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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
C3 glomerulonephritis Mesangiocapillary glomerulonephritis
6 genes
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6 of 6 corroborated by 2+ sources
CFHR1(3), CFI(4), C3(4), CFB(4), CFH(4), CFHR5(6)
0.545 0.750 4.24e-20 8.11e-19 ✓ sig. Cluster 359 →
Mastocytosis Systemic mastocytosis
9 genes
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1 of 9 corroborated by 2+ sources
HBE1(1), HBG2(1), KIT(5), CLIC1(1), MSH5(1), ABCA2(1), OR51B5(1), MOCS1(1), OR51Q1(1)
0.209 0.391 4.15e-20 7.95e-19 ✓ sig. Cluster 235 →
Anophthalmia Anophthalmia/microphthalmia-esophageal atresia syndrome
8 genes
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5 of 8 corroborated by 2+ sources
WNT7B(1), ELP4(1), PAX6(2), SOX2(4), STRA6(2), OTX2(2), RAX(3), VSX2(1)
0.250 0.571 4.13e-20 7.91e-19 ✓ sig. Cluster 56 →
Meniere disease Nonsyndromic hearing loss
16 genes
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14 of 16 corroborated by 2+ sources
COL11A1(3), MYO1C(2), OTOGL(1), PCDH15(3), OTOG(3), TNC(4), MYO6(4), TRIOBP(3), CDH23(3), MYO7A(4), WFS1(3), TBCEL-TECTA(1) +4 more
0.094 0.239 4.01e-20 7.70e-19 ✓ sig. Cluster 26 →
Brain infarction Cerebral amyloid angiopathy
12 genes
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1 of 12 corroborated by 2+ sources
APOE(3), CDKAL1(1), KAZN(1), PTPRD(1), SGK1(1), HS3ST4(1), ATP10A(1), POLD3(1), ABTB2(1), KCNB2(1), RAG1(1), SLC29A4(1)
0.125 0.333 3.99e-20 7.65e-19 ✓ sig. —
Congenital microcephaly Primary microcephaly
10 genes
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10 of 10 corroborated by 2+ sources
ASPM(4), CDK5RAP2(4), MCPH1(3), CIT(3), WDR62(3), CEP152(3), CPAP(3), KNL1(3), PHC1(3), STIL(4)
0.175 0.323 3.83e-20 7.37e-19 ✓ sig. Cluster 101 →
Arteriosclerosis Atherosclerosis
14 genes
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14 of 14 corroborated by 2+ sources
APOB(2), APOE(3), LDLR(3), NOS3(2), ESR1(2), ICAM1(2), PON1(2), TLR4(2), PTGS2(2), HP(2), ABCG5(2), VCAM1(2) +2 more
0.095 0.341 3.65e-20 7.02e-19 ✓ sig. —
Atopic dermatitis Autoimmune hepatitis
12 genes
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10 of 12 corroborated by 2+ sources
IL10(2), IL2(2), IL4(2), IL6(2), VDR(1), TGFB1(2), IFNG(2), CTLA4(1), IL13(2), IL18(2), CCL5(2), IL5(2)
0.129 0.316 3.32e-20 6.39e-19 ✓ sig. Cluster 16 →
Male infertility globozoospermia Male infertility round headed spermatozoa
6 genes
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6 of 6 corroborated by 2+ sources
PICK1(3), SPATA16(2), SEPTIN4(2), DPY19L2(3), ZPBP(2), GGN(2)
0.545 0.857 3.18e-20 6.13e-19 ✓ sig. —
Azoospermia Spermatogenic failure
13 genes
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12 of 13 corroborated by 2+ sources
C14orf39(4), MSH5(4), FANCM(4), TDRD9(4), BRDT(4), DMC1(2), FAHD1(1), KASH5(3), MEIOB(4), MOV10L1(3), PDHA2(4), SYCP3(5) +1 more
0.097 0.406 3.07e-20 5.91e-19 ✓ sig. Cluster 31 →
Cataract-microcornea syndrome Nuclear cataract
7 genes
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7 of 7 corroborated by 2+ sources
CRYBB2(3), CRYAA(3), NHS(3), GJA8(4), CRYGC(3), CRYBB1(3), CRYGD(3)
0.333 0.778 2.81e-20 5.43e-19 ✓ sig. Cluster 43 →
Anemia Hemolytic anemia
14 genes
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11 of 14 corroborated by 2+ sources
EPO(3), GSR(5), ABO(2), ANK1(1), G6PD(2), GATA1(2), HBB(2), HK1(3), HP(2), IFNA2(1), ITPA(2), SHH(2) +2 more
0.111 0.255 2.42e-20 4.67e-19 ✓ sig. Cluster 105 →
nonsyndromic genetic hearing loss Nonsyndromic intellectual disability
18 genes
