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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Coronary artery disease Gout
156 genes
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24 of 156 corroborated by 2+ sources
SKI(1), JMJD1C(1), COL4A4(1), ABCA1(2), ADGRL2(1), ADH5(1), ALDH1A2(1), ANKRD55(1), APH1B(2), APOC1(1), BAZ1B(1), BCAS3(1) +144 more
0.086 0.190 3.23e-29 9.59e-28 ✓ sig. —
Coloboma Congenital ocular coloboma
11 genes
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9 of 11 corroborated by 2+ sources
ACTB(2), ELP4(1), PAX6(4), RAX(2), ALDH7A1(2), LAMB1(2), MYH10(2), ACTG1(2), FZD5(1), SALL2(2), SLBP(2)
0.355 0.733 3.65e-29 1.08e-27 ✓ sig. Cluster 272 →
complex neurodevelopmental disorder Nonsyndromic intellectual disability
26 genes
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26 of 26 corroborated by 2+ sources
EPB41L1(3), GRIA1(3), GRIK2(4), GRIN2B(3), KCNQ2(3), NBEA(3), PRICKLE2(3), SCN8A(3), ST3GAL3(3), ZNF292(2), CIC(3), RSRC1(4) +14 more
0.111 0.220 4.25e-29 1.26e-27 ✓ sig. Cluster 6 →
Leber hereditary optic neuropathy Rod-cone dystrophy
13 genes
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9 of 13 corroborated by 2+ sources
LRAT(2), ND1(2), ND2(2), RPE65(2), ATP6(2), COX3(2), ATP8(1), COX1(1), ND5(2), COX2(1), ND3(1), ND4(2) +1 more
0.265 0.464 4.82e-29 1.43e-27 ✓ sig. Cluster 32 →
Arrhythmogenic right ventricular cardiomyopathy Arrhythmogenic right ventricular dysplasia
12 genes
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12 of 12 corroborated by 2+ sources
CTNNA3(7), DSG2(6), JUP(5), PKP2(7), DSP(4), RYR2(3), SCN5A(3), DSC2(6), LDB3(2), MYH7(3), TGFB3(7), TMEM43(6)
0.218 0.857 5.06e-29 1.49e-27 ✓ sig. Cluster 4 →
Neuropathy, ataxia, and retinitis pigmentosa Rod-cone dystrophy
11 genes
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1 of 11 corroborated by 2+ sources
ND1(1), ND2(1), ATP6(2), COX3(1), ATP8(1), COX1(1), ND5(1), COX2(1), ND3(1), ND4(1), ND4L(1)
0.306 0.846 5.23e-29 1.54e-27 ✓ sig. Cluster 32 →
Cardiac arrest Ventricular fibrillation
13 genes
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4 of 13 corroborated by 2+ sources
INS(2), CACNB2(1), DSG2(1), TRPM4(1), DSP(1), DPP6(3), MYH6(1), RYR2(1), SCN5A(3), CACNA2D1(1), PDZRN4(1), AKAP9(1) +1 more
0.260 0.500 5.40e-29 1.59e-27 ✓ sig. Cluster 4 →
Melas syndrome Neuropathy, ataxia, and retinitis pigmentosa
10 genes
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6 of 10 corroborated by 2+ sources
ND1(2), ND2(1), ATP6(2), COX3(2), ATP8(1), COX1(2), ND5(2), COX2(2), ND3(1), ND4(1)
0.455 0.769 6.07e-29 1.78e-27 ✓ sig. Cluster 32 →
Ehlers-danlos syndrome Marfan syndrome
15 genes
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15 of 15 corroborated by 2+ sources
FBN1(7), NOTCH1(2), COL5A1(8), FBN2(2), SLC2A10(2), TGFB2(2), FLNA(2), SMAD3(2), COL1A1(7), COL3A1(7), MYH11(2), TGFBR1(3) +3 more
0.205 0.349 6.73e-29 1.98e-27 ✓ sig. Cluster 12 →
Atopic dermatitis Rhinitis
18 genes
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9 of 18 corroborated by 2+ sources
CCL24(2), EMSY(3), MS4A2(1), BDNF(1), IL10(2), IL1B(2), IL2(1), IL4(2), MBL2(1), TLR4(1), TNF(1), IFNG(2) +6 more
0.158 0.277 8.10e-29 2.38e-27 ✓ sig. Cluster 16 →
Celiac disease Polyarticular juvenile idiopathic arthritis
19 genes
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8 of 19 corroborated by 2+ sources
RUNX1(1), ANKRD55(2), UBE2L3(1), IL2(1), RUNX3(3), ATXN2(1), HLA-DQB1(4), IRF1(1), IL21(3), IL2RA(3), LTBR(1), PHTF1(1) +7 more
0.092 0.594 8.93e-29 2.61e-27 ✓ sig. —
Ear, patella, short stature syndrome Meier-gorlin syndrome
9 genes
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8 of 9 corroborated by 2+ sources
CDC45(7), CDC6(7), CDT1(7), GMNN(7), ORC1(6), DONSON(1), GINS3(2), ORC4(7), ORC6(7)
0.600 0.818 9.04e-29 2.64e-27 ✓ sig. Cluster 171 →
