← Back to all clusters

Cluster 291

6 diseases · 10 shared-gene connections
6 Diseases
1,603 Unique genes
0.121 Avg. similarity score
Diabetes mellitus type 1 Most-connected disease (4 links)
Log in to save this analysis

Save This Analysis

Disease Searched: Systemic lupus erythematosus Pinned (dragged)
Node size = connections within this cluster · edge thickness = similarity strength · hover an edge for its details · click a node to select it and show its pairs below (double-click or Ctrl/⌘-click opens the disease page) · drag a node to pin it in place · scroll/pinch to zoom.

Member diseases (most connected first ‐ the cluster's core)

Disease ⇵ Connections in cluster ⇵ Significant partners ⇵ Curated genes ⇵
Diabetes mellitus type 1 4 4 477
Hypothyroidism 4 4 374
Rheumatoid arthritis 4 4 662
Systemic lupus erythematosus 4 4 654
Sarcoidosis 3 3 163
Autoinflammatory-pancytopenia syndrome 1 1 1

Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)

Gene ⇵ Member diseases ⇵ Linked diseases
ATXN2 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
BTNL2 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
C2 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
CTLA4 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
HLA-DMB 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
HLA-DOB 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
HLA-DPB1 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
HLA-DQA1 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
HLA-DQB1 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
HLA-DQB3 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
HLA-DRA 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
HLA-DRB1 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
HLA-DRB5 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
NOTCH4 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
SH2B3 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
TAP2 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
TNF 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
TNXB 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
TSBP1 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
TYK2 5 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis and 1 more
AGER 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
BACH2 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
BCL2L15 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
C1ORF141 4 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis, Systemic lupus erythematosus
CCDC88B 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis
CD226 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
ETS1 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
HLA-A 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
HLA-B 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis
HLA-C 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis
HLA-DOA 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
HLA-DPA1 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
ICOS 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
IKZF3 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
IL21 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
IL23R 4 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis, Systemic lupus erythematosus
IL2RA 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
INPP5B 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
LRIG2 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
LTA 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis
MAGI3 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
MSH5 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
NCR3 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis
NKX2-3 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
PHTF1 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
PPARG 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Sarcoidosis, Systemic lupus erythematosus
PSMB8 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
PSMB9 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
PSORS1C1 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
PTPN11 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
PTPN2 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
PTPN22 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
RAD51B 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
RASGRP1 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
RBM17 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
RSBN1 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
SFTA2 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
SLC11A1 4 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis, Systemic lupus erythematosus
SLC25A28 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
SOD2 4 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis, Systemic lupus erythematosus
STAT4 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
TAGAP 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
TAP1 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
UBASH3A 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Sarcoidosis
WHR1 4 / 6 Hypothyroidism, Rheumatoid arthritis, Sarcoidosis, Systemic lupus erythematosus
ZFP57 4 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
ACAP1 3 / 6 Diabetes mellitus type 1, Hypothyroidism, Systemic lupus erythematosus
ACOXL 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis
ADCY7 3 / 6 Diabetes mellitus type 1, Hypothyroidism, Systemic lupus erythematosus
AFF3 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
AIF1 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
ANKRD55 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
APOM 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis
ARID5B 3 / 6 Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
ATG16L1 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
ATG5 3 / 6 Rheumatoid arthritis, Sarcoidosis, Systemic lupus erythematosus
ATP6V1G3 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
BLTP1 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
BRD2 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis
BTN3A1 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
C1QTNF6 3 / 6 Diabetes mellitus type 1, Hypothyroidism, Systemic lupus erythematosus
C6ORF15 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis
CARD9 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
CARMIL1 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
CAT 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
CBLB 3 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis
CCHCR1 3 / 6 Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
CCR2 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis
CCR5 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Sarcoidosis
CD28 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
CD80 3 / 6 Diabetes mellitus type 1, Hypothyroidism, Systemic lupus erythematosus
CFB 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
CLEC16A 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
CLNK 3 / 6 Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
COL11A2 3 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis
CRP 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
CSNK2B 3 / 6 Hypothyroidism, Rheumatoid arthritis, Systemic lupus erythematosus
DGKQ 3 / 6 Diabetes mellitus type 1, Rheumatoid arthritis, Systemic lupus erythematosus
ERBB3 3 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis
FADS1 3 / 6 Diabetes mellitus type 1, Hypothyroidism, Rheumatoid arthritis
What do these columns mean?
Connections in cluster
How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
Significant partners
How many of those links are statistically significant (FDR q < 0.05).
Curated genes
Distinct curated genes linked to that disease in GeDiPNet.
Member diseases (Top shared genes)
How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
Overlap genes (x / y)
x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
Cluster gene count
Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
Fold enrichment
Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
P-value / FDR q-value
Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
Shared genes (Pairs within this cluster)
Number of curated genes the two diseases in that row have in common.
Similarity score (Pairs within this cluster)
Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.

