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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Conduction disorder of the heart Polymorphic catecholaminergic ventricular tachycardia
7 genes
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2 of 7 corroborated by 2+ sources
PKP2(1), CACNA1C(1), CASQ2(2), RYR2(2), SCN5A(1), TTN(1), ANK2(1)
0.212 0.467 5.43e-17 8.86e-16 ✓ sig. Cluster 4 →
Neonatal diabetes mellitus Transient neonatal diabetes mellitus
6 genes
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6 of 6 corroborated by 2+ sources
INS(2), GATA4(2), ABCC8(6), KCNJ11(5), GCK(2), SLC2A2(2)
0.286 0.667 5.61e-17 9.14e-16 ✓ sig. Cluster 36 →
Carcinoma Esophageal neoplasms
16 genes
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ACTB(1), TP53(1), EGFR(1), BCL2(1), ENO1(1), SOD2(1), PTGS2(1), CSF3(1), ABCB1(1), TGFBR2(1), PTGS1(1), MET(1) +4 more
0.071 0.216 5.68e-17 9.25e-16 ✓ sig. Cluster 5 →
Seizures Status epilepticus
15 genes
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15 of 15 corroborated by 2+ sources
CAT(2), SCN8A(5), BDNF(2), CRH(2), NOS1(2), NGF(2), FOS(2), PTGS2(2), NOS2(2), SLC8A1(2), CNR1(2), ABCC2(2) +3 more
0.076 0.214 5.86e-17 9.54e-16 ✓ sig. —
Chronic obstructive pulmonary disease Pulmonary fibrosis
12 genes
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12 of 12 corroborated by 2+ sources
SERPINA1(2), HMOX1(2), TNF(2), IL6(2), DSP(3), ELN(2), TGFB1(2), MMP9(2), CXCL8(2), CXCL2(2), FAM13A(2), SOD3(2)
0.087 0.286 6.25e-17 1.02e-15 ✓ sig. Cluster 119 →
Leopard syndrome noonan syndrome with multiple lentigines
5 genes
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5 of 5 corroborated by 2+ sources
BRAF(6), NRAS(2), RAF1(5), PTPN11(6), MAP2K1(2)
0.417 1.000 6.41e-17 1.04e-15 ✓ sig. Cluster 42 →
Congenital short qt syndrome Short qt syndrome
5 genes
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5 of 5 corroborated by 2+ sources
KCNJ2(6), KCNH2(6), KCNQ1(7), CACNA2D1(3), SLC4A3(6)
0.417 1.000 6.41e-17 1.04e-15 ✓ sig. —
Giant cell arteritis Lupus nephritis
8 genes
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4 of 8 corroborated by 2+ sources
HLA-DRB1(2), MBL2(1), IFNG(2), FCGR2A(1), MMP9(2), CCL2(1), FCGR3A(1), MMP2(2)
0.151 0.444 6.47e-17 1.05e-15 ✓ sig. Cluster 1 →
Barrett esophagus Esophageal disease
10 genes
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CRTC1(1), MVB12B(1), PBX3(1), SLC39A8(1), ATXN2(1), RPGRIP1L(1), NT5C2(1), HMCN2(1), AKTIP(1), KLHL26(1)
0.108 0.333 7.27e-17 1.18e-15 ✓ sig. —
Anophthalmia/microphthalmia-esophageal atresia syndrome Colobomatous microphthalmia
7 genes
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7 of 7 corroborated by 2+ sources
SOX2(3), STRA6(2), SIX6(3), OTX2(3), PORCN(2), RAX(3), VSX2(2)
0.206 0.467 7.54e-17 1.22e-15 ✓ sig. Cluster 56 →
Differentiated thyroid carcinoma Thyroid carcinoma
7 genes
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1 of 7 corroborated by 2+ sources
TRMO(1), NRG1(1), VAV3(1), SEPTIN11(1), NDUFA13(2), PCNX2(1), SOWAHB(1)
0.135 0.778 7.57e-17 1.22e-15 ✓ sig. Cluster 130 →
Congenital cataract Posterior polar cataract
7 genes
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7 of 7 corroborated by 2+ sources
PITX3(4), EPHA2(2), CHMP4B(4), CRYAB(3), MIP(2), CRYBA1(4), GJA3(3)
0.113 0.875 7.57e-17 1.22e-15 ✓ sig. Cluster 43 →
Liver neoplasms Non-small-cell lung carcinoma
19 genes
