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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
nonsyndromic genetic hearing loss Nonsyndromic intellectual disability
18 genes
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18 of 18 corroborated by 2+ sources
OTOF(3), OTOGL(3), TMC1(3), MET(3), DCDC2(3), TBC1D24(2), CABP2(3), LOXHD1(3), KARS1(3), ELMOD3(3), LHFPL5(4), MSRB3(3) +6 more
0.087 0.220 2.40e-20 4.63e-19 ✓ sig. —
Anemia Hemolytic anemia
14 genes
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11 of 14 corroborated by 2+ sources
EPO(3), GSR(5), ABO(2), ANK1(1), G6PD(2), GATA1(2), HBB(2), HK1(3), HP(2), IFNA2(1), ITPA(2), SHH(2) +2 more
0.111 0.255 2.42e-20 4.67e-19 ✓ sig. Cluster 105 →
Cataract-microcornea syndrome Nuclear cataract
7 genes
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7 of 7 corroborated by 2+ sources
CRYBB2(3), CRYAA(3), NHS(3), GJA8(4), CRYGC(3), CRYBB1(3), CRYGD(3)
0.333 0.778 2.81e-20 5.43e-19 ✓ sig. Cluster 43 →
Azoospermia Spermatogenic failure
13 genes
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12 of 13 corroborated by 2+ sources
C14orf39(4), MSH5(4), FANCM(4), TDRD9(4), BRDT(4), DMC1(2), FAHD1(1), KASH5(3), MEIOB(4), MOV10L1(3), PDHA2(4), SYCP3(5) +1 more
0.097 0.406 3.07e-20 5.91e-19 ✓ sig. Cluster 31 →
Male infertility globozoospermia Male infertility round headed spermatozoa
6 genes
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6 of 6 corroborated by 2+ sources
PICK1(3), SPATA16(2), SEPTIN4(2), DPY19L2(3), ZPBP(2), GGN(2)
0.545 0.857 3.18e-20 6.13e-19 ✓ sig. —
Atopic dermatitis Autoimmune hepatitis
12 genes
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10 of 12 corroborated by 2+ sources
IL10(2), IL2(2), IL4(2), IL6(2), VDR(1), TGFB1(2), IFNG(2), CTLA4(1), IL13(2), IL18(2), CCL5(2), IL5(2)
0.129 0.316 3.32e-20 6.39e-19 ✓ sig. Cluster 16 →
Arteriosclerosis Atherosclerosis
14 genes
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14 of 14 corroborated by 2+ sources
APOB(2), APOE(3), LDLR(3), NOS3(2), ESR1(2), ICAM1(2), PON1(2), TLR4(2), PTGS2(2), HP(2), ABCG5(2), VCAM1(2) +2 more
0.095 0.341 3.65e-20 7.02e-19 ✓ sig. —
Congenital microcephaly Primary microcephaly
10 genes
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10 of 10 corroborated by 2+ sources
ASPM(4), CDK5RAP2(4), MCPH1(3), CIT(3), WDR62(3), CEP152(3), CPAP(3), KNL1(3), PHC1(3), STIL(4)
0.175 0.323 3.83e-20 7.37e-19 ✓ sig. Cluster 101 →
Brain infarction Cerebral amyloid angiopathy
12 genes
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1 of 12 corroborated by 2+ sources
APOE(3), CDKAL1(1), KAZN(1), PTPRD(1), SGK1(1), HS3ST4(1), ATP10A(1), POLD3(1), ABTB2(1), KCNB2(1), RAG1(1), SLC29A4(1)
0.125 0.333 3.99e-20 7.65e-19 ✓ sig. —
Meniere disease Nonsyndromic hearing loss
16 genes
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14 of 16 corroborated by 2+ sources
COL11A1(3), MYO1C(2), OTOGL(1), PCDH15(3), OTOG(3), TNC(4), MYO6(4), TRIOBP(3), CDH23(3), MYO7A(4), WFS1(3), TBCEL-TECTA(1) +4 more
0.094 0.239 4.01e-20 7.70e-19 ✓ sig. Cluster 26 →
Anophthalmia Anophthalmia/microphthalmia-esophageal atresia syndrome
8 genes
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5 of 8 corroborated by 2+ sources
WNT7B(1), ELP4(1), PAX6(2), SOX2(4), STRA6(2), OTX2(2), RAX(3), VSX2(1)
0.250 0.571 4.13e-20 7.91e-19 ✓ sig. Cluster 56 →
Mastocytosis Systemic mastocytosis
9 genes
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1 of 9 corroborated by 2+ sources
HBE1(1), HBG2(1), KIT(5), CLIC1(1), MSH5(1), ABCA2(1), OR51B5(1), MOCS1(1), OR51Q1(1)
0.209 0.391 4.15e-20 7.95e-19 ✓ sig. Cluster 235 →
C3 glomerulonephritis Mesangiocapillary glomerulonephritis
6 genes
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6 of 6 corroborated by 2+ sources
