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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Distal spinal muscular atrophy Hypertrophic neuropathy
12 genes
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2 of 12 corroborated by 2+ sources
AARS1(1), TRPV4(1), DYNC1H1(1), NEFL(1), SH3TC2(1), HSPB1(1), PLEKHG5(1), GARS1(1), HSPB8(1), MARS1(1), PMP22(2), PRX(2)
0.207 0.387 1.00e-24 2.42e-23 ✓ sig. Cluster 15 →
Distal spinal muscular atrophy Roussy-levy syndrome
12 genes
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1 of 12 corroborated by 2+ sources
AARS1(1), TRPV4(1), DYNC1H1(1), NEFL(1), SH3TC2(1), HSPB1(1), PLEKHG5(1), GARS1(1), HSPB8(1), MARS1(1), PMP22(4), PRX(1)
0.207 0.387 1.00e-24 2.42e-23 ✓ sig. Cluster 15 →
Diffuse gastric adenocarcinoma Gastric cancer
14 genes
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CDH13(1), CHLSN(1), LAT(1), ABO(1), PSCA(1), HTT(1), TJP3(1), LY6K(1), MTX1(1), GPR78(1), THBS3(1), HMX1(1) +2 more
0.063 0.875 9.99e-25 2.42e-23 ✓ sig. —
Coronary artery disease Migraine
95 genes
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28 of 95 corroborated by 2+ sources
CASZ1(1), PRDM16(3), SKI(1), JMJD1C(1), SERPINA1(1), ADARB2(1), BAZ1B(1), C1GALT1(1), CDH13(1), CPS1(1), ERBB4(1), ETV1(1) +83 more
0.065 0.235 8.95e-25 2.17e-23 ✓ sig. Cluster 78 →
Chiari-frommel syndrome Hyperproinsulinemia
7 genes
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6 of 7 corroborated by 2+ sources
PRL(2), DRD2(2), GAD1(2), PRLR(3), GNRH1(2), LHB(2), PGR(1)
0.700 1.000 8.85e-25 2.14e-23 ✓ sig. Cluster 325 →
Congenital contractural arachnodactyly Loeys-dietz syndrome
10 genes
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10 of 10 corroborated by 2+ sources
FBN1(2), FBN2(7), TGFB2(6), SMAD3(4), COL3A1(2), TGFBR1(6), TGFBR2(7), TGFB3(5), SMAD2(8), IPO8(3)
0.278 0.625 7.74e-25 1.88e-23 ✓ sig. Cluster 12 →
Maturity-onset diabetes of the young monogenic diabetes
8 genes
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8 of 8 corroborated by 2+ sources
INS(2), ABCC8(2), HNF4A(2), KCNJ11(2), GCK(2), HNF1A(2), PDX1(2), NEUROD1(3)
0.500 0.800 7.40e-25 1.80e-23 ✓ sig. Cluster 36 →
Arrhythmogenic right ventricular cardiomyopathy Restrictive cardiomyopathy
12 genes
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8 of 12 corroborated by 2+ sources
DMD(1), DSP(4), MYH6(1), FLNC(3), DES(4), MYH7(3), MYL3(3), TTN(2), ACTC1(1), MYL2(1), TNNI3(3), TNNT2(3)
0.188 0.522 7.36e-25 1.79e-23 ✓ sig. Cluster 4 →
Diabetic neuropathy Kidney failure
36 genes
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28 of 36 corroborated by 2+ sources
INS(2), CAT(2), NOTCH2(2), COL4A3(2), ACE(2), AGT(2), MME(2), SERPINE1(2), TCF7L2(1), VEGFA(2), NOS3(2), EPO(2) +24 more
0.080 0.154 6.53e-25 1.59e-23 ✓ sig. —
Bardet-biedl syndrome Nephronophthisis
14 genes
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13 of 14 corroborated by 2+ sources
MKKS(7), NPHP4(7), RPGRIP1L(2), NPHP3(6), TMEM67(4), NPHP1(7), CEP290(5), IFT172(5), TTC21B(5), WDR19(5), SDCCAG8(7), BBS9(5) +2 more
0.163 0.350 5.98e-25 1.46e-23 ✓ sig. Cluster 8 →
Congestive heart failure Hypotension
21 genes
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21 of 21 corroborated by 2+ sources
INS(2), CAT(2), ACE(2), AGT(2), REN(2), GCG(2), IL1B(2), TNF(2), PRL(2), AVP(2), IL6(2), POMC(2) +9 more
0.093 0.313 5.82e-25 1.42e-23 ✓ sig. —
Heterotaxy syndrome Situs inversus
10 genes
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9 of 10 corroborated by 2+ sources
PKD1L1(4), ZIC3(5), CIROP(3), MNS1(3), TEX9(1), MMP21(5), CFAP53(4), ACVR2B(5), CFAP52(4), NODAL(6)
0.303 0.500 5.76e-25 1.41e-23 ✓ sig. Cluster 46 →
Erythrocytosis Polycythemia
9 genes
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8 of 9 corroborated by 2+ sources
HBA1(6), EPO(5), EPOR(3), HBB(5), JAK2(4), EPAS1(5), VHL(3), EGLN1(5), INSL6(1)
