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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Maturity-onset diabetes of the young (mody) Neonatal diabetes mellitus
6 genes
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5 of 6 corroborated by 2+ sources
INS(5), INS-IGF2(1), ABCC8(3), KCNJ11(6), GCK(6), PDX1(6)
0.171 0.353 6.69e-14 8.76e-13 ✓ sig. Cluster 36 →
Cutaneous mastocytosis Systemic mastocytosis
6 genes
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1 of 6 corroborated by 2+ sources
HBE1(1), HBG2(1), KIT(3), ABCA2(1), OR51B5(1), OR51Q1(1)
0.171 0.353 6.69e-14 8.76e-13 ✓ sig. Cluster 235 →
Nuclear cataract Posterior polar cataract
5 genes
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5 of 5 corroborated by 2+ sources
EPHA2(3), CRYAB(2), MIP(3), CRYBA1(2), GJA3(3)
0.227 0.625 6.64e-14 8.72e-13 ✓ sig. Cluster 43 →
Ankylosing spondylitis Iga nephropathy
26 genes
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11 of 26 corroborated by 2+ sources
ACE(1), ANKRD55(1), ETS1(1), HLA-DQA1(2), HLA-DRB1(2), IKZF1(1), TENM3(1), TTC33(1), PLAU(2), TAP2(2), OSMR(1), HLA-DQB1(2) +14 more
0.053 0.128 6.60e-14 8.66e-13 ✓ sig. Cluster 28 →
Polydactyly Syndactyly
7 genes
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6 of 7 corroborated by 2+ sources
LMBR1(4), GLI3(4), TULP1(1), HOXD13(5), SHH(2), IQCE(4), CIBAR1(5)
0.127 0.318 6.28e-14 8.25e-13 ✓ sig. —
Brain injuries Status epilepticus
11 genes
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11 of 11 corroborated by 2+ sources
VEGFA(2), BDNF(2), EPO(2), TNF(2), FOS(2), PTGS2(2), CCL2(2), NOS2(2), IL1RN(2), JUN(2), BECN1(2)
0.079 0.157 6.17e-14 8.12e-13 ✓ sig. Cluster 114 →
Chronic obstructive pulmonary disease Cystic fibrosis
9 genes
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8 of 9 corroborated by 2+ sources
SERPINA1(3), NOS3(2), AGER(1), HMOX1(4), TNF(2), EPHX1(2), TGFB1(5), CYP1A1(2), MIF(3)
0.094 0.214 6.10e-14 8.03e-13 ✓ sig. Cluster 119 →
Leber congenital amaurosis Senior-loken syndrome
7 genes
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6 of 7 corroborated by 2+ sources
NPHP4(6), NPHP3(3), NPHP1(5), CEP290(7), WDR19(5), IQCB1(6), RLIG1(1)
0.089 0.538 6.08e-14 8.00e-13 ✓ sig. —
Noonan syndrome noonan syndrome with multiple lentigines
5 genes
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5 of 5 corroborated by 2+ sources
BRAF(7), NRAS(7), RAF1(7), PTPN11(7), MAP2K1(6)
0.132 1.000 6.05e-14 7.97e-13 ✓ sig. Cluster 42 →
Fatty liver, alcoholic Ventricular dysfunction
10 genes
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10 of 10 corroborated by 2+ sources
INS(2), NFE2L2(2), SOD2(2), TLR4(2), TNF(2), AKT1(2), SIRT1(2), ADRB2(2), LEPR(2), SIRT6(2)
0.081 0.217 5.96e-14 7.86e-13 ✓ sig. —
Hyperinsulinism monogenic diabetes
6 genes
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6 of 6 corroborated by 2+ sources
INS(3), ABCC8(5), HNF4A(4), KCNJ11(4), GCK(4), HNF1A(4)
0.128 0.600 5.91e-14 7.79e-13 ✓ sig. Cluster 36 →
Bone fracture Osteoporosis
13 genes
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3 of 13 corroborated by 2+ sources
AXIN1(1), RSPO3(1), CYP19A1(3), ESR1(2), WNT16(1), CCDC170(1), SOX6(1), SEM1(1), DOK6(1), LRP5(4), AQP1(1), SFRP4(1) +1 more
0.064 0.191 5.84e-14 7.71e-13 ✓ sig. —
Hypertriglyceridemia Lipoprotein lipase deficiency
