Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital skin anomaly Skin abnormalities
10 genes
Show details
10 of 10 corroborated by 2+ sources
TP63(2), ERCC2(2), GORAB(2), IRF6(2), SOD2(2), FGFR2(2), CHUK(2), ZNF469(2), APAF1(2), SUPV3L1(2)
0.909 1.000 4.86e-36 1.83e-34 ✓ sig. Cluster 377 →
Global developmental delay Strabismus
26 genes
Show details
1 of 26 corroborated by 2+ sources
FOXG1(1), NFIX(1), BFSP2(1), CACNA1A(1), FBN2(1), SIL1(1), GALC(1), SLC9A6(1), GNB1(2), POGZ(1), NALCN(1), ASXL3(1) +14 more
0.069 0.765 5.02e-36 1.89e-34 ✓ sig. —
Male infertility single gene azoospermia Testicular azoospermia
20 genes
Show details
17 of 20 corroborated by 2+ sources
NR5A1(3), DMRT1(1), KLHL10(3), STAG3(2), C14orf39(2), MSH5(2), TEX15(2), GCNA(2), MOV10L1(2), TERB1(2), RNF212(2), ZSWIM7(3) +8 more
0.165 0.606 5.61e-36 2.11e-34 ✓ sig. Cluster 31 →
Congenital ear anomaly Hereditary hearing loss
17 genes
Show details
17 of 17 corroborated by 2+ sources
MYO15A(2), OTOF(2), PCDH15(2), TMC1(2), SLC26A4(2), COL11A2(2), MYO6(2), CDH23(2), MYO7A(2), GJB2(2), TECTA(2), LHFPL5(2) +5 more
0.262 0.548 5.92e-36 2.23e-34 ✓ sig. Cluster 26 →
Amelogenesis imperfecta Dentinogenesis imperfecta
13 genes
Show details
13 of 13 corroborated by 2+ sources
SLC24A4(5), AMBN(5), AMELX(6), DLX3(3), ENAM(6), FAM20A(5), FAM83H(5), ITGB6(4), KLK4(5), LAMB3(5), MMP20(5), ODAPH(5) +1 more
0.448 0.813 6.65e-36 2.49e-34 ✓ sig. Cluster 366 →
Heart disease Ischemic heart disease
34 genes
Show details
33 of 34 corroborated by 2+ sources
ABCG8(2), APOE(2), ICA1L(2), JCAD(2), KCNE2(2), LDLR(2), VEGFA(2), NOS3(2), EPO(2), F2(2), LPL(2), PON1(2) +22 more
0.120 0.233 6.64e-36 2.49e-34 ✓ sig. Cluster 139 →
Breast neoplasms Stomach neoplasms
67 genes
Show details
3 of 67 corroborated by 2+ sources
DPYD(1), BMP2(1), WWOX(1), NOTCH2(1), CHEK2(2), TP53(1), CDH2(1), ARID1A(1), EGFR(1), FST(1), RARB(1), SREBF2(1) +55 more
0.089 0.219 7.65e-36 2.86e-34 ✓ sig. Cluster 5 →
Epilepsy Seizures
37 genes
Show details
34 of 37 corroborated by 2+ sources
FOXG1(2), CHRNA7(3), ATP1A3(1), CPA6(2), HCN1(2), HTR1A(2), KCNQ2(5), RBFOX1(3), SCN8A(5), SLC6A1(2), ACHE(2), BCHE(2) +25 more
0.109 0.262 8.39e-36 3.13e-34 ✓ sig. —
Lymphocytic leukemia Multiple myeloma
30 genes
Show details
3 of 30 corroborated by 2+ sources
DTNB(1), GRAMD1B(1), HLA-DQA1(1), HLA-DRB1(1), ULK4(2), BCL2(2), HLA-DQB1(1), EXOC2(1), IRF4(2), EOMES(1), SP140(1), LPP(1) +18 more
0.131 0.261 9.00e-36 3.35e-34 ✓ sig. Cluster 225 →
Corneal neovascularization Keratitis
13 genes
Show details
PID1(1), MSI2(1), TMEM74(1), TRHR(1), STK11(1), ADCY2(1), PDE1C(1), NT5C1B(1), NLRP1(1), WSCD1(1), NT5C1B-RDH14(1), IL17RE(1) +1 more
0.464 0.722 9.72e-36 3.61e-34 ✓ sig. —
Periodontal disease Periodontitis
18 genes
Show details
1 of 18 corroborated by 2+ sources
CAMK2N1(1), CCR7(1), FKBP1C(1), KALRN(1), TSEN2(1), PPARG(1), IL6(1), PIK3C3(1), SMARCE1(1), MBP(1), ITGA4(1), SYNDIG1(1) +6 more
0.113 0.947 1.11e-35 4.10e-34 ✓ sig. —
Arrhythmogenic right ventricular cardiomyopathy Wolff-parkinson-white syndrome
19 genes
Show details
9 of 19 corroborated by 2+ sources
ABCC9(1), ACTN2(1), JUP(5), PRKAG2(5), RBM20(1), TRPM4(1), DSP(4), MYH6(1), FLNC(1), LMNA(2), RYR2(3), SCN5A(3) +7 more
0.224 0.373 1.17e-35 4.33e-34 ✓ sig. Cluster 4 →
Bipolar depression Mood disorder
36 genes
Show details
6 of 36 corroborated by 2+ sources
COMT(1), CACNA1D(1), SERPINA1(1), ANK3(1), DISC1(1), GRIK2(1), HTR1A(1), NTRK2(1), PDE4B(2), RELN(2), THSD7A(2), BDNF(1) +24 more
