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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital ichthyosiform erythroderma Ichthyosis
6 genes
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6 of 6 corroborated by 2+ sources
TGM1(2), ABCA12(2), ALOX12B(2), ALOXE3(2), PNPLA1(2), CERS3(2)
0.300 0.667 3.63e-17 5.98e-16 ✓ sig. Cluster 233 →
Carbohydrate metabolism disease Carbohydrate metabolism disorder
5 genes
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1 of 5 corroborated by 2+ sources
TPI1(1), ACAT1(1), MPI(1), PRKAG3(2), TALDO1(1)
0.455 1.000 3.50e-17 5.77e-16 ✓ sig. Cluster 354 →
monogenic diabetes Permanent neonatal diabetes mellitus
6 genes
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6 of 6 corroborated by 2+ sources
INS(6), ABCC8(6), KCNJ11(6), GCK(7), PDX1(5), NEUROD1(2)
0.316 0.600 3.40e-17 5.62e-16 ✓ sig. Cluster 36 →
Congenital neurologic anomalies Lissencephaly
13 genes
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2 of 13 corroborated by 2+ sources
FOXG1(1), DYNC1H1(1), CASK(1), TMEM216(1), ASPM(1), POMT1(1), POMGNT1(1), TSPAN1(1), AMPD2(1), ACTG1(1), TUBA1A(5), DCX(6) +1 more
0.085 0.260 3.16e-17 5.21e-16 ✓ sig. —
complex neurodevelopmental disorder Developmental disability
18 genes
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18 of 18 corroborated by 2+ sources
CHD8(2), GRIN2B(2), KCNQ2(3), NBEA(2), SCN8A(2), TLK2(2), GNAI1(2), SETBP1(2), ZMIZ1(2), NR4A2(2), RFX3(2), SCN2A(2) +6 more
0.074 0.153 3.16e-17 5.21e-16 ✓ sig. Cluster 6 →
Arrhythmogenic right ventricular dysplasia Conduction disorder of the heart
7 genes
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DSG2(1), JUP(1), PKP2(1), DSP(1), RYR2(1), SCN5A(1), MYH7(1)
0.219 0.500 2.90e-17 4.80e-16 ✓ sig. Cluster 4 →
Hypotension Seizures
15 genes
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INS(1), CAT(1), ADRA1B(1), AGT(1), CRH(1), IL1B(1), IL6(1), PDYN(1), POMC(1), ADORA2A(1), DRD1(1), DRD2(1) +3 more
0.077 0.224 2.88e-17 4.76e-16 ✓ sig. Cluster 13 →
Panhypopituitarism Pituitary hormone deficiency
7 genes
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5 of 7 corroborated by 2+ sources
HESX1(1), OTX2(3), LHX3(2), LHX4(3), POU1F1(4), PROP1(5), ACBD6(1)
0.152 0.778 2.84e-17 4.71e-16 ✓ sig. —
Cleft lip and palate Orofacial cleft
10 genes
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8 of 10 corroborated by 2+ sources
TP63(4), IRF6(4), BMP4(5), MSX1(4), CDH1(2), AMOTL1(3), DLG1(1), ARHGAP29(3), NECTIN1(1), DLX4(5)
0.062 0.667 2.45e-17 4.06e-16 ✓ sig. Cluster 63 →
Cerebellar atrophy Dysarthria
8 genes
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CACNA1A(1), PNPLA6(1), HARS1(1), DNMT1(1), SMC1A(1), TBC1D24(1), BIVM-ERCC5(1), ERCC5(1)
0.178 0.364 2.35e-17 3.90e-16 ✓ sig. Cluster 239 →
Anorexia nervosa Psychiatric disorders
28 genes
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1 of 28 corroborated by 2+ sources
DCC(1), ERBB4(1), NALF1(1), PTPRF(1), RIMS1(1), SORCS3(1), TCF4(1), THSD7A(1), TMEM106B(1), ZZEF1(1), DRD2(1), ANKS1B(1) +16 more
0.063 0.128 2.31e-17 3.83e-16 ✓ sig. Cluster 69 →
Megaloblastic anemia Vitamin b12 deficiency
6 genes
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3 of 6 corroborated by 2+ sources
FUT2(1), TCN2(3), CUBN(2), TCN1(2), MMAA(1), OOSP3(1)
0.333 0.545 2.30e-17 3.83e-16 ✓ sig. Cluster 106 →
Cardiofaciocutaneous syndrome Leopard syndrome
6 genes
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6 of 6 corroborated by 2+ sources
BRAF(8), NRAS(2), RAF1(5), PTPN11(6), MAP2K1(7), MAP2K2(8)