7 genes
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6 of 7 corroborated by 2+ sources
APOB(3), LPL(5), ZPR1(2), GCKR(3), CETP(2), TDRD15(1), APOA5(4)
0.135 0.250 5.77e-14 7.62e-13 ✓ sig. Cluster 254 →
Anencephaly Aprosencephaly
4 genes
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2 of 4 corroborated by 2+ sources
TRIM36(4), MTRR(1), NUAK2(3), RPGRIP1L(1)
0.400 1.000 5.38e-14 7.11e-13 ✓ sig. Cluster 121 →
Lymphoma Multiple myeloma
12 genes
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3 of 12 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(1), BCL2(2), CSF2(1), EPHX1(1), HLA-DQB1(1), EXOC2(1), IRF4(2), CSF3(1), IFNA2(1), CDKN2A(2), TNFSF8(1)
0.065 0.226 4.96e-14 6.57e-13 ✓ sig. —
Fatty liver Hyperinsulinism
10 genes
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10 of 10 corroborated by 2+ sources
INS(2), MTTP(2), LEP(2), TNF(2), GPX1(2), CCL2(2), COL3A1(2), UCP2(3), LEPR(2), NEIL1(2)
0.079 0.238 4.93e-14 6.53e-13 ✓ sig. —
Atrophic macular degeneration C3 glomerulonephritis
6 genes
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6 of 6 corroborated by 2+ sources
CFHR1(3), CFI(3), C3(3), CFB(3), CFH(4), CFHR5(6)
0.102 0.750 4.89e-14 6.47e-13 ✓ sig. —
Atrophic macular degeneration Mesangiocapillary glomerulonephritis
6 genes
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6 of 6 corroborated by 2+ sources
CFHR1(2), CFI(2), C3(2), CFB(2), CFH(2), CFHR5(2)
0.102 0.750 4.89e-14 6.47e-13 ✓ sig. —
Brain ischemia Necrosis
10 genes
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10 of 10 corroborated by 2+ sources
CAT(2), IL1B(2), MTHFR(2), SOD2(2), TNF(2), IL6(2), SOD1(2), IL17A(2), NOS2(2), IL1RN(2)
0.086 0.182 4.80e-14 6.37e-13 ✓ sig. Cluster 114 →
Osteopetrosis Osteosclerosis
5 genes
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5 of 5 corroborated by 2+ sources
TNFRSF11A(6), LRP5(6), CLCN7(7), TCIRG1(8), TNFSF11(5)
0.238 0.625 4.80e-14 6.36e-13 ✓ sig. Cluster 108 →
Distal hereditary motor neuropathy Motor neuron disease
9 genes
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7 of 9 corroborated by 2+ sources
SETX(3), TRPV4(3), DCTN1(7), DYNC1H1(2), NEFL(1), PLEKHG5(3), GARS1(6), MPZ(1), IGHMBP2(2)
0.091 0.250 4.75e-14 6.31e-13 ✓ sig. Cluster 15 →
Corneal disease Corneal dystrophy
6 genes
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2 of 6 corroborated by 2+ sources
COL5A1(1), TCF4(6), RXRA(1), COL24A1(1), LAMB1(1), KRT3(4)
0.154 0.500 4.49e-14 5.96e-13 ✓ sig. —
Mitochondrial dna depletion syndrome Progressive external ophthalmoplegia
6 genes
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6 of 6 corroborated by 2+ sources
RRM2B(7), POLG2(6), POLG(7), TWNK(5), SLC25A4(7), TK2(7)
0.162 0.462 4.37e-14 5.81e-13 ✓ sig. —
Stroke Venous thromboembolism
34 genes
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10 of 34 corroborated by 2+ sources
WWOX(1), SH2B3(2), FGA(3), AGBL1(1), FADS1(1), FADS2(1), GRK5(1), KALRN(1), LRAT(1), NALF1(1), PLCG2(1), F2(3) +22 more
0.054 0.105 4.35e-14 5.78e-13 ✓ sig. —
Polymyositis Sjogren syndrome
8 genes
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6 of 8 corroborated by 2+ sources
DGKQ(3), THSD7A(1), TNF(2), IL6(2), HLA-DQB1(2), PTPN22(2), STAT4(3), BLK(1)
0.093 0.364 4.13e-14 5.50e-13 ✓ sig. Cluster 25 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.