Enriched Pathways (why this cluster is grouped, biologically)

Pathway ⇵ Source ⇵ Overlap genes ⇵ Fold enrichment ⇵ P-value ⇵ FDR q-value ⇵
Inflammatory bowel disease KEGG 49 / 66 5.6× 1.82e-29 4.81e-26 ✓ sig.
Leishmaniasis KEGG 50 / 78 4.8× 2.56e-25 4.18e-22 ✓ sig.
Type I diabetes mellitus KEGG 36 / 44 6.1× 1.38e-24 2.07e-21 ✓ sig.
Th17 cell differentiation KEGG 58 / 109 4.0× 2.91e-23 3.63e-20 ✓ sig.
Allograft rejection KEGG 32 / 39 6.1× 4.66e-22 4.75e-19 ✓ sig.
Cytokine-cytokine receptor interaction KEGG 100 / 298 2.5× 1.14e-19 7.54e-17 ✓ sig.
Toxoplasmosis KEGG 54 / 112 3.6× 3.65e-19 2.22e-16 ✓ sig.
Herpes simplex virus 1 infection KEGG 72 / 182 3.0× 5.90e-19 3.56e-16 ✓ sig.
Th1 and Th2 cell differentiation KEGG 48 / 93 3.9× 9.54e-19 5.51e-16 ✓ sig.
Autoimmune thyroid disease KEGG 35 / 54 4.9× 2.45e-18 1.34e-15 ✓ sig.
Tuberculosis KEGG 68 / 181 2.8× 1.37e-16 5.43e-14 ✓ sig.
Rheumatoid arthritis KEGG 45 / 95 3.5× 7.97e-16 2.85e-13 ✓ sig.
Interleukin-10 signaling Reactome 30 / 47 4.8× 1.24e-15 4.25e-13 ✓ sig.
Intestinal immune network for IgA production KEGG 31 / 50 4.6× 1.38e-15 4.69e-13 ✓ sig.
Graft-versus-host disease KEGG 29 / 45 4.8× 2.56e-15 8.30e-13 ✓ sig.

Enriched GO Terms (Biological Process, a second line of biological evidence)

GO term ⇵ GO ID ⇵ Overlap genes ⇵ Fold enrichment ⇵ P-value ⇵ FDR q-value ⇵
immune response GO:0006955 138 / 543 3.0× 1.41e-32 8.68e-29 ✓ sig.
inflammatory response GO:0006954 114 / 467 2.8× 2.09e-25 6.81e-22 ✓ sig.
positive regulation of type II interferon production GO:0032729 37 / 77 5.6× 9.99e-20 1.51e-16 ✓ sig.
positive regulation of T cell proliferation GO:0042102 33 / 67 5.7× 3.68e-18 4.46e-15 ✓ sig.
positive regulation of transcription by RNA polymerase II GO:0045944 191 / 1,208 1.8× 1.75e-17 1.85e-14 ✓ sig.
positive regulation of MAPK cascade GO:0043410 62 / 224 3.2× 3.69e-17 3.61e-14 ✓ sig.
cell surface receptor signaling pathway via JAK-STAT GO:0007259 32 / 67 5.6× 3.79e-17 3.69e-14 ✓ sig.
immune system process GO:0002376 156 / 943 1.9× 3.85e-16 3.15e-13 ✓ sig.
positive regulation of smooth muscle cell proliferation GO:0048661 27 / 52 6.1× 7.44e-16 5.71e-13 ✓ sig.
positive regulation of T cell activation GO:0050870 25 / 45 6.5× 1.06e-15 7.87e-13 ✓ sig.
cytokine-mediated signaling pathway GO:0019221 45 / 145 3.6× 8.09e-15 5.24e-12 ✓ sig.
positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction GO:0051897 57 / 217 3.1× 8.66e-15 5.58e-12 ✓ sig.
positive regulation of tumor necrosis factor production GO:0032760 39 / 113 4.0× 9.91e-15 6.30e-12 ✓ sig.
positive regulation of cell population proliferation GO:0008284 98 / 532 2.1× 2.51e-13 1.26e-10 ✓ sig.
cell-cell signaling GO:0007267 57 / 234 2.8× 2.85e-13 1.42e-10 ✓ sig.

Pairs within this cluster, by significance

Disease A ⇵ Disease B ⇵ Similarity score ⇵ Shared genes ⇵ P-value ⇵ FDR q-value ⇵
Rheumatoid arthritis Systemic lupus erythematosus 0.196 216 1.66e-139 2.83e-137 ✓ sig.
Diabetes mellitus type 1 Rheumatoid arthritis 0.197 188 1.83e-136 3.04e-134 ✓ sig.
Hypothyroidism Rheumatoid arthritis 0.166 148 3.98e-106 4.99e-104 ✓ sig.
Diabetes mellitus type 1 Systemic lupus erythematosus 0.163 159 9.62e-102 1.12e-99 ✓ sig.
Diabetes mellitus type 1 Hypothyroidism 0.144 107 1.44e-74 1.10e-72 ✓ sig.
Hypothyroidism Systemic lupus erythematosus 0.118 109 9.63e-62 6.03e-60 ✓ sig.
Rheumatoid arthritis Sarcoidosis 0.076 58 5.73e-38 2.27e-36 ✓ sig.
Diabetes mellitus type 1 Sarcoidosis 0.076 45 2.06e-30 6.34e-29 ✓ sig.
Hypothyroidism Sarcoidosis 0.067 34 2.30e-22 4.86e-21 ✓ sig.
Autoinflammatory-pancytopenia syndrome Systemic lupus erythematosus 0.002 1 4.25e-2 4.43e-2 ✓ sig.