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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Myasthenia gravis Thyroid disease
8 genes
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3 of 8 corroborated by 2+ sources
FAM76B(1), HLA-DQA1(2), ATXN2(1), HLA-DQB1(2), CEP43(1), CTLA4(1), PTPN22(2), RNF39(1)
0.095 0.211 5.12e-13 6.36e-12 ✓ sig. —
Polymorphic catecholaminergic ventricular tachycardia Ventricular fibrillation
6 genes
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2 of 6 corroborated by 2+ sources
PKP2(1), KCNJ2(1), CACNA1C(1), RYR2(2), SCN5A(3), TTN(1)
0.130 0.400 5.19e-13 6.44e-12 ✓ sig. Cluster 4 →
Cleft lip and palate Complete unilateral cleft lip
6 genes
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TP63(1), IRF6(1), BMP4(1), MSX1(1), CDH1(1), NECTIN1(1)
0.130 0.400 5.19e-13 6.44e-12 ✓ sig. Cluster 63 →
Uveomeningoencephalitic syndrome Vogt-koyanagi-harada disease
4 genes
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4 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(3), FAS(2), PTPN22(2)
0.364 0.571 5.23e-13 6.47e-12 ✓ sig. Cluster 1 →
Follicular thyroid cancer Nonmedullary thyroid cancer
4 genes
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4 of 4 corroborated by 2+ sources
NRAS(3), HRAS(3), SRGAP1(2), MINPP1(2)
0.364 0.571 5.23e-13 6.47e-12 ✓ sig. Cluster 18 →
Cryptophthalmos syndrome Cyclocephaly
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.364 0.571 5.23e-13 6.47e-12 ✓ sig. Cluster 48 →
Congenital neurologic anomalies Hereditary spastic paraplegia
13 genes
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2 of 13 corroborated by 2+ sources
ABCD1(1), RNASEH2B(2), ALDH18A1(1), AP4M1(1), AP4B1(1), AP4E1(1), POLG(1), CYP2U1(2), AMPD2(1), ATL1(1), GJC2(1), ERLIN2(1) +1 more
0.064 0.129 5.29e-13 6.55e-12 ✓ sig. —
Mitochondrial myopathy Progressive external ophthalmoplegia
5 genes
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5 of 5 corroborated by 2+ sources
RRM2B(4), IL1A(2), IL1B(2), SLC25A4(3), TK2(3)
0.208 0.385 5.34e-13 6.60e-12 ✓ sig. Cluster 32 →
Colitis Sepsis
7 genes
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7 of 7 corroborated by 2+ sources
IL10(2), IL1B(2), TNF(2), IL6(2), IFNG(2), NOS2(2), MIF(2)
0.115 0.212 5.43e-13 6.71e-12 ✓ sig. Cluster 114 →
Dental caries Squamous cell carcinoma
42 genes
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6 of 42 corroborated by 2+ sources
RTEL1(1), ABT1(1), EPHX2(1), GLIS3(1), GRIN2B(1), H4C8(1), HLA-DQA1(1), HLA-DRB5(1), MOG(1), MTMR3(1), PBX3(1), RARB(2) +30 more
0.043 0.182 5.45e-13 6.73e-12 ✓ sig. Cluster 20 →
Brain ischemia Glomerulonephritis
11 genes
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11 of 11 corroborated by 2+ sources
F2(2), IL1B(2), MTHFR(2), TNF(2), IL6(2), ALB(2), CCL2(2), IL1RN(2), IL18(2), CCL3(2), CCL4(2)
0.070 0.157 5.52e-13 6.81e-12 ✓ sig. —
Anorexia nervosa Irritable bowel syndrome
19 genes
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RERE(1), ABT1(1), DCC(1), ERBB4(1), MPHOSPH9(1), NALF1(1), PTPRF(1), SORCS3(1), TCF4(1), CRB1(1), RBMS1(1), FAF1(1) +7 more
0.052 0.142 5.75e-13 7.10e-12 ✓ sig. —