0.333 0.545 2.30e-17 3.83e-16 ✓ sig. Cluster 42 →
Atrophic macular degeneration Macular and posterior pole degeneration
8 genes
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CFI(1), C3(1), CETP(1), CFH(1), RDH5(1), ARMS2(1), C9(1), SKIC2(1)
0.129 0.615 2.30e-17 3.83e-16 ✓ sig. Cluster 187 →
Combined oxidative phosphorylation deficiency Leigh syndrome
14 genes
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14 of 14 corroborated by 2+ sources
MTRFR(7), NARS2(6), PNPT1(7), EARS2(4), FARS2(7), AIFM1(5), TSFM(4), MTFMT(6), TARS2(6), GTPBP3(7), GFM2(6), GFM1(5) +2 more
0.086 0.206 2.30e-17 3.83e-16 ✓ sig. Cluster 50 →
Gonadal dysgenesis Ovarian dysgenesis
7 genes
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7 of 7 corroborated by 2+ sources
BMP15(5), FSHR(4), MRPS22(4), NUP107(4), PSMC3IP(4), SPIDR(4), ZSWIM7(4)
0.206 0.583 2.29e-17 3.82e-16 ✓ sig. Cluster 38 →
Cor pulmonale Thromboembolic pulmonary hypertension
6 genes
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FGA(1), ABO(1), SLC44A2(1), FGG(1), F11(1), TSPAN15(1)
0.316 0.667 2.27e-17 3.79e-16 ✓ sig. Cluster 149 →
Graves disease Psoriatic arthritis
14 genes
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12 of 14 corroborated by 2+ sources
IFIH1(3), HLA-DQA1(2), TNF(2), HLA-DQB1(2), CYP1A1(1), HLA-B(2), IL17A(2), IL23R(2), MUC22(1), PTPN22(3), STAT4(2), FBXL19(3) +2 more
0.088 0.192 2.16e-17 3.60e-16 ✓ sig. —
Dry eye syndrome Sjogren syndrome
12 genes
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TWIST2(1), DCHS2(1), NAV2(1), NMT1(1), THSD7A(1), PPP2R2B(1), IL6(1), KCNB2(1), CCNG1(1), SDC2(1), C1QL1(1), FAM241B(1)
0.103 0.211 2.09e-17 3.49e-16 ✓ sig. Cluster 25 →
Cleft lip Orofacial cleft
13 genes
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12 of 13 corroborated by 2+ sources
ABCA4(3), TP63(5), FGF10(2), IRF6(4), MTHFR(2), BMP4(5), NOG(2), MSX1(4), FGFR1(2), CDH1(2), MAFB(3), SUMO1(5) +1 more
0.072 0.351 2.06e-17 3.45e-16 ✓ sig. Cluster 63 →
Substance abuse Willis-ekbom disease
36 genes
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4 of 36 corroborated by 2+ sources
ALCAM(1), CAMTA1(1), CCKBR(2), CNTNAP5(1), CRBN(1), CTNNA3(1), DAB1(1), GRIA1(2), IGSF11(1), KDM4B(1), LINGO2(1), LSAMP(1) +24 more
0.054 0.188 2.06e-17 3.44e-16 ✓ sig. Cluster 2 →
Migraine Myocardial infarction
56 genes
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17 of 56 corroborated by 2+ sources
PRDM16(3), SKI(1), RUNX1(1), SERPINA1(1), C1GALT1(1), CDH13(1), FBN2(1), HEYL(1), ICA1L(1), INPP5B(1), JCAD(1), KCNE2(1) +44 more
0.060 0.139 1.86e-17 3.11e-16 ✓ sig. Cluster 78 →
Peripheral arterial disease Peripheral vascular disease
13 genes
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1 of 13 corroborated by 2+ sources
HDAC9(1), NFAT5(1), TCF7L2(1), ATXN2(1), CHRNA3(1), TWIST1(1), ABO(1), CELSR2(1), DAB2IP(2), LPA(1), F5(1), EDNRA(1) +1 more
0.066 0.394 1.84e-17 3.08e-16 ✓ sig. Cluster 307 →
Carcinoma Pancreatic neoplasms
19 genes
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2 of 19 corroborated by 2+ sources
PTEN(1), TP53(1), TP63(2), BCL2L1(1), EGFR(1), EPCAM(1), SOD2(1), STAT3(1), EFEMP1(1), PTGS2(1), HIF1A(1), TGFB1(1) +7 more
0.072 0.162 1.82e-17 3.06e-16 ✓ sig. Cluster 5 →
Restrictive cardiomyopathy Wolff-parkinson-white syndrome
9 genes
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2 of 9 corroborated by 2+ sources
PRDM16(1), DSP(1), CACNA1C(1), MYH6(1), FLNC(3), MYH7(1), TTN(1), ACTC1(1), TNNT2(3)
0.136 0.391 1.80e-17 3.02e-16 ✓ sig. Cluster 4 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.