0.098 0.343 1.29e-35 4.78e-34 ✓ sig. Cluster 2 →
Cone dystrophy Optic atrophy
23 genes
Show details
4 of 23 corroborated by 2+ sources
ABCA4(1), CNGA3(1), CNGB3(3), PDE6C(7), PRPH2(1), CACNA1F(1), ABHD12(1), PCDH15(1), USH2A(1), CRB1(1), GUCY2D(1), RPGRIP1(1) +11 more
0.117 0.605 1.30e-35 4.79e-34 ✓ sig. Cluster 7 →
Congenital stationary night blindness Night blindness, congenital stationary
12 genes
Show details
11 of 12 corroborated by 2+ sources
CACNA1F(4), PDE6B(6), TRPM1(5), CABP4(1), RHO(6), GNB3(5), GNAT1(5), GPR179(6), GRM6(5), LRIT3(5), NYX(5), SLC24A1(5)
0.462 1.000 1.41e-35 5.18e-34 ✓ sig. Cluster 151 →
Cardiac arrhythmia Cardioembolic stroke
26 genes
Show details
5 of 26 corroborated by 2+ sources
PRRX1(1), ESR2(3), GORAB(1), KCNN2(3), KCNN3(1), TBX5(1), CAV1(1), CAV2(1), AOPEP(1), FAM13B(1), FGF5(1), LRMDA(1) +14 more
0.149 0.265 1.41e-35 5.18e-34 ✓ sig. —
Lung neoplasms Stomach neoplasms
50 genes
Show details
HNF1B(1), DPYD(1), SOX9(1), APOA1(1), NOTCH2(1), CHEK2(1), TP53(1), SERPINA1(1), ACE(1), BCL2L1(1), EGFR(1), ERCC1(1) +38 more
0.098 0.197 1.41e-35 5.19e-34 ✓ sig. Cluster 5 →
Cardiac arrhythmia Long qt syndrome
26 genes
Show details
21 of 26 corroborated by 2+ sources
KCNE2(7), PKP2(2), TBX5(3), CALM1(6), DSP(1), KCNJ2(3), CACNA1C(7), MYH6(2), SYNE2(2), CALM2(6), CALM3(7), CASQ2(2) +14 more
0.149 0.265 1.88e-35 6.90e-34 ✓ sig. Cluster 4 →
Loeys-dietz syndrome Marfan syndrome
14 genes
Show details
13 of 14 corroborated by 2+ sources
FBN1(7), COL5A1(2), FBN2(2), TGFB2(6), SMAD3(4), COL3A1(2), MYH11(2), TGFBR1(6), TGFBR2(7), MYLK(2), TGFB3(5), SMAD2(8) +2 more
0.304 0.875 1.95e-35 7.14e-34 ✓ sig. Cluster 12 →
Lung cancer Upper aerodigestive tract neoplasm
55 genes
Show details
4 of 55 corroborated by 2+ sources
CHEK2(1), TP53(1), ABT1(1), GRIK1(1), HCN1(1), HLA-DQA1(1), HLA-DRA(1), HLA-DRB1(1), HMGN4(1), NTM(1), NYAP2(1), OR2B2(1) +43 more
0.073 0.342 2.04e-35 7.45e-34 ✓ sig. —
Spermatogenic failure Testicular azoospermia
20 genes
Show details
20 of 20 corroborated by 2+ sources
NR5A1(4), DMRT1(2), KLHL10(5), STAG3(4), C14orf39(4), MSH5(4), TEX15(4), DMC1(2), MOV10L1(3), TERB1(3), RNF212(4), ZSWIM7(3) +8 more
0.156 0.606 2.24e-35 8.17e-34 ✓ sig. Cluster 31 →
Amelogenesis imperfecta Dentin dysplasia
13 genes
Show details
13 of 13 corroborated by 2+ sources
SLC24A4(5), AMBN(5), AMELX(6), DLX3(3), ENAM(6), FAM20A(5), FAM83H(5), ITGB6(4), KLK4(5), LAMB3(5), MMP20(5), ODAPH(5) +1 more
0.433 0.765 2.82e-35 1.03e-33 ✓ sig. Cluster 366 →
Keratinocyte carcinoma Non-small cell lung carcinoma
25 genes
Show details
3 of 25 corroborated by 2+ sources
ANKRD11(1), TERT(2), BNC2(1), FOXP1(1), HERC2(1), HLA-DQA1(1), HLA-DRB1(1), TRPS1(1), RALY(1), IRF4(1), KRT5(1), BACH2(1) +13 more
0.149 0.325 3.57e-35 1.30e-33 ✓ sig. Cluster 29 →
Atrial fibrillation Hypertension
173 genes
Show details
56 of 173 corroborated by 2+ sources
HMGA2(1), YWHAE(1), CASZ1(3), GATA4(3), ZFPM2(1), ATP2A2(2), RUNX1(1), AMPD3(1), CACNA1D(1), ACE(2), ADRA1A(2), AGT(3) +161 more
0.094 0.200 4.26e-35 1.54e-33 ✓ sig. Cluster 78 →
Hyperthyroidism Thyroid disease
19 genes
Show details
1 of 19 corroborated by 2+ sources
NFIA(1), HLA-DQA1(1), ICOS(1), PDE10A(1), VEGFA(1), HLA-DQB1(2), BACH2(1), CTLA4(1), IL2RA(1), PHTF1(1), PTPN22(1), RSBN1(1) +7 more
0.216 0.358 4.45e-35 1.61e-33 ✓ sig. Cluster 39 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.