / 182 | 3.0× | 5.90e-19 | 3.56e-16 ✓ sig. |
| Th1 and Th2 cell differentiation | KEGG | 48 / 93 | 3.9× | 9.54e-19 | 5.51e-16 ✓ sig. |
| Autoimmune thyroid disease | KEGG | 35 / 54 | 4.9× | 2.45e-18 | 1.34e-15 ✓ sig. |
| Tuberculosis | KEGG | 68 / 181 | 2.8× | 1.37e-16 | 5.43e-14 ✓ sig. |
| Rheumatoid arthritis | KEGG | 45 / 95 | 3.5× | 7.97e-16 | 2.85e-13 ✓ sig. |
| Interleukin-10 signaling | Reactome | 30 / 47 | 4.8× | 1.24e-15 | 4.25e-13 ✓ sig. |
| Intestinal immune network for IgA production | KEGG | 31 / 50 | 4.6× | 1.38e-15 | 4.69e-13 ✓ sig. |
| Graft-versus-host disease | KEGG | 29 / 45 | 4.8× | 2.56e-15 | 8.30e-13 ✓ sig. |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| immune response | GO:0006955 | 138 / 543 | 3.0× | 1.41e-32 | 8.68e-29 ✓ sig. |
| inflammatory response | GO:0006954 | 114 / 467 | 2.8× | 2.09e-25 | 6.81e-22 ✓ sig. |
| positive regulation of type II interferon production | GO:0032729 | 37 / 77 | 5.6× | 9.99e-20 | 1.51e-16 ✓ sig. |
| positive regulation of T cell proliferation | GO:0042102 | 33 / 67 | 5.7× | 3.68e-18 | 4.46e-15 ✓ sig. |
| positive regulation of transcription by RNA polymerase II | GO:0045944 | 191 / 1,208 | 1.8× | 1.75e-17 | 1.85e-14 ✓ sig. |
| positive regulation of MAPK cascade | GO:0043410 | 62 / 224 | 3.2× | 3.69e-17 | 3.61e-14 ✓ sig. |
| cell surface receptor signaling pathway via JAK-STAT | GO:0007259 | 32 / 67 | 5.6× | 3.79e-17 | 3.69e-14 ✓ sig. |
| immune system process | GO:0002376 | 156 / 943 | 1.9× | 3.85e-16 | 3.15e-13 ✓ sig. |
| positive regulation of smooth muscle cell proliferation | GO:0048661 | 27 / 52 | 6.1× | 7.44e-16 | 5.71e-13 ✓ sig. |
| positive regulation of T cell activation | GO:0050870 | 25 / 45 | 6.5× | 1.06e-15 | 7.87e-13 ✓ sig. |
| cytokine-mediated signaling pathway | GO:0019221 | 45 / 145 | 3.6× | 8.09e-15 | 5.24e-12 ✓ sig. |
| positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction | GO:0051897 | 57 / 217 | 3.1× | 8.66e-15 | 5.58e-12 ✓ sig. |
| positive regulation of tumor necrosis factor production | GO:0032760 | 39 / 113 | 4.0× | 9.91e-15 | 6.30e-12 ✓ sig. |
| positive regulation of cell population proliferation | GO:0008284 | 98 / 532 | 2.1× | 2.51e-13 | 1.26e-10 ✓ sig. |
| cell-cell signaling | GO:0007267 | 57 / 234 | 2.8× | 2.85e-13 | 1.42e-10 ✓ sig. |
Pairs within this cluster, by significance
| Disease A ⇵ | Disease B ⇵ | Similarity score ⇵ | Shared genes ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Rheumatoid arthritis | Systemic lupus erythematosus | 0.196 | 216 | 1.66e-139 | 2.83e-137 ✓ sig. |
| Diabetes mellitus type 1 | Rheumatoid arthritis | 0.197 | 188 | 1.83e-136 | 3.04e-134 ✓ sig. |
| Hypothyroidism | Rheumatoid arthritis | 0.166 | 148 | 3.98e-106 | 4.99e-104 ✓ sig. |
| Diabetes mellitus type 1 | Systemic lupus erythematosus | 0.163 | 159 | 9.62e-102 | 1.12e-99 ✓ sig. |
| Diabetes mellitus type 1 | Hypothyroidism | 0.144 | 107 | 1.44e-74 | 1.10e-72 ✓ sig. |
| Hypothyroidism | Systemic lupus erythematosus | 0.118 | 109 | 9.63e-62 | 6.03e-60 ✓ sig. |
| Rheumatoid arthritis | Sarcoidosis | 0.076 | 58 | 5.73e-38 | 2.27e-36 ✓ sig. |
| Diabetes mellitus type 1 | Sarcoidosis | 0.076 | 45 | 2.06e-30 | 6.34e-29 ✓ sig. |
| Hypothyroidism | Sarcoidosis | 0.067 | 34 | 2.30e-22 | 4.86e-21 ✓ sig. |
| Autoinflammatory-pancytopenia syndrome | Systemic lupus erythematosus | 0.002 | 1 | 4.25e-2 | 4.43e-2 ✓ sig. |