Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 16
23
Diseases
645
Unique genes
0.066
Avg. similarity score
Atopic dermatitis
Most-connected disease (8 links)
Disease
Searched: Autoinflammation with episodic fever and immune dysregulation
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Autoinflammation with episodic fever and immune dysregulation
Atopic dermatitis
Allergic contact dermatitis
Hypersensitivity
Rhinitis
Autoimmune hepatitis
Dermatitis
Eosinophilia
Glomerulonephritis
Urticaria
Behcet disease
Contact dermatitis
Uveitis
hyper-ige syndrome 6, autosomal dominant, with recurrent infections
Angioedema
Carnosinemia
ITPKB deficiency
Lewis lung carcinoma
Microscopic polyangiitis
fontaine progeroid syndrome
jaberi-elahi syndrome
phosphohydroxylysinuria
systemic lupus erythematosus 17
Member diseases (most connected first ‐ the cluster's core)
| Disease ⇵ | Connections in cluster ⇵ | Significant partners ⇵ | Curated genes ⇵ |
|---|---|---|---|
| Atopic dermatitis | 8 | 8 | 66 |
| Allergic contact dermatitis | 7 | 7 | 73 |
| Hypersensitivity | 7 | 7 | 70 |
| Rhinitis | 7 | 7 | 65 |
| Autoimmune hepatitis | 6 | 6 | 38 |
| Dermatitis | 5 | 5 | 38 |
| Eosinophilia | 5 | 5 | 112 |
| Glomerulonephritis | 5 | 5 | 97 |
| Urticaria | 5 | 5 | 46 |
| Behcet disease | 3 | 3 | 105 |
| Contact dermatitis | 3 | 3 | 75 |
| Autoinflammation with episodic fever and immune dysregulation | 2 | 2 | 1 |
| Uveitis | 2 | 2 | 33 |
| hyper-ige syndrome 6, autosomal dominant, with recurrent infections | 2 | 2 | 1 |
| Angioedema | 1 | 1 | 57 |
| Carnosinemia | 1 | 1 | 1 |
| ITPKB deficiency | 1 | 1 | 1 |
| Lewis lung carcinoma | 1 | 1 | 2 |
| Microscopic polyangiitis | 1 | 1 | 1 |
| fontaine progeroid syndrome | 1 | 1 | 1 |
| jaberi-elahi syndrome | 1 | 1 | 1 |
| phosphohydroxylysinuria | 1 | 1 | 1 |
| systemic lupus erythematosus 17 | 1 | 1 | 1 |
Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| IL18 | 9 / 23 | Allergic contact dermatitis, Atopic dermatitis, Autoimmune hepatitis, Behcet disease and 5 more |
| TNF | 9 / 23 | Allergic contact dermatitis, Atopic dermatitis, Behcet disease, Dermatitis and 5 more |
| HLA-DRB1 | 8 / 23 | Angioedema, Autoimmune hepatitis, Behcet disease, Dermatitis and 4 more |
| IL10 | 8 / 23 | Allergic contact dermatitis, Atopic dermatitis, Autoimmune hepatitis, Behcet disease and 4 more |
| HLA-DQA1 | 7 / 23 | Autoimmune hepatitis, Dermatitis, Eosinophilia, Glomerulonephritis and 3 more |
| IL1B | 7 / 23 | Atopic dermatitis, Behcet disease, Glomerulonephritis, Hypersensitivity and 3 more |
| IL4 | 7 / 23 | Allergic contact dermatitis, Atopic dermatitis, Autoimmune hepatitis, Behcet disease and 3 more |
| TGFB1 | 7 / 23 | Atopic dermatitis, Autoimmune hepatitis, Behcet disease, Eosinophilia and 3 more |
| ALB | 6 / 23 | Angioedema, Glomerulonephritis, Hypersensitivity, Rhinitis and 2 more |
