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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Arteriosclerosis Ischemic heart disease
17 genes
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3 of 17 corroborated by 2+ sources
ABCG8(1), APOB(1), APOE(2), LDLR(1), MMP12(1), MMP3(1), NOS3(2), ESR1(1), IL10(1), PON1(1), TLR4(1), PTGS2(1) +5 more
0.087 0.415 2.87e-23 6.36e-22 ✓ sig. —
Lymphocytic leukemia Lymphoid leukemia
14 genes
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TERT(1), GRAMD1B(1), FAS(1), HLA-DQB1(1), EXOC2(1), IRF4(1), SP140(1), IRF8(1), ACOXL(1), DMRTA1(1), PALD1(1), MYNN(1) +2 more
0.108 0.500 2.73e-23 6.06e-22 ✓ sig. Cluster 225 →
Catecholaminergic polymorphic ventricular tachycardia Wolff-parkinson-white syndrome
11 genes
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4 of 11 corroborated by 2+ sources
TRPM4(1), DSP(1), KCNJ2(3), CASQ2(7), KCNH2(1), LMNA(1), RYR2(7), SCN5A(1), MYBPC3(1), ANK2(3), LAMA4(1)
0.180 0.550 2.72e-23 6.04e-22 ✓ sig. Cluster 4 →
Kidney failure Nonalcoholic fatty liver disease
39 genes
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38 of 39 corroborated by 2+ sources
INS(2), CAT(2), SERPINA1(3), ACE(2), APOE(2), ATP5F1B(2), CYP1A2(3), MLXIPL(3), SCARB1(2), SREBF1(2), VEGFA(2), GSTP1(2) +27 more
0.074 0.155 2.61e-23 5.82e-22 ✓ sig. —
Ectrodactyly Split hand-foot malformation
7 genes
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6 of 7 corroborated by 2+ sources
TP63(7), DLX5(7), MAP3K20(6), EPS15L1(2), DLX6(1), WNT10B(5), FBXW4(2)
0.583 0.875 2.36e-23 5.26e-22 ✓ sig. —
Psoriasis vulgaris Psoriatic arthritis
15 genes
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4 of 15 corroborated by 2+ sources
IFIH1(1), HLA-C(2), TNIP1(1), RUNX3(1), TRAF3IP2(3), FAP(1), HLA-B(1), IL23R(1), MUC22(1), NOS2(3), TNFAIP3(1), TYK2(1) +3 more
0.133 0.278 2.23e-23 4.96e-22 ✓ sig. —
Dyskeratosis congenita Hoyeraal hreidarsson syndrome
8 genes
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7 of 8 corroborated by 2+ sources
ACD(6), RTEL1(6), TERT(8), PARN(6), POT1(1), DKC1(8), TINF2(7), DCLRE1B(4)
0.296 1.000 2.00e-23 4.46e-22 ✓ sig. Cluster 64 →
Melas syndrome Rod-cone dystrophy
10 genes
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5 of 10 corroborated by 2+ sources
ND1(2), ND2(1), ATP6(1), COX3(2), ATP8(1), COX1(2), ND5(2), COX2(2), ND3(1), ND4(1)
0.238 0.556 1.95e-23 4.35e-22 ✓ sig. Cluster 32 →
Brugada syndrome Conduction disorder of the heart
12 genes
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7 of 12 corroborated by 2+ sources
PKP2(4), TRPM4(4), TTR(1), DSP(1), CACNA1C(7), KCNH2(3), KCNQ1(1), RYR2(1), SCN5A(8), TTN(1), ANK2(3), SCN1B(6)
0.158 0.500 1.88e-23 4.21e-22 ✓ sig. Cluster 4 →
Congenital muscular dystrophy Muscle eye brain disease
9 genes
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9 of 9 corroborated by 2+ sources
GMPPB(3), LARGE1(2), CRPPA(3), POMT1(3), POMT2(3), POMGNT1(4), FKRP(4), FKTN(4), POMK(2)
0.310 0.600 1.85e-23 4.15e-22 ✓ sig. Cluster 14 →
Anophthalmia/microphthalmia-esophageal atresia syndrome Microphthalmia
11 genes
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10 of 11 corroborated by 2+ sources
BMP4(6), PAX6(3), SOX2(5), STRA6(3), SIX6(4), C14orf39(1), OTX2(4), PORCN(3), RAX(4), VAX1(4), VSX2(6)
0.208 0.440 1.82e-23 4.08e-22 ✓ sig. Cluster 56 →
Bladder calculus Ureterolithiasis
9 genes
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ALPL(1), BCAS3(1), PDILT(1), ABCG2(1), RGS14(1), BCAS1(1), CYP24A1(1), KLK15(1), RSPH14(1)
0.220 0.900 1.58e-23 3.55e-22 ✓ sig. Cluster 178 →
Anemia Polycythemia
12 genes
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7 of 12 corroborated by 2+ sources
