Gene Gene information from NCBI Gene database.
Entrez ID 5698
Gene name Proteasome 20S subunit beta 9
Gene symbol PSMB9
Synonyms (NCBI Gene)
LMP2PRAAS3PRAAS6PSMB6iRING12beta1i
Chromosome 6
Chromosome location 6p21.32
Summary The proteasome is a multicatalytic proteinase complex with a highly ordered ring-shaped 20S core structure. The core structure is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs369359789 G>A Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
101
miRTarBase ID miRNA Experiments Reference
MIRT683914 hsa-miR-216a-5p HITS-CLIP 23313552
MIRT683913 hsa-miR-6890-3p HITS-CLIP 23313552
MIRT683912 hsa-miR-6736-3p HITS-CLIP 23313552
MIRT683911 hsa-miR-660-3p HITS-CLIP 23313552
MIRT683910 hsa-miR-939-3p HITS-CLIP 23313552
Transcription factors Transcription factors information provided by TRRUST V2 database.
6
Transcription factor Regulation Reference
IRF1 Activation 18694960
IRF1 Unknown 10764778;10921891;16703666;9632673
NFKB1 Unknown 18694960
RELA Unknown 18694960
SEC14L2 Unknown 7699330
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
24
GO ID Ontology Definition Evidence Reference
GO:0000502 Component Proteasome complex IEA
GO:0000502 Component Proteasome complex TAS 8666937
GO:0002376 Process Immune system process IEA
GO:0004175 Function Endopeptidase activity IBA
GO:0004298 Function Threonine-type endopeptidase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
177045 9546 ENSG00000240065
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P28065
Protein name Proteasome subunit beta type-9 (EC 3.4.25.1) (Low molecular mass protein 2) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (Proteasome chain 7) (Proteasome subunit beta-1i) (Really interesting new gene 12 protein)
Protein function The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH (PubMed:33727065, PubMed:34819510). The
PDB 6AVO , 6E5B , 7AWE , 7B12 , 9FST
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00227 Proteasome 17 198 Proteasome subunit Domain
Sequence
Sequence length 219
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
36
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Proteasome-associated autoinflammatory syndrome 6 Pathogenic rs2127399518 RCV004556086
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
proteasome-associated autoinflammatory syndrome with immunodeficiency (PRAAS-ID) Pathogenic rs2127399518 RCV001732235
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANKYLOSING SPONDYLITIS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOIMMUNE DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acanthosis Nigricans Acanthosis Nigricans HPO_DG
★☆☆☆☆
Found in Text Mining only
Acrodermatitis Dermatitis CTD_human_DG 27258892
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 24377540
★☆☆☆☆
Found in Text Mining only
Adult Diffuse Large B-Cell Lymphoma B-cell Lymphoma BEFREE 23628820
★☆☆☆☆
Found in Text Mining only
Adult Hodgkin Lymphoma Hodgkin Lymphoma BEFREE 29315015, 30396848
★☆☆☆☆
Found in Text Mining only
Alveolitis Extrinsic Allergic Extrinsic allergic alveolitis Pubtator 20153157 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Ankylosing spondylitis Ankylosing Spondylitis BEFREE 10648037, 22034108, 31702633, 7763114, 8311558, 9306872, 9348140
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Arthritis Arthritis Pubtator 7763114 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis HPO_DG
★☆☆☆☆
Found in Text Mining only