Vitamin b deficiency Vitamin b12 deficiency
9 genes
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1 of 9 corroborated by 2+ sources
FUT2(2), TCN2(1), CUBN(1), TCN1(1), CD320(1), FUT6(1), MMAA(1), MMUT(1), OOSP3(1)
0.600 0.818 9.04e-29 2.64e-27 ✓ sig. Cluster 106 →
Left ventricular noncompaction cardiomyopathy Wolff-parkinson-white syndrome
15 genes
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PRDM16(1), ACTN2(1), JUP(1), RBM20(1), DSP(1), MYH6(1), RYR2(1), SCN5A(1), MYBPC3(1), MYH7(1), TTN(1), ACTC1(1) +3 more
0.200 0.395 9.52e-29 2.78e-27 ✓ sig. Cluster 4 →
Myasthenic syndrome Postsynaptic congenital myasthenic syndrome
11 genes
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11 of 11 corroborated by 2+ sources
SCN4A(4), AGRN(5), CHRNE(5), RAPSN(5), CHRND(5), CHRNA1(7), MUSK(5), CHRNB1(5), LRP4(5), COL13A1(5), DOK7(3)
0.262 0.917 9.62e-29 2.80e-27 ✓ sig. Cluster 34 →
Accessory skin tag Benign pemphigus
8 genes
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ALDH18A1(1), ATP6V0A2(1), ELN(1), EFEMP2(1), FBLN5(1), ATP6V1A(1), ATP6V1E1(1), PYCR1(1)
0.800 1.000 1.15e-28 3.34e-27 ✓ sig. Cluster 80 →
Accessory skin tag Darier disease
8 genes
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ALDH18A1(1), ATP6V0A2(1), ELN(1), EFEMP2(1), FBLN5(1), ATP6V1A(1), ATP6V1E1(1), PYCR1(1)
0.800 1.000 1.15e-28 3.34e-27 ✓ sig. Cluster 80 →
Arrhythmogenic right ventricular cardiomyopathy Left ventricular disease
17 genes
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13 of 17 corroborated by 2+ sources
ABCC9(1), JUP(5), PKP2(8), PRKAG2(1), DSP(4), MYH6(1), LMNA(3), RYR2(3), DSC2(5), LDB3(3), MYBPC3(8), MYH7(5) +5 more
0.167 0.327 1.16e-28 3.36e-27 ✓ sig. Cluster 4 →
Gastroesophageal reflux disease Peptic ulcer disease
32 genes
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DPYD(1), BCL3(1), BLOC1S3(1), CCKBR(1), CDH4(1), CNTNAP2(1), CR1L(1), FOXP1(1), H3C12(1), HLA-DQB3(1), HLA-DRA(1), HYAL2(1) +20 more
0.087 0.264 1.36e-28 3.94e-27 ✓ sig. —
Colorectal neoplasms Pancreatic neoplasms
32 genes
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5 of 32 corroborated by 2+ sources
DPYD(1), TP53(1), TP63(2), EGFR(1), EPCAM(1), MSH2(2), MSH6(2), PPARG(1), SOD2(1), TNF(1), EFEMP1(1), PTGS2(1) +20 more
0.085 0.274 1.62e-28 4.69e-27 ✓ sig. Cluster 5 →
Peripheral neuropathy Peroneal muscle atrophy
20 genes
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2 of 20 corroborated by 2+ sources
DHTKD1(1), AARS1(1), SLC12A6(1), MME(1), DYNC1H1(1), MFN2(1), NEFL(2), COX6A1(1), DYSF(1), SH3TC2(1), PLEKHG5(1), AIFM1(1) +8 more
0.094 0.513 1.69e-28 4.87e-27 ✓ sig. —
Cleft palate and bilateral cleft lip Melas syndrome
10 genes
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5 of 10 corroborated by 2+ sources
ND1(2), ND2(1), ATP6(1), COX3(2), ATP8(1), COX1(2), ND5(2), COX2(2), ND3(1), ND4(1)
0.435 0.714 2.12e-28 6.12e-27 ✓ sig. Cluster 32 →
familial thoracic aortic aneurysm and aortic dissection Marfan syndrome
11 genes
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11 of 11 corroborated by 2+ sources
FBN1(7), PRKG1(2), TGFB2(3), FLNA(2), BGN(2), MYH11(3), LOX(2), MYLK(3), MFAP5(2), TGFB3(2), MAT2A(2)
0.244 0.917 2.39e-28 6.89e-27 ✓ sig. Cluster 12 →
Cleft palate and bilateral cleft lip Rod-cone dystrophy
11 genes
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ND1(1), ND2(1), ATP6(1), COX3(1), ATP8(1), COX1(1), ND5(1), COX2(1), ND3(1), ND4(1), ND4L(1)
0.297 0.786 2.44e-28 7.00e-27 ✓ sig. Cluster 32 →
Pulmonary arterial hypertension Pulmonary hypertension
16 genes
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16 of 16 corroborated by 2+ sources
TBX4(3), BMPR1B(2), CBLN2(2), EIF2AK4(3), CAV1(7), SMAD4(2), SMAD9(8), ENG(2), KCNA5(2), BMPR2(8), GDF2(5), KCNK3(6) +4 more
0.176 0.356 2.56e-28 7.34e-27 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.