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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Focal glomerulosclerosis Genetic steroid-resistant nephrotic syndrome
17 genes
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WT1(1), ACTN4(1), ARHGAP24(1), CD2AP(1), MYO1E(1), PAX2(1), PTPRO(1), TRPC6(1), PLCE1(1), ANLN(1), CRB2(1), INF2(1) +5 more
0.227 0.500 7.29e-34 2.53e-32 ✓ sig. Cluster 30 →
Brugada syndrome Wolff-parkinson-white syndrome
19 genes
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10 of 19 corroborated by 2+ sources
ABCC9(4), COL5A1(1), TBX5(2), TRPM4(4), DSP(1), KCNJ2(1), CACNA1C(7), TBX20(2), KCNH2(3), KCNQ1(1), RYR2(1), SCN5A(8) +7 more
0.198 0.373 9.19e-34 3.18e-32 ✓ sig. Cluster 4 →
Partington syndrome X-linked intellectual disability
14 genes
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14 of 14 corroborated by 2+ sources
CASK(5), ARX(7), ZC4H2(3), AP1S2(2), RPL10(4), BRWD3(3), LAS1L(3), KDM5C(3), NONO(2), DDX3X(4), RAB40AL(3), PAK3(3) +2 more
0.187 1.000 9.49e-34 3.28e-32 ✓ sig. —
Congenital muscular dystrophy Muscular dystrophy
15 genes
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9 of 15 corroborated by 2+ sources
GMPPB(3), RIF1(1), LARGE1(2), CRPPA(3), LMNA(4), DYSF(1), NEB(1), LAMA2(1), POMT1(3), POMT2(3), POMGNT1(3), CAPN3(1) +3 more
0.254 0.682 1.09e-33 3.75e-32 ✓ sig. Cluster 14 →
Cutaneous squamous cell carcinoma Non-small cell lung carcinoma
20 genes
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1 of 20 corroborated by 2+ sources
TP63(1), BNC2(1), FOXP1(1), HLA-DQA1(1), TRPS1(1), OCA2(1), RALY(1), IRF4(1), KRT5(1), BACH2(1), MICA(1), LPP(1) +8 more
0.149 0.526 1.54e-33 5.30e-32 ✓ sig. Cluster 29 →
Hyperlipidemia Myocardial ischemia
42 genes
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28 of 42 corroborated by 2+ sources
ABCA1(2), ABCG8(2), APOB(3), APOC1(1), APOE(3), LDLR(3), LIPC(6), MLXIPL(2), NYAP2(1), SCARB1(1), SMARCA4(1), TCF7L2(3) +30 more
0.086 0.298 1.67e-33 5.74e-32 ✓ sig. —
Congenital heart defects Congenital heart disease
26 genes
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24 of 26 corroborated by 2+ sources
TBX1(2), UFD1(2), GATA4(1), CDK13(5), FOXP1(2), TGFB2(2), VEGFA(4), RCAN1(2), POU5F1(2), NPPB(2), PITX2(2), AHR(3) +14 more
0.120 0.371 1.85e-33 6.34e-32 ✓ sig. Cluster 111 →
Hepatocellular carcinoma Prostatic neoplasms
102 genes
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21 of 102 corroborated by 2+ sources
CYP17A1(1), HNF1B(2), COMT(1), MAP3K1(2), PTEN(1), TERT(2), TP53(4), ACE(1), ARID1A(1), BAD(2), BRAF(1), CDH13(1) +90 more
0.087 0.163 2.72e-33 9.32e-32 ✓ sig. —
Eczema Seasonal allergic rhinitis
36 genes
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RERE(1), CEBPA(1), BLTP1(1), CCR7(1), EMSY(1), ERBB3(1), HLA-DQA1(1), IQGAP1(1), ITGB8(1), RORA(1), SLC7A10(1), IL2(1) +24 more
0.084 0.360 2.79e-33 9.55e-32 ✓ sig. —
Prostatic neoplasms Stomach neoplasms
70 genes
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1 of 70 corroborated by 2+ sources
HNF1B(1), CHEK2(1), TP53(1), ACE(1), ARID1A(1), BNIP3(1), CST1(1), EGFR(1), ERCC2(1), KMT2C(1), SERPINE1(1), ZBTB20(1) +58 more
0.081 0.229 2.83e-33 9.67e-32 ✓ sig. Cluster 5 →
Focal glomerulosclerosis Idiopathic steroid-resistant nephrotic syndrome
16 genes
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12 of 16 corroborated by 2+ sources
WT1(2), ACTN4(2), ARHGAP24(2), CD2AP(2), MYO1E(2), PAX2(2), PTPRO(1), TRPC6(2), PLCE1(1), ANLN(1), CRB2(2), INF2(1) +4 more
0.229 0.571 3.61e-33 1.23e-31 ✓ sig. Cluster 30 →
Asthma Obstructive pulmonary disease
125 genes
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19 of 125 corroborated by 2+ sources
RERE(1), CDH2(1), AFF3(1), APOE(1), ARHGEF28(1), BNC2(1), C6orf118(1), CCDC91(1), COL6A3(1), CSMD1(1), EMSY(1), ERBB3(1) +113 more
0.083 0.224 4.22e-33 1.44e-31 ✓ sig. Cluster 252 →
Bone disease Metabolic bone disorder
14 genes