| HLA-DQB1 | 6 / 23 | Angioedema, Autoimmune hepatitis, Behcet disease, Hypersensitivity and 2 more |
| IFNG | 6 / 23 | Allergic contact dermatitis, Atopic dermatitis, Autoimmune hepatitis, Glomerulonephritis and 2 more |
| IL13 | 6 / 23 | Atopic dermatitis, Autoimmune hepatitis, Dermatitis, Hypersensitivity and 2 more |
| IL2 | 6 / 23 | Allergic contact dermatitis, Atopic dermatitis, Autoimmune hepatitis, Behcet disease and 2 more |
| TLR4 | 6 / 23 | Allergic contact dermatitis, Atopic dermatitis, Behcet disease, Contact dermatitis and 2 more |
| CYP1A1 | 5 / 23 | Allergic contact dermatitis, Atopic dermatitis, Behcet disease, Contact dermatitis and 1 more |
| IL6 | 5 / 23 | Atopic dermatitis, Autoimmune hepatitis, Glomerulonephritis, Hypersensitivity and 1 more |
| CCL2 | 4 / 23 | Autoimmune hepatitis, Behcet disease, Glomerulonephritis, Hypersensitivity |
| CCR1 | 4 / 23 | Allergic contact dermatitis, Behcet disease, Contact dermatitis, Hypersensitivity |
| CCR2 | 4 / 23 | Allergic contact dermatitis, Hypersensitivity, Rhinitis, Uveitis |
| CXCR3 | 4 / 23 | Atopic dermatitis, Contact dermatitis, Glomerulonephritis, Hypersensitivity |
| EMSY | 4 / 23 | Atopic dermatitis, Dermatitis, Eosinophilia, Rhinitis |
| HLA-B | 4 / 23 | Behcet disease, Dermatitis, Hypersensitivity, Uveitis |
| IL5 | 4 / 23 | Allergic contact dermatitis, Atopic dermatitis, Autoimmune hepatitis, Eosinophilia |
| STAT6 | 4 / 23 | Atopic dermatitis, Eosinophilia, hyper-ige syndrome 6, autosomal dominant, with recurrent infections, Urticaria |
| TLR2 | 4 / 23 | Atopic dermatitis, Behcet disease, Eosinophilia, Rhinitis |
| AHR | 3 / 23 | Atopic dermatitis, Behcet disease, Contact dermatitis |
| CCL24 | 3 / 23 | Atopic dermatitis, Hypersensitivity, Rhinitis |
| CCL5 | 3 / 23 | Atopic dermatitis, Autoimmune hepatitis, Glomerulonephritis |
| CCR3 | 3 / 23 | Atopic dermatitis, Behcet disease, Rhinitis |
| CCR5 | 3 / 23 | Atopic dermatitis, Behcet disease, Uveitis |
| CLEC16A | 3 / 23 | Dermatitis, Eosinophilia, Rhinitis |
| CTLA4 | 3 / 23 | Atopic dermatitis, Autoimmune hepatitis, Behcet disease |
| DSG1 | 3 / 23 | Dermatitis, Eosinophilia, Hypersensitivity |
| FLG | 3 / 23 | Atopic dermatitis, Contact dermatitis, Dermatitis |
| HLA-DPB1 | 3 / 23 | Angioedema, Autoimmune hepatitis, Urticaria |
| HNMT | 3 / 23 | Atopic dermatitis, Rhinitis, Urticaria |
| IL23R | 3 / 23 | Behcet disease, Rhinitis, Uveitis |
| IL2RA | 3 / 23 | Allergic contact dermatitis, Dermatitis, Glomerulonephritis |
| ITGB2 | 3 / 23 | Behcet disease, Dermatitis, Hypersensitivity |
| MBL2 | 3 / 23 | Atopic dermatitis, Behcet disease, Rhinitis |
| MS4A2 | 3 / 23 | Atopic dermatitis, Hypersensitivity, Rhinitis |
| NAT2 | 3 / 23 | Allergic contact dermatitis, Atopic dermatitis, Behcet disease |
| NOD2 | 3 / 23 | Behcet disease, Dermatitis, Rhinitis |
| SELE | 3 / 23 | Allergic contact dermatitis, Atopic dermatitis, Urticaria |