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18 of 18 corroborated by 2+ sources
OTOF(3), OTOGL(3), TMC1(3), MET(3), DCDC2(3), TBC1D24(2), CABP2(3), LOXHD1(3), KARS1(3), ELMOD3(3), LHFPL5(4), MSRB3(3) +6 more
0.087 0.220 2.40e-20 4.63e-19 ✓ sig. —
Hyperalgesia Hypotension
15 genes
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AGT(1), GRIN2B(1), IL1A(1), IL1B(1), TNF(1), AVP(1), IL6(1), PDYN(1), TAC1(1), KNG1(1), BDKRB2(1), CNR1(1) +3 more
0.106 0.224 2.12e-20 4.10e-19 ✓ sig. Cluster 13 →
Focal glomerulosclerosis Focal segmental glomerulosclerosis
11 genes
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10 of 11 corroborated by 2+ sources
ACTN4(3), ARHGAP24(1), CD2AP(5), MYO1E(4), PAX2(4), TRPC6(5), APOL1(4), TRIM8(4), ANLN(4), CRB2(5), INF2(5)
0.145 0.379 2.11e-20 4.09e-19 ✓ sig. Cluster 30 →
Hypersensitivity Rhinitis
14 genes
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14 of 14 corroborated by 2+ sources
CCL24(2), HLA-DQA1(2), MS4A2(2), IL10(2), IL1B(2), IL4(2), TNF(2), HLA-DQB1(2), ALB(2), IFNG(2), IL17A(2), CCR2(2) +2 more
0.115 0.215 2.06e-20 4.00e-19 ✓ sig. Cluster 16 →
Arthrogryposis multiplex congenita Distal arthrogryposis
10 genes
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8 of 10 corroborated by 2+ sources
PIEZO2(4), RYR1(1), ECEL1(5), MYH3(5), TPM2(5), CNTNAP1(1), MYH8(2), NALCN(2), TNNI2(5), TNNT3(5)
0.127 0.625 2.04e-20 3.96e-19 ✓ sig. —
Macular and posterior pole degeneration Retinopathy
9 genes
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CFI(1), C3(1), CD46(1), PDGFB(1), RPL3(1), CETP(1), CFH(1), RDH5(1), ARMS2(1)
0.158 0.692 1.95e-20 3.78e-19 ✓ sig. Cluster 187 →
46,xy gonadal dysgenesis Swyer syndrome
7 genes
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7 of 7 corroborated by 2+ sources
NR5A1(2), SOX9(2), SRY(2), CBX2(2), DHH(2), DHX37(2), MAP3K1(2)
0.368 0.700 1.90e-20 3.69e-19 ✓ sig. Cluster 38 →
Neurotic disorder Psychiatric disorders
39 genes
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1 of 39 corroborated by 2+ sources
B3GALT1(1), CAMTA1(1), CTNNA3(1), DCC(1), ERBB4(1), FAM135B(1), GABBR1(1), IGSF11(1), LSAMP(1), MAPT(2), RBMS3(1), SORCS3(1) +27 more
0.063 0.178 1.79e-20 3.49e-19 ✓ sig. —
Hypercholesterolemia Ischemic heart disease
16 genes
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11 of 16 corroborated by 2+ sources
APOA1(1), ABCA1(2), APOB(6), APOE(2), EPHX2(3), LDLR(6), LIPC(1), HMGCR(2), LPL(2), PON1(2), PON2(1), ABCG5(1) +4 more
0.080 0.348 1.77e-20 3.45e-19 ✓ sig. —
Color vision deficiency Oligodendroglioma
97 genes
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SOX5(1), WWOX(1), AGBL1(1), C6orf118(1), CADPS(1), CAMK1D(1), CDH13(1), CPNE4(1), DAB1(1), DOCK4(1), EGLN3(1), FBXL7(1) +85 more
0.068 0.174 1.68e-20 3.28e-19 ✓ sig. Cluster 2 →
Oligodendroglioma Scoliosis
101 genes
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1 of 101 corroborated by 2+ sources
WWOX(1), ADGRB3(1), ALCAM(1), ANK3(1), C6orf118(1), CDH13(1), CHN2(1), CNTNAP2(1), DAB1(1), DCC(1), DEPTOR(1), DGKB(1) +89 more
0.068 0.181 1.67e-20 3.27e-19 ✓ sig. Cluster 2 →
Brugada syndrome Cardiac arrest
11 genes
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9 of 11 corroborated by 2+ sources
CACNB2(6), SLMAP(4), TRPM4(4), DSP(1), RYR2(1), SCN5A(8), ANK2(3), HCN4(7), CACNA2D1(4), AKAP9(2), KCNJ8(4)
0.139 0.423 1.58e-20 3.08e-19 ✓ sig. Cluster 4 →
Megaloblastic anemia Vitamin b deficiency
7 genes
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4 of 7 corroborated by 2+ sources
FUT2(2), TCN2(3), CUBN(2), AMN(1), TCN1(2), MMAA(1), OOSP3(1)
0.389 0.583 1.54e-20 3.01e-19 ✓ sig. Cluster 106 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.