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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Ischemic heart disease Kidney failure
41 genes
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19 of 41 corroborated by 2+ sources
TP53(1), AHSG(1), ABCA1(2), ACE(2), APOE(1), EPHX2(1), MLXIPL(2), MMP3(1), SERPINE1(2), SREBF1(2), VEGFA(1), NOS3(1) +29 more
0.108 0.241 1.28e-36 4.94e-35 ✓ sig. Cluster 139 →
Respiratory system disease Seasonal allergic rhinitis
34 genes
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RERE(1), CEBPA(1), CCR7(1), EMSY(1), FCER1G(1), HLA-DQA1(1), ITGB8(1), JAZF1(1), NFATC2(1), PLCL1(1), RORA(1), SLC7A10(1) +22 more
0.110 0.340 9.02e-37 3.49e-35 ✓ sig. —
Congenital ear anomaly nonsyndromic genetic hearing loss
19 genes
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19 of 19 corroborated by 2+ sources
CEACAM16(2), MYO15A(2), OTOF(2), PCDH15(2), TMC1(2), COL11A2(2), MYO6(2), CDH23(2), MYO7A(2), GJB2(2), TECTA(2), CDC14A(2) +7 more
0.200 0.613 8.95e-37 3.48e-35 ✓ sig. Cluster 26 →
Cytochrome c oxidase deficiency Mitochondrial disease
20 genes
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20 of 20 corroborated by 2+ sources
COX5A(2), LRPPRC(4), SCO2(4), SCO1(5), COA3(3), COA5(3), COA6(3), COX15(5), SURF1(3), COX14(4), FASTKD2(3), PET100(2) +8 more
0.082 1.000 3.82e-37 1.49e-35 ✓ sig. Cluster 50 →
Lung disease Obstructive airway disease
27 genes
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13 of 27 corroborated by 2+ sources
SERPINA1(3), ACE(2), GSTP1(1), GSTT1(1), IL1B(1), TNF(2), GSTM1(1), CHRNA3(2), PTGS2(2), HIF1A(2), TGFB1(2), MMP9(1) +15 more
0.154 0.270 3.45e-37 1.35e-35 ✓ sig. Cluster 119 →
Cutaneous squamous cell carcinoma Keratinocyte carcinoma
20 genes
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BNC2(1), EPB41L1(1), FOXP1(1), HLA-DQA1(1), TRPS1(1), RALY(1), IRF4(1), KRT5(1), BACH2(1), CTLA4(1), MICA(1), LPP(1) +8 more
0.208 0.526 2.04e-37 7.95e-36 ✓ sig. Cluster 29 →
Night blindness, congenital stationary Oguchi disease
13 genes
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13 of 13 corroborated by 2+ sources
CACNA1F(3), PDE6B(3), TRPM1(3), GUCY2D(4), RHO(3), GNB3(3), GNAT1(3), SAG(6), GRM6(3), LRIT3(3), NYX(3), SLC24A1(3) +1 more
0.481 0.929 1.66e-37 6.51e-36 ✓ sig. Cluster 151 →
Breast neoplasms Hepatocellular carcinoma
98 genes
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19 of 98 corroborated by 2+ sources
CYP17A1(1), DPYD(1), COMT(1), MAP3K1(2), CAT(1), PTEN(1), TERT(2), TP53(4), ADAMTS1(1), ARID1A(1), EGFR(1), EXO1(1) +86 more
0.092 0.190 9.89e-38 3.88e-36 ✓ sig. —
Long qt syndrome Wolff-parkinson-white syndrome
23 genes
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9 of 23 corroborated by 2+ sources
JUP(1), RBM20(1), TBX5(2), TRPM4(1), DSP(1), DPP6(1), KCNJ2(2), CACNA1C(6), MYH6(1), CASQ2(1), KCNH2(7), KCNQ1(7) +11 more
0.176 0.451 9.13e-38 3.59e-36 ✓ sig. Cluster 4 →
Diabetic neuropathy Kidney disease
57 genes
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22 of 57 corroborated by 2+ sources
INS(2), COL4A3(2), ACE(2), AFF3(1), AGT(2), LSAMP(1), NYAP2(1), TCF7L2(1), TENM2(1), VEGFA(3), CTSD(2), EPO(2) +45 more
0.095 0.244 6.75e-38 2.66e-36 ✓ sig. —
Giant cell glioblastoma Gliosarcoma
12 genes
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FGFR3(1), TP53(1), EGFR(1), MGMT(1), SEPTIN14(1), TACC3(1), PPARG(1), IDH1(1), FGFR1(1), NFKBIA(1), LZTR1(1), TACC1(1)
0.667 0.923 6.41e-38 2.52e-36 ✓ sig. —
Rheumatoid arthritis Sarcoidosis
58 genes
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18 of 58 corroborated by 2+ sources
SH2B3(1), BTNL2(5), HLA-C(1), HLA-DQA1(2), HLA-DQB3(1), HLA-DRA(1), HLA-DRB1(5), HLA-DRB5(1), OR5V1(1), PLCL1(1), PPT2(1), TNXB(1) +46 more
0.076 0.356 5.73e-38 2.26e-36 ✓ sig. Cluster 28 →
Hodgkin lymphoma Multiple myeloma
31 genes
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4 of 31 corroborated by 2+ sources