HBA1(2), ACE(1), H2BC4(1), HFE(1), EPO(3), EPOR(2), GH1(2), HBB(3), HK1(2), JAK2(3), PRKCE(1), TMPRSS6(1)
0.130 0.632 1.50e-23 3.36e-22 ✓ sig. Cluster 105 →
Celiac disease Oligoarticular juvenile idiopathic arthritis
28 genes
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15 of 28 corroborated by 2+ sources
NFIA(1), RUNX1(1), ANKRD55(2), HLA-DQA1(4), HLA-DRB1(2), UBE2L3(1), IL2(1), RUNX3(3), ATXN2(1), HLA-DQB1(4), IRF1(1), SMAD3(2) +16 more
0.083 0.165 1.46e-23 3.28e-22 ✓ sig. —
Cutis laxa Darier disease
8 genes
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8 of 8 corroborated by 2+ sources
ALDH18A1(6), ATP6V0A2(8), ELN(7), EFEMP2(7), FBLN5(6), ATP6V1A(8), ATP6V1E1(7), PYCR1(7)
0.364 0.889 1.45e-23 3.26e-22 ✓ sig. Cluster 80 →
Benign pemphigus Cutis laxa
8 genes
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8 of 8 corroborated by 2+ sources
ALDH18A1(6), ATP6V0A2(8), ELN(7), EFEMP2(7), FBLN5(6), ATP6V1A(8), ATP6V1E1(7), PYCR1(7)
0.364 0.889 1.45e-23 3.26e-22 ✓ sig. Cluster 80 →
Diabetic eye disease Diabetic polyneuropathy
9 genes
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CDKAL1(1), JAZF1(1), NYAP2(1), TCF7L2(1), HLA-DQB1(1), FTO(1), KCNQ1(1), IGF2BP2(1), WFS1(1)
0.184 1.000 1.25e-23 2.83e-22 ✓ sig. Cluster 73 →
Maturity-onset diabetes of the young (mody) Permanent neonatal diabetes mellitus
9 genes
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8 of 9 corroborated by 2+ sources
HNF1B(2), INS(6), INS-IGF2(1), ABCC8(5), KCNJ11(7), GCK(7), PTF1A(5), PDX1(7), NEUROD1(5)
0.310 0.643 1.22e-23 2.75e-22 ✓ sig. Cluster 36 →
Breast neoplasms Mesothelioma
38 genes
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2 of 38 corroborated by 2+ sources
WT1(3), CAT(1), TP53(1), EGFR(1), SPP1(1), BCL2(1), ESR1(2), PARP1(1), SOD2(1), IL6(1), EFEMP1(1), PDGFA(1) +26 more
0.061 0.262 1.16e-23 2.63e-22 ✓ sig. Cluster 5 →
Nasal polyp Seasonal allergic rhinitis
15 genes
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1 of 15 corroborated by 2+ sources
ERBB3(1), HLA-DQA1(1), RPS26(1), BACH2(1), CLEC16A(1), HLA-B(1), IL18R1(1), IL7R(1), ALOX15(2), IL1RL1(1), IL33(1), RANBP6(1) +3 more
0.120 0.385 1.14e-23 2.58e-22 ✓ sig. Cluster 137 →
Constitutional mismatch repair deficiency Lynch syndrome
10 genes
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5 of 10 corroborated by 2+ sources
MSH2(8), MSH6(8), APC(1), TGFBR2(5), RNASET2(1), PMS2(7), TAF1B(1), MLH1(8), ASTE1(1), SLC22A9(1)
0.189 0.769 1.13e-23 2.57e-22 ✓ sig. Cluster 166 →
Conduction disorder of the heart Left ventricular noncompaction cardiomyopathy
11 genes
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DMD(1), DSG2(1), JUP(1), PKP2(1), RBM20(1), DSP(1), MYH6(1), RYR2(1), SCN5A(1), MYH7(1), TTN(1)
0.212 0.458 1.02e-23 2.32e-22 ✓ sig. Cluster 4 →
Congenital brain malformation Joubert syndrome
11 genes
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11 of 11 corroborated by 2+ sources
ARL3(5), TMEM216(6), TMEM237(6), KIAA0586(5), KIAA0753(4), IFT74(4), INPP5E(6), TOGARAM1(5), B9D2(2), TMEM218(5), FAM149B1(3)
0.169 0.647 9.62e-24 2.19e-22 ✓ sig. —
Congenital hypoplasia of part of brain Joubert syndrome
11 genes
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11 of 11 corroborated by 2+ sources
ARL3(5), TMEM216(6), TMEM237(6), KIAA0586(5), KIAA0753(4), IFT74(4), INPP5E(6), TOGARAM1(5), B9D2(2), TMEM218(5), FAM149B1(3)
0.169 0.647 9.62e-24 2.19e-22 ✓ sig. —
Cystic fibrosis Obstructive airway disease
17 genes
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5 of 17 corroborated by 2+ sources
SERPINA1(3), NOS3(1), GSTT1(1), HMOX1(3), HSPA1A(1), IL1B(1), MBL2(1), TNF(1), EPHX1(1), GSTM1(1), PTGS2(1), SERPINA3(1) +5 more
0.116 0.274 9.12e-24 2.08e-22 ✓ sig. Cluster 119 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.