0.375 0.692 4.93e-25 1.20e-23 ✓ sig. Cluster 105 →
Fatty liver, alcoholic Nonalcoholic fatty liver disease
27 genes
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24 of 27 corroborated by 2+ sources
INS(2), MTTP(3), CAT(2), PTEN(2), APOE(2), FGF21(2), LDLR(2), SREBF1(2), F2(2), LEP(2), MTHFR(1), NFE2L2(2) +15 more
0.072 0.314 4.78e-25 1.17e-23 ✓ sig. —
Developmental and epileptic encephalopathy Non-specific syndromic intellectual disability
41 genes
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29 of 41 corroborated by 2+ sources
GABRD(1), HNRNPU(4), ATP1A3(5), ACTL6B(5), ANO4(1), CELF2(5), CHD2(4), CNTNAP2(2), EPHA4(1), GRIN2B(4), KCNQ2(7), MEF2C(1) +29 more
0.075 0.186 4.76e-25 1.17e-23 ✓ sig. Cluster 6 →
Obstructive pulmonary disease Respiratory system disease
51 genes
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RERE(1), RREB1(1), EMSY(1), FADS1(1), FADS2(1), GABBR1(1), HLA-DQA1(1), ITGB8(1), RIN3(1), TBL1XR1(1), TET2(1), TSPAN14(1) +39 more
0.068 0.212 4.47e-25 1.10e-23 ✓ sig. Cluster 252 →
Neonatal diabetes mellitus Permanent neonatal diabetes mellitus
9 genes
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8 of 9 corroborated by 2+ sources
INS(5), GATA4(2), INS-IGF2(1), ABCC8(5), KCNJ11(5), GCK(6), SLC2A2(2), PDX1(4), MNX1(2)
0.391 0.643 3.63e-25 8.92e-24 ✓ sig. Cluster 36 →
Congenital microcephaly Microcephaly
15 genes
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14 of 15 corroborated by 2+ sources
FOXG1(2), CASK(2), ASPM(5), CDK5RAP2(4), PNKP(6), MCPH1(6), CIT(5), WDR62(6), CEP152(5), CPAP(6), KNL1(5), PHC1(5) +3 more
0.122 0.484 3.62e-25 8.90e-24 ✓ sig. Cluster 101 →
Congenital aneurysm of ascending aorta Thoracic aortic aneurysm and aortic dissection
10 genes
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7 of 10 corroborated by 2+ sources
FBN1(5), SMAD3(5), FOXE3(5), COL3A1(1), MYH11(5), NDE1(1), TGFBR2(5), LOX(5), SRFBP1(1), MYLK(5)
0.227 0.833 3.58e-25 8.82e-24 ✓ sig. Cluster 12 →
Graves disease Hyperthyroidism
17 genes
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10 of 17 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), ICOS(1), VEGFA(2), TNF(2), HLA-DQB1(2), BACH2(1), CTLA4(3), IL2RA(1), MUC22(1), PTPN22(3), TG(3) +5 more
0.125 0.321 3.47e-25 8.56e-24 ✓ sig. Cluster 39 →
Metabolic syndrome Willis-ekbom disease
67 genes
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2 of 67 corroborated by 2+ sources
ADGRB3(1), ALCAM(1), ASB3(1), BTBD9(3), CAMTA1(1), CNTNAP2(1), DAB1(1), GRIA1(1), HLA-DRB1(1), IGSF11(1), LINGO2(1), LSAMP(1) +55 more
0.047 0.351 3.25e-25 8.01e-24 ✓ sig. Cluster 2 →
Cerebellar ataxia Spastic ataxia
19 genes
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4 of 19 corroborated by 2+ sources
CACNA1A(1), CACNA1G(1), SCN8A(2), SETX(1), PNPLA6(1), ITPR1(1), HARS1(1), ERCC4(1), DNMT1(1), FLNC(1), SEPSECS(1), SYNE1(1) +7 more
0.114 0.271 3.21e-25 7.93e-24 ✓ sig. Cluster 79 →
Complex cortical dysplasia with other brain malformations Cortical dysplasia with other brain malformations
8 genes
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8 of 8 corroborated by 2+ sources
TUBG1(4), KIF26A(5), TUBB2A(5), KIF5C(5), TUBB(4), TUBB3(4), TUBB2B(6), KIF2A(5)
0.444 1.000 3.11e-25 7.69e-24 ✓ sig. Cluster 176 →
Bipolar depression Depression
28 genes
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COMT(1), INS(1), DISC1(1), HTR1A(1), NTRK2(1), RELN(1), BDNF(1), MAOA(1), MTHFR(1), S100B(1), DRD1(1), GAD1(1) +16 more
0.078 0.267 3.06e-25 7.58e-24 ✓ sig. Cluster 2 →
Liver neoplasms Lung neoplasms
31 genes
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TERT(1), TP53(1), BRAF(1), ESR1(1), HMOX1(1), IL2(1), NFE2L2(1), STAT3(1), TNF(1), XPC(1), FHIT(1), GSTM1(1) +19 more
0.082 0.204 2.96e-25 7.34e-24 ✓ sig. Cluster 5 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.