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14 of 14 corroborated by 2+ sources
ANKRD11(2), DHCR7(2), ALPL(2), ESR1(2), IGF1(2), KCNMA1(2), LRP2(2), MMP2(2), SLC20A1(2), GC(2), CYP27A1(2), CYP2R1(2) +2 more
0.169 1.000 4.58e-33 1.55e-31 ✓ sig. Cluster 299 →
Cardiofaciocutaneous syndrome Noonan syndrome
12 genes
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11 of 12 corroborated by 2+ sources
BRAF(7), KRAS(8), NRAS(7), SHOC2(7), RAF1(7), PTPN11(7), SOS1(7), MAP2K1(8), HRAS(3), MAP2K2(8), RIT1(6), SNAPC5(1)
0.316 1.000 5.02e-33 1.70e-31 ✓ sig. Cluster 42 →
Respiratory system disease Sclerosing cholangitis
42 genes
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DOCK3(1), EMSY(1), ETS1(1), HLA-DQA1(1), HLA-DRB1(1), IKZF1(1), IL6R(1), JAZF1(1), PLCL1(1), PTCD2(1), TSPAN14(1), TTC33(1) +30 more
0.098 0.183 6.49e-33 2.20e-31 ✓ sig. —
Congenital central hypoventilation syndrome Haddad syndrome
9 genes
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7 of 9 corroborated by 2+ sources
RET(2), BDNF(2), GDNF(3), PAH(1), EDN3(3), LBX1(2), MYO1H(3), ASCL1(1), PHOX2B(4)
0.900 1.000 7.47e-33 2.51e-31 ✓ sig. Cluster 387 →
Epilepsy of infancy with migrating focal seizures Malignant migrating partial seizures of infancy
9 genes
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9 of 9 corroborated by 2+ sources
KCNQ2(3), SCN1A(3), SCN2A(2), SLC12A5(3), TBC1D24(2), KCNT1(2), PLCB1(3), PIGA(3), SLC25A22(3)
0.900 1.000 7.47e-33 2.51e-31 ✓ sig. —
Dystonia musculorum deformans Genetic torsion dystonia
9 genes
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2 of 9 corroborated by 2+ sources
COL6A3(1), GCH1(1), THAP1(1), TOR1A(2), TUBB4A(1), TAF1(1), GNAL(1), HPCA(2), SGCE(1)
0.900 1.000 7.47e-33 2.51e-31 ✓ sig. Cluster 167 →
Crigler-najjar syndrome Lucey-driscoll syndrome
9 genes
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1 of 9 corroborated by 2+ sources
UGT1A10(1), UGT1A8(1), UGT1A9(1), UGT1A1(6), UGT1A6(1), UGT1A3(1), UGT1A4(1), UGT1A5(1), UGT1A7(1)
0.900 1.000 7.47e-33 2.51e-31 ✓ sig. Cluster 260 →
Conduction disorder of the heart Wolff-parkinson-white syndrome
15 genes
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JUP(1), RBM20(1), TRPM4(1), DSP(1), CACNA1C(1), MYH6(1), CASQ2(1), FLNC(1), KCNH2(1), KCNQ1(1), RYR2(1), SCN5A(1) +3 more
0.246 0.625 8.30e-33 2.79e-31 ✓ sig. Cluster 4 →
Deficiency anemia Vitamin b12 deficiency
11 genes
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FUT2(1), TCN2(1), CUBN(1), TCN1(1), LRRC43(1), CD320(1), FUT6(1), MMAA(1), FUT3(1), MMUT(1), OOSP3(1)
0.440 1.000 8.67e-33 2.90e-31 ✓ sig. Cluster 106 →
Diabetes mellitus type 2 Osteoarthritis
282 genes
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54 of 282 corroborated by 2+ sources
SOX5(1), HMGA2(1), NF1(1), KANSL1(1), CYP11B2(2), MASP1(1), COL2A1(2), FGFR3(1), LTBP3(3), PIK3R1(3), ADK(1), BRWD1(1) +270 more
0.080 0.386 8.67e-33 2.90e-31 ✓ sig. Cluster 2 →
Autoimmune thyroid disease Graves disease
27 genes
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14 of 27 corroborated by 2+ sources
IFIH1(3), BTNL2(2), FAM76B(1), HLA-DQA1(2), HLA-DRB1(2), ICOS(1), PRICKLE1(1), PRSS36(1), RHOH(1), IL10(2), HLA-DQB1(2), BACH2(1) +15 more
0.124 0.273 1.02e-32 3.41e-31 ✓ sig. Cluster 39 →
Hyperglycemia Hyperinsulinism
17 genes
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16 of 17 corroborated by 2+ sources
INS(2), FBN1(2), NOS3(2), GCG(2), INSR(5), LEP(2), IL6(2), GPX1(2), CCL2(2), CD40(2), FCGR3B(1), COL3A1(2) +5 more
0.218 0.405 1.24e-32 4.12e-31 ✓ sig. Cluster 36 →
Post-traumatic stress disorder Substance abuse
53 genes
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4 of 53 corroborated by 2+ sources
SOX5(1), BPTF(1), ADCY8(2), AFF3(1), ARHGAP15(1), CNTNAP5(1), CTTNBP2(1), DCC(1), EFNA5(1), FOXP1(1), FOXP2(1), GRIA1(2) +41 more
0.079 0.261 1.35e-32 4.51e-31 ✓ sig. Cluster 2 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.