CFHR1(3), CFI(4), C3(4), CFB(4), CFH(4), CFHR5(6)
0.545 0.750 4.24e-20 8.11e-19 ✓ sig. Cluster 359 →
Cholecystolithiasis Liver disease
22 genes
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7 of 22 corroborated by 2+ sources
SERPINA1(3), ABCG8(2), APOE(1), SERPINA2(1), GCKR(1), CCK(2), ABCB1(1), HNF4A(1), UGT1A10(1), UGT1A8(1), UGT1A9(1), CYP7A1(1) +10 more
0.079 0.155 4.32e-20 8.26e-19 ✓ sig. —
Isolated sensorineural deafness Meniere disease
16 genes
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COL11A1(1), MYO1C(1), OTOGL(1), PCDH15(1), OTOG(1), TNC(1), MYO6(1), TRIOBP(1), CDH23(1), MYO7A(1), WFS1(1), MYH14(1) +4 more
0.094 0.239 4.62e-20 8.83e-19 ✓ sig. Cluster 26 →
Ciliary dyskinesia Situs ambiguus
11 genes
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10 of 11 corroborated by 2+ sources
DNAH5(7), DNAH6(2), CCDC39(7), CCDC40(6), DNAAF1(6), CFAP298-TCP10L(1), DNAAF11(7), CFAP298(8), ODAD4(7), CFAP300(7), DNAH9(6)
0.109 0.524 4.86e-20 9.27e-19 ✓ sig. —
Congenital heart defects Tetralogy of fallot
16 genes
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15 of 16 corroborated by 2+ sources
TBX1(5), GATA4(6), JAG1(6), MTHFR(2), FLNA(2), MYRF(2), MYH6(2), MYH7(2), HAND2(2), GATA6(6), ABL1(2), NIPBL(2) +4 more
0.095 0.229 4.88e-20 9.30e-19 ✓ sig. Cluster 111 →
Diabetes mellitus type 2 Scoliosis
326 genes
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35 of 326 corroborated by 2+ sources
COMT(1), COL2A1(2), PDE4D(1), SH2B3(1), ETV6(1), ADK(1), GBE1(1), IFIH1(1), SERPINF2(1), ADARB2(1), ADGRB3(1), ADGRL2(1) +314 more
0.086 0.316 5.55e-20 1.06e-18 ✓ sig. Cluster 2 →
Obesity Osteoarthritis
130 genes
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39 of 130 corroborated by 2+ sources
SOX5(1), WWOX(1), ACAN(1), AGAP1(1), AKAP1(3), ALDH1A2(2), APOC1(2), APOE(3), ASB3(1), BCAS3(1), CCDC33(1), CCDC91(1) +118 more
0.072 0.178 6.22e-20 1.18e-18 ✓ sig. Cluster 2 →
Short qt syndrome Ventricular fibrillation
8 genes
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5 of 8 corroborated by 2+ sources
CACNB2(1), TRPM4(1), KCNJ2(6), CACNA1C(3), KCNH2(5), SCN5A(3), CACNA2D1(2), VCL(1)
0.200 0.727 6.35e-20 1.21e-18 ✓ sig. —
autosomal dominant nonsyndromic hearing loss Nonsyndromic hearing loss
9 genes
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9 of 9 corroborated by 2+ sources
COL11A1(2), LMX1A(4), ATP2B2(3), RIPOR2(5), PDE1C(2), ATP11A(2), ABCC1(2), CD164(4), PLS1(3)
0.076 1.000 6.68e-20 1.27e-18 ✓ sig. Cluster 26 →
Autoimmune hepatitis Hypersensitivity
12 genes
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12 of 12 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), IL10(2), IL4(2), IL6(2), HLA-DQB1(3), TGFB1(2), IFNG(2), CCL2(2), CXCL1(2), IL13(2), IL18(2)
0.124 0.316 7.12e-20 1.35e-18 ✓ sig. Cluster 16 →
autosomal dominant nonsyndromic hearing loss Isolated sensorineural deafness
9 genes
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9 of 9 corroborated by 2+ sources
COL11A1(2), LMX1A(2), ATP2B2(2), RIPOR2(2), PDE1C(2), ATP11A(2), ABCC1(2), CD164(2), PLS1(2)
0.075 1.000 7.23e-20 1.37e-18 ✓ sig. Cluster 26 →
Anxiety disorder Depression
27 genes
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21 of 27 corroborated by 2+ sources
APP(2), CTNND2(1), DISC1(2), FOXP2(2), HTR1A(1), NTRK2(2), CRH(2), NPY(2), TNF(2), DRD2(3), DRD4(2), GAD1(1) +15 more
0.068 0.185 7.52e-20 1.42e-18 ✓ sig. Cluster 2 →
Lung neoplasms Mesothelioma
26 genes
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1 of 26 corroborated by 2+ sources
WT1(3), APOA1(1), TP53(1), EGFR(1), SPP1(1), ESR1(1), IL6(1), EPHX1(1), FHIT(1), GSTM1(1), EFEMP1(1), EGR1(1) +14 more
0.070 0.179 7.83e-20 1.48e-18 ✓ sig. Cluster 5 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.