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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Megaloblastic anemia Vitamin b12 deficiency
6 genes
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3 of 6 corroborated by 2+ sources
FUT2(1), TCN2(3), CUBN(2), TCN1(2), MMAA(1), OOSP3(1)
0.333 0.545 2.30e-17 3.83e-16 ✓ sig. Cluster 106 →
Atrophic macular degeneration Macular and posterior pole degeneration
8 genes
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CFI(1), C3(1), CETP(1), CFH(1), RDH5(1), ARMS2(1), C9(1), SKIC2(1)
0.129 0.615 2.30e-17 3.83e-16 ✓ sig. Cluster 187 →
Anorexia nervosa Psychiatric disorders
28 genes
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1 of 28 corroborated by 2+ sources
DCC(1), ERBB4(1), NALF1(1), PTPRF(1), RIMS1(1), SORCS3(1), TCF4(1), THSD7A(1), TMEM106B(1), ZZEF1(1), DRD2(1), ANKS1B(1) +16 more
0.063 0.128 2.31e-17 3.83e-16 ✓ sig. Cluster 69 →
Cerebellar atrophy Dysarthria
8 genes
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CACNA1A(1), PNPLA6(1), HARS1(1), DNMT1(1), SMC1A(1), TBC1D24(1), BIVM-ERCC5(1), ERCC5(1)
0.178 0.364 2.35e-17 3.90e-16 ✓ sig. Cluster 239 →
Cleft lip and palate Orofacial cleft
10 genes
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8 of 10 corroborated by 2+ sources
TP63(4), IRF6(4), BMP4(5), MSX1(4), CDH1(2), AMOTL1(3), DLG1(1), ARHGAP29(3), NECTIN1(1), DLX4(5)
0.062 0.667 2.45e-17 4.06e-16 ✓ sig. Cluster 63 →
Panhypopituitarism Pituitary hormone deficiency
7 genes
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5 of 7 corroborated by 2+ sources
HESX1(1), OTX2(3), LHX3(2), LHX4(3), POU1F1(4), PROP1(5), ACBD6(1)
0.152 0.778 2.84e-17 4.71e-16 ✓ sig. —
Hypotension Seizures
15 genes
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INS(1), CAT(1), ADRA1B(1), AGT(1), CRH(1), IL1B(1), IL6(1), PDYN(1), POMC(1), ADORA2A(1), DRD1(1), DRD2(1) +3 more
0.077 0.224 2.88e-17 4.76e-16 ✓ sig. Cluster 13 →
Arrhythmogenic right ventricular dysplasia Conduction disorder of the heart
7 genes
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DSG2(1), JUP(1), PKP2(1), DSP(1), RYR2(1), SCN5A(1), MYH7(1)
0.219 0.500 2.90e-17 4.80e-16 ✓ sig. Cluster 4 →
Congenital neurologic anomalies Lissencephaly
13 genes
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2 of 13 corroborated by 2+ sources
FOXG1(1), DYNC1H1(1), CASK(1), TMEM216(1), ASPM(1), POMT1(1), POMGNT1(1), TSPAN1(1), AMPD2(1), ACTG1(1), TUBA1A(5), DCX(6) +1 more
0.085 0.260 3.16e-17 5.21e-16 ✓ sig. —
complex neurodevelopmental disorder Developmental disability
18 genes
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18 of 18 corroborated by 2+ sources
CHD8(2), GRIN2B(2), KCNQ2(3), NBEA(2), SCN8A(2), TLK2(2), GNAI1(2), SETBP1(2), ZMIZ1(2), NR4A2(2), RFX3(2), SCN2A(2) +6 more
0.074 0.153 3.16e-17 5.21e-16 ✓ sig. Cluster 6 →
monogenic diabetes Permanent neonatal diabetes mellitus
6 genes
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6 of 6 corroborated by 2+ sources
INS(6), ABCC8(6), KCNJ11(6), GCK(7), PDX1(5), NEUROD1(2)
0.316 0.600 3.40e-17 5.62e-16 ✓ sig. Cluster 36 →
Carbohydrate metabolism disease Carbohydrate metabolism disorder
5 genes
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1 of 5 corroborated by 2+ sources
TPI1(1), ACAT1(1), MPI(1), PRKAG3(2), TALDO1(1)
0.455 1.000 3.50e-17 5.77e-16 ✓ sig. Cluster 354 →
Congenital ichthyosiform erythroderma Ichthyosis
6 genes
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6 of 6 corroborated by 2+ sources
TGM1(2), ABCA12(2), ALOX12B(2), ALOXE3(2), PNPLA1(2), CERS3(2)