| SERPINE1 | 3 / 23 | Behcet disease, Glomerulonephritis, Rhinitis |
| SHARPIN | 3 / 23 | Autoinflammation with episodic fever and immune dysregulation, Dermatitis, Eosinophilia |
| TNFRSF1A | 3 / 23 | Behcet disease, Hypersensitivity, Uveitis |
| TSLP | 3 / 23 | Atopic dermatitis, Eosinophilia, Hypersensitivity |
| VDR | 3 / 23 | Atopic dermatitis, Autoimmune hepatitis, Behcet disease |
| ABCB1 | 2 / 23 | Behcet disease, Rhinitis |
| ABI3BP | 2 / 23 | Angioedema, Urticaria |
| ALK | 2 / 23 | Behcet disease, Glomerulonephritis |
| BANK1 | 2 / 23 | Angioedema, Urticaria |
| BCL2 | 2 / 23 | Allergic contact dermatitis, Contact dermatitis |
| BDKRB2 | 2 / 23 | Angioedema, Rhinitis |
| BDNF | 2 / 23 | Atopic dermatitis, Rhinitis |
| CAPSL | 2 / 23 | Dermatitis, Rhinitis |
| CASP8 | 2 / 23 | Allergic contact dermatitis, Contact dermatitis |
| CAT | 2 / 23 | Behcet disease, Rhinitis |
| CCL11 | 2 / 23 | Atopic dermatitis, Hypersensitivity |
| CCL17 | 2 / 23 | Atopic dermatitis, Hypersensitivity |
| CCL19 | 2 / 23 | Allergic contact dermatitis, Hypersensitivity |
| CCL26 | 2 / 23 | Eosinophilia, Rhinitis |
| CCL3 | 2 / 23 | Glomerulonephritis, Hypersensitivity |
| CCL4 | 2 / 23 | Glomerulonephritis, Hypersensitivity |
| CCL7 | 2 / 23 | Glomerulonephritis, Hypersensitivity |
| CDH19 | 2 / 23 | Glomerulonephritis, Microscopic polyangiitis |
| CLDN1 | 2 / 23 | Atopic dermatitis, Contact dermatitis |
| CNDP1 | 2 / 23 | Carnosinemia, Glomerulonephritis |
| CXCL1 | 2 / 23 | Autoimmune hepatitis, Hypersensitivity |
| CXCL8 | 2 / 23 | Behcet disease, Glomerulonephritis |
| CYP2D6 | 2 / 23 | Autoimmune hepatitis, Rhinitis |
| EGFR | 2 / 23 | Behcet disease, Dermatitis |
| ERAP1 | 2 / 23 | Behcet disease, Uveitis |
| F12 | 2 / 23 | Angioedema, Urticaria |
| F2 | 2 / 23 | Autoimmune hepatitis, Glomerulonephritis |
| F5 | 2 / 23 | Angioedema, Eosinophilia |
| FAS | 2 / 23 | Behcet disease, Glomerulonephritis |
| FCGR3A | 2 / 23 | Behcet disease, Rhinitis |
| GLB1 | 2 / 23 | Atopic dermatitis, Contact dermatitis |
| GSTM1 | 2 / 23 | Atopic dermatitis, Urticaria |
| GSTP1 | 2 / 23 | Atopic dermatitis, Contact dermatitis |
| GTPBP2 | 2 / 23 | Eosinophilia, jaberi-elahi syndrome |
| HLA-A | 2 / 23 | Dermatitis, Uveitis |
| HLF | 2 / 23 | Angioedema, Urticaria |
| HMOX1 | 2 / 23 | Contact dermatitis, Rhinitis |
| ICAM1 | 2 / 23 | Behcet disease, Urticaria |
| IFT43 | 2 / 23 | Angioedema, Urticaria |
| IL17A | 2 / 23 | Hypersensitivity, Rhinitis |
| IL1A | 2 / 23 | Allergic contact dermatitis, Behcet disease |
| IL1RN | 2 / 23 | Glomerulonephritis, Rhinitis |
| IL33 | 2 / 23 | Atopic dermatitis, Hypersensitivity |
| IL4R | 2 / 23 | Atopic dermatitis, Rhinitis |
| ITPKB | 2 / 23 | ITPKB deficiency, Urticaria |
| KLF13 | 2 / 23 | Eosinophilia, Glomerulonephritis |
| KNG1 | 2 / 23 | Angioedema, Hypersensitivity |