DTNB(1), GRAMD1B(1), HLA-DQA1(1), HLA-DRB1(1), ULK4(2), BCL2(2), HLA-DQB1(1), EXOC2(1), HBS1L(1), IRF4(2), EOMES(1), SP140(1) +19 more
0.138 0.279 5.27e-38 2.09e-36 ✓ sig. Cluster 225 →
Inflammatory skin disease Psoriasis vulgaris
22 genes
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IFIH1(1), ELMO1(1), TNIP1(1), FYN(1), TRAF3IP2(1), ERAP1(1), FAP(1), GRHL3(1), IFNLR1(1), IL23R(1), KCNH7(1), LCE3A(1) +10 more
0.202 0.407 4.37e-38 1.73e-36 ✓ sig. —
Developmental and epileptic encephalopathy Global developmental delay
53 genes
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39 of 53 corroborated by 2+ sources
FOXG1(2), UBE3A(1), WWOX(6), PTEN(1), ATP1A3(5), ACTL6B(5), CACNA1A(5), GRIN2B(4), KCNQ2(7), KMT2C(1), MAF(1), RBFOX1(1) +41 more
0.099 0.241 3.77e-38 1.50e-36 ✓ sig. Cluster 6 →
Aortic aneurysm Marfan syndrome
20 genes
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19 of 20 corroborated by 2+ sources
FBN1(7), ARIH1(2), FBN2(2), PRKG1(5), SLC2A10(2), TGFB2(3), THSD4(4), SOD2(2), FLNA(1), SMAD3(2), ACTA2(5), MMP9(2) +8 more
0.233 0.465 3.65e-38 1.45e-36 ✓ sig. Cluster 12 →
Gout Hyperuricemia
42 genes
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7 of 42 corroborated by 2+ sources
RREB1(1), BAZ1B(1), HNF4G(1), NFAT5(1), SLC2A9(3), VEGFA(1), ALDH2(1), IGF1R(1), MALRD1(1), TGFB1(2), XDH(3), UMOD(1) +30 more
0.050 0.656 2.92e-38 1.16e-36 ✓ sig. —
Congenital ear anomaly Isolated sensorineural deafness
21 genes
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CEACAM16(1), MYO15A(1), OTOF(1), PCDH15(1), TMC1(1), SLC26A4(1), COL11A2(1), MYO6(1), CDH23(1), MYO7A(1), GJB2(1), MITF(1) +9 more
0.162 0.677 2.89e-38 1.16e-36 ✓ sig. Cluster 26 →
Congenital ear anomaly Nonsyndromic hearing loss
21 genes
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16 of 21 corroborated by 2+ sources
CEACAM16(3), MYO15A(3), OTOF(1), PCDH15(3), TMC1(4), SLC26A4(3), COL11A2(3), MYO6(4), CDH23(3), MYO7A(4), GJB2(4), TBCEL-TECTA(1) +9 more
0.163 0.677 2.38e-38 9.54e-37 ✓ sig. Cluster 26 →
Catecholaminergic polymorphic ventricular tachycardia Long qt syndrome
18 genes
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13 of 18 corroborated by 2+ sources
DSG2(1), PKP2(2), TRPM4(1), CALM1(7), DSP(1), KCNJ2(3), TECRL(6), CALM2(7), CALM3(7), CASQ2(7), KCNH2(7), LMNA(1) +6 more
0.171 0.900 2.33e-38 9.33e-37 ✓ sig. Cluster 4 →
Squamous cell carcinoma Upper aerodigestive tract neoplasm
62 genes
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3 of 62 corroborated by 2+ sources
CHEK2(1), TP53(2), ABT1(1), EMB(1), GLIS3(1), GRIK1(1), HCN1(1), HLA-DQA1(1), HLA-DRA(1), HLA-DRB1(1), NPAS3(1), NYAP2(1) +50 more
0.070 0.385 2.15e-38 8.66e-37 ✓ sig. —
autosomal recessive limb-girdle muscular dystrophy Limb girdle muscular dystrophy
14 genes
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14 of 14 corroborated by 2+ sources
SGCA(5), HMGCR(4), TRAPPC11(6), ANO5(4), SGCD(6), DYSF(6), SGCG(6), TCAP(4), POPDC3(3), CAPN3(7), JAG2(3), POGLUT1(4) +2 more
0.359 1.000 2.01e-38 8.10e-37 ✓ sig. Cluster 14 →
Diabetes mellitus Hyperlipidemia
42 genes
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12 of 42 corroborated by 2+ sources
ALDH1A2(1), APOB(3), APOC1(1), APOE(3), BCL3(1), FADS1(1), FADS2(1), HLA-C(1), HLA-DQA1(1), LIPC(6), MLXIPL(1), NYAP2(1) +30 more
0.106 0.298 1.19e-38 4.81e-37 ✓ sig. —
Alzheimer disease Diabetes mellitus type 2
681 genes
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112 of 681 corroborated by 2+ sources
WT1(2), HMGA2(1), ANKRD11(1), HNF1B(6), KANSL1(1), NFIX(1), HSPG2(1), RERE(1), ARVCF(1), JMJD1C(1), RREB1(1), INS(3) +669 more
0.147 0.307 6.26e-39 2.53e-37 ✓ sig. Cluster 2 →
Peroxisome biogenesis disorder Zellweger spectrum disorder
13 genes
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13 of 13 corroborated by 2+ sources
PEX14(7), PEX6(7), PEX10(7), PEX16(7), PEX2(7), PEX5(6), PEX11B(6), PEX1(7), PEX13(7), PEX26(7), PEX12(7), PEX19(7) +1 more
0.520 1.000 5.71e-39 2.31e-37 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.