0.300 0.667 3.63e-17 5.98e-16 ✓ sig. Cluster 233 →
Major depressive disorder Oligodendroglioma
143 genes
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26 of 143 corroborated by 2+ sources
SOX5(1), WWOX(1), ALCAM(1), ANK3(1), C6orf118(1), CAMK1D(1), CDH13(2), CHRM3(1), CNTNAP2(2), DCC(1), DCHS2(1), DGKB(2) +131 more
0.060 0.256 3.73e-17 6.14e-16 ✓ sig. Cluster 2 →
Obsessive-compulsive disorder Psychiatric disorders
27 genes
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2 of 27 corroborated by 2+ sources
RAI1(2), C6orf118(1), CAMTA1(1), DCC(1), KLC1(1), LSAMP(1), PTPRF(1), RIMS1(1), SORCS3(1), TCF4(1), DRD2(1), ANKS1B(1) +15 more
0.063 0.123 3.75e-17 6.17e-16 ✓ sig. Cluster 69 →
Hyperalgesia Pulmonary fibrosis
15 genes
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15 of 15 corroborated by 2+ sources
AGT(2), IGF1(2), IL1A(2), IL1B(2), TNF(2), IL6(2), HMGB1(2), PTGS2(2), MECP2(2), CXCL8(2), CCL2(2), IL1RN(2) +3 more
0.082 0.169 3.85e-17 6.33e-16 ✓ sig. —
Polycythemia Secondary polycythemia
6 genes
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6 of 6 corroborated by 2+ sources
HBA1(3), EPO(4), HBB(3), EPAS1(3), VHL(2), EGLN1(3)
0.273 0.750 4.10e-17 6.74e-16 ✓ sig. Cluster 105 →
Costello syndrome Leopard syndrome
6 genes
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6 of 6 corroborated by 2+ sources
BRAF(6), NRAS(3), RAF1(5), PTPN11(6), MAP2K1(3), MAP2K2(2)
0.316 0.545 4.28e-17 7.02e-16 ✓ sig. Cluster 42 →
non-syndromic X-linked intellectual disability X-linked intellectual disability
7 genes
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7 of 7 corroborated by 2+ sources
GDI1(4), HUWE1(2), ACSL4(3), DLG3(4), SYP(4), AFF2(2), TSPAN7(3)
0.093 1.000 4.43e-17 7.26e-16 ✓ sig. —
Cannabis abuse Post-traumatic stress disorder
20 genes
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1 of 20 corroborated by 2+ sources
ABT1(1), CTTNBP2(1), FOXP1(1), FOXP2(1), HMGN4(1), PDE4B(1), SEMA3F(1), SLC39A8(1), ZBTB20(1), ZNF184(1), ZNF804A(1), BDNF(2) +8 more
0.067 0.172 4.55e-17 7.46e-16 ✓ sig. Cluster 2 →
Benign myoclonic epilepsy Familial adult myoclonic epilepsy
5 genes
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5 of 5 corroborated by 2+ sources
ADRA2B(2), CNTN2(3), MARCHF6(4), SAMD12(4), YEATS2(4)
0.500 0.833 4.66e-17 7.63e-16 ✓ sig. Cluster 357 →
Brain ischemia Cholelithiasis
15 genes
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15 of 15 corroborated by 2+ sources
CAT(2), MPO(2), ICAM1(2), IGF1(2), IL1B(2), TNF(2), IL6(2), RELA(2), EGR1(2), MAPK1(2), ALB(2), MMP9(2) +3 more
0.077 0.214 4.71e-17 7.71e-16 ✓ sig. —
Glioma Major depressive disorder
178 genes
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55 of 178 corroborated by 2+ sources
PAFAH1B1(1), CAT(3), TERT(3), DOCK6(1), AKAP6(1), ANK3(1), ANO4(1), BRAF(2), C6orf118(1), CACNA2D3(1), CARD11(1), CDH19(1) +166 more
0.070 0.235 4.95e-17 8.10e-16 ✓ sig. —
Polymorphic catecholaminergic ventricular tachycardia Wolff-parkinson-white syndrome
8 genes
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2 of 8 corroborated by 2+ sources
KCNJ2(1), CACNA1C(1), CASQ2(2), RYR2(2), SCN5A(1), MYBPC3(1), TTN(1), ANK2(1)
0.136 0.533 5.15e-17 8.41e-16 ✓ sig. Cluster 4 →
Hereditary chronic pancreatitis Pancreatitis
7 genes
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7 of 7 corroborated by 2+ sources
CFTR(4), CPA1(3), CTRC(4), PRSS1(6), PRSS2(3), TRPV6(3), SPINK1(5)
0.119 0.875 5.19e-17 8.47e-16 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.