Congenital malformation syndromes predominantly affecting facial appearance Mobius syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.250 1.000 5.83e-13 7.18e-12 ✓ sig. Cluster 48 →
Mobius syndrome Warburg micro syndrome
4 genes
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4 of 4 corroborated by 2+ sources
RAB18(6), RAB3GAP1(5), RAB3GAP2(5), TBC1D20(5)
0.250 1.000 5.83e-13 7.18e-12 ✓ sig. Cluster 48 →
Cleft eyelid Coloboma
4 genes
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2 of 4 corroborated by 2+ sources
PAX6(4), FZD5(1), ABCB6(1), SALL2(2)
0.250 1.000 5.83e-13 7.18e-12 ✓ sig. Cluster 272 →
Cleft lip and cleft of alveolar process of maxilla Cleft lip and palate
4 genes
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TP63(1), IRF6(1), MSX1(1), NECTIN1(1)
0.250 1.000 5.83e-13 7.18e-12 ✓ sig. —
Ectodermal dysplasia Hypohidrotic ectodermal dysplasia
5 genes
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5 of 5 corroborated by 2+ sources
EDAR(6), WNT10A(4), EDARADD(7), KDF1(7), CSTB(3)
0.143 0.714 5.85e-13 7.20e-12 ✓ sig. Cluster 117 →
Aniridia Anterior segment dysgenesis
5 genes
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5 of 5 corroborated by 2+ sources
ELP4(5), FOXC1(5), FOXD3(2), PAX6(4), PITX2(5)
0.179 0.556 5.86e-13 7.20e-12 ✓ sig. —
Maturity-onset diabetes of the young (mody) Transient neonatal diabetes mellitus
5 genes
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5 of 5 corroborated by 2+ sources
HNF1B(2), INS(5), ABCC8(6), KCNJ11(7), GCK(6)
0.179 0.556 5.86e-13 7.20e-12 ✓ sig. Cluster 36 →
Aortic valve disease Thoracic aortic aneurysm and aortic dissection
9 genes
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7 of 9 corroborated by 2+ sources
FBN1(5), NOTCH1(4), COL5A1(1), TGFB2(5), COL1A1(2), COL3A1(2), LOX(6), ROBO4(5), GATA5(1)
0.079 0.220 5.97e-13 7.33e-12 ✓ sig. —
Ventricular dysfunction Ventricular remodeling
7 genes
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AGT(1), NFE2L2(1), AKT1(1), CTNNB1(1), NPPB(1), MYH6(1), SIRT6(1)
0.108 0.280 6.08e-13 7.46e-12 ✓ sig. —
Congenital ear anomaly Meniere disease
8 genes
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PCDH15(1), ADGRV1(1), MYO6(1), CDH23(1), MYO7A(1), TBCEL-TECTA(1), TECTA(1), C10orf105(1)
0.088 0.258 6.08e-13 7.46e-12 ✓ sig. Cluster 26 →
Colorectal neoplasms Endometrial neoplasms
20 genes
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4 of 20 corroborated by 2+ sources
ARID1A(1), ESR2(1), MSH6(1), SULT2B1(1), TET2(2), MTHFR(1), PPARG(2), AKT1(2), RNF43(1), CXCL8(1), GUCY1A2(2), TNFSF10(1) +8 more
0.050 0.152 6.12e-13 7.50e-12 ✓ sig. —
Brain ischemia Status epilepticus
10 genes
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10 of 10 corroborated by 2+ sources
CAT(2), BDNF(2), CASP3(2), TNF(2), PTGS2(2), CCL2(2), NOS2(2), IL1RN(2), JUN(2), CCL3(2)
0.076 0.143 6.18e-13 7.57e-12 ✓ sig. Cluster 114 →
Cleft lip Cleft lip and palate
6 genes
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2 of 6 corroborated by 2+ sources
TP63(2), IRF6(2), BMP4(1), MSX1(1), CDH1(1), NECTIN1(1)
0.128 0.400 6.19e-13 7.58e-12 ✓ sig. Cluster 63 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.