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TP53(1), GRIK2(1), MACIR(1), NFE2L2(1), STAT3(1), PHGDH(1), XPC(1), FHIT(1), TRMT11(1), CSF3(1), KRAS(1), APC(1) +7 more
0.070 0.139 8.11e-17 1.31e-15 ✓ sig. Cluster 5 →
Atherosclerosis Vascular disease
13 genes
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7 of 13 corroborated by 2+ sources
AGT(2), HDAC9(3), TCF7L2(1), MTHFR(2), SOD2(2), TNF(2), ATXN2(1), CHRNA3(1), TWIST1(1), LPA(2), AHR(2), CHRNA5(1) +1 more
0.082 0.250 8.83e-17 1.43e-15 ✓ sig. Cluster 307 →
Cholelithiasis Hepatomegaly
14 genes
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14 of 14 corroborated by 2+ sources
CYP1A2(2), NOS3(2), NFE2L2(2), RELA(2), ALB(2), TGFB1(2), KEAP1(2), NOS2(2), ABCC3(2), NR1H4(4), MAPK14(2), CYGB(2) +2 more
0.076 0.241 8.85e-17 1.43e-15 ✓ sig. —
Nasal disorder Seasonal allergic rhinitis
10 genes
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EMSY(1), SMAD3(1), CLEC16A(1), IL18R1(1), IL7R(1), IKZF3(1), IL1RL1(1), RANBP6(1), SPEF2(1), WDR36(1)
0.088 0.435 8.98e-17 1.45e-15 ✓ sig. Cluster 137 →
Esophageal neoplasms Lymphatic metastasis
10 genes
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GRIK2(1), MACIR(1), SOD2(1), TRMT11(1), MET(1), ERBB2(1), AQP3(1), CDKN2A(1), CCNH(1), SFN(1)
0.105 0.333 9.72e-17 1.57e-15 ✓ sig. Cluster 5 →
Non-small-cell lung carcinoma Ovarian neoplasms
18 genes
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TP53(1), GRIK2(1), MACIR(1), SOD2(1), STAT3(1), AREG(1), TRMT11(1), KRAS(1), CXCL8(1), MET(1), MYC(1), BIRC5(1) +6 more
0.072 0.137 9.89e-17 1.59e-15 ✓ sig. Cluster 5 →
Gonadal dysgenesis Perrault syndrome
7 genes
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7 of 7 corroborated by 2+ sources
CLPP(7), LARS2(6), TWNK(5), HSD17B4(7), ERAL1(5), HARS2(6), SGO2(2)
0.194 0.500 9.91e-17 1.59e-15 ✓ sig. —
Small vessel stroke Stroke
17 genes
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3 of 17 corroborated by 2+ sources
CASZ1(2), PRDM16(1), SH2B3(2), NBEAL1(1), WDR12(1), ATXN2(1), KNG1(1), COL4A2(1), GALNT18(1), SH3PXD2A(2), STN1(1), JPH3(1) +5 more
0.048 0.340 1.02e-16 1.64e-15 ✓ sig. —
Pulmonary alveolar proteinosis Pulmonary surfactant metabolism dysfunction
5 genes
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5 of 5 corroborated by 2+ sources
CSF2RB(6), SFTPC(5), SFTPB(5), ABCA3(3), CSF2RA(6)
0.455 0.833 1.05e-16 1.68e-15 ✓ sig. Cluster 1 →
Congenital cystic eyeball Microphthalmos
6 genes
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1 of 6 corroborated by 2+ sources
PRSS56(2), RAX(1), VSX2(1), ALDH1A3(1), GDF6(1), GDF3(1)
0.162 1.000 1.05e-16 1.69e-15 ✓ sig. Cluster 56 →
Dejerine-sottas disease Distal hereditary motor neuropathy
9 genes
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7 of 9 corroborated by 2+ sources
TRPV4(3), DYNC1H1(2), FIG4(1), NEFL(1), HSPB1(6), PLEKHG5(3), GARS1(6), MPZ(3), HSPB8(6)
0.136 0.250 1.10e-16 1.76e-15 ✓ sig. Cluster 15 →
Xeroderma pigmentosum Xeroderma pigmentosum-cockayne syndrome
5 genes
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4 of 5 corroborated by 2+ sources
ERCC2(7), ERCC4(7), BIVM-ERCC5(1), ERCC5(7), ERCC3(7)
0.385 1.000 1.10e-16 1.76e-15 ✓ sig. Cluster 86 →
Cardiofaciocutaneous syndrome noonan syndrome with multiple lentigines
5 genes
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5 of 5 corroborated by 2+ sources
BRAF(7), NRAS(2), RAF1(2), PTPN11(3), MAP2K1(7)
0.385 1.000 1.10e-16 1.76e-15 ✓ sig. Cluster 42 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.