| LEP | 2 / 23 | Autoimmune hepatitis, Rhinitis |
| MEFV | 2 / 23 | Behcet disease, Urticaria |
| MRC1 | 2 / 23 | Allergic contact dermatitis, Rhinitis |
| MTHFR | 2 / 23 | Glomerulonephritis, Hypersensitivity |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Cytokine-cytokine receptor interaction | KEGG | 86 / 298 | 5.4× | 2.54e-40 | 1.88e-36 ✓ sig. |
| Inflammatory bowel disease | KEGG | 41 / 66 | 11.6× | 7.38e-36 | 3.04e-32 ✓ sig. |
| Viral protein interaction with cytokine and cytokine receptor | KEGG | 48 / 100 | 8.9× | 1.38e-34 | 4.93e-31 ✓ sig. |
| Interleukin-4 and Interleukin-13 signaling | Reactome | 47 / 108 | 8.1× | 1.89e-31 | 5.38e-28 ✓ sig. |
| Interleukin-10 signaling | Reactome | 31 / 47 | 12.3× | 1.42e-28 | 3.36e-25 ✓ sig. |
| Chemokine receptors bind chemokines | Reactome | 31 / 59 | 9.8× | 2.83e-24 | 4.50e-21 ✓ sig. |
| Th17 cell differentiation | KEGG | 39 / 109 | 6.7× | 1.65e-22 | 1.88e-19 ✓ sig. |
| Rheumatoid arthritis | KEGG | 34 / 95 | 6.7× | 8.85e-20 | 6.26e-17 ✓ sig. |
| JAK-STAT signaling pathway | KEGG | 43 / 168 | 4.8× | 2.53e-18 | 1.52e-15 ✓ sig. |
| Lipid and atherosclerosis | KEGG | 47 / 216 | 4.1× | 7.25e-17 | 3.25e-14 ✓ sig. |
| Chemokine signaling pathway | KEGG | 44 / 193 | 4.2× | 1.15e-16 | 5.01e-14 ✓ sig. |
| Toxoplasmosis | KEGG | 33 / 112 | 5.5× | 2.55e-16 | 1.04e-13 ✓ sig. |
| Tuberculosis | KEGG | 42 / 181 | 4.3× | 2.97e-16 | 1.19e-13 ✓ sig. |
| Leishmaniasis | KEGG | 27 / 78 | 6.4× | 1.51e-15 | 5.48e-13 ✓ sig. |
| Malaria | KEGG | 22 / 50 | 8.2× | 1.74e-15 | 6.21e-13 ✓ sig. |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| immune response | GO:0006955 | 110 / 543 | 5.9× | 1.00e-53 | 3.55e-49 ✓ sig. |
| inflammatory response | GO:0006954 | 100 / 467 | 6.2× | 4.47e-51 | 1.05e-46 ✓ sig. |
| chemotaxis | GO:0006935 | 43 / 161 | 7.7× | 2.07e-26 | 7.54e-23 ✓ sig. |
| cytokine-mediated signaling pathway | GO:0019221 | 39 / 145 | 7.8× | 3.49e-24 | 1.01e-20 ✓ sig. |
| positive regulation of inflammatory response | GO:0050729 | 35 / 122 | 8.3× | 7.43e-23 | 1.80e-19 ✓ sig. |
| antimicrobial humoral immune response mediated by antimicrobial peptide | GO:0061844 | 35 / 124 | 8.2× | 1.36e-22 | 3.15e-19 ✓ sig. |
| cellular response to lipopolysaccharide | GO:0071222 | 40 / 187 | 6.2× | 8.95e-21 | 1.55e-17 ✓ sig. |
| response to lipopolysaccharide | GO:0032496 | 37 / 161 | 6.7× | 1.94e-20 | 3.24e-17 ✓ sig. |
| positive regulation of type II interferon production | GO:0032729 | 26 / 77 | 9.8× | 2.64e-19 | 3.64e-16 ✓ sig. |
| chemokine-mediated signaling pathway | GO:0070098 | 24 / 64 | 10.9× | 3.68e-19 | 4.93e-16 ✓ sig. |
| positive regulation of gene expression | GO:0010628 | 59 / 504 | 3.4× | 1.70e-16 | 1.55e-13 ✓ sig. |
| positive regulation of tumor necrosis factor production | GO:0032760 | 27 / 113 | 6.9× | 1.02e-15 | 8.09e-13 ✓ sig. |
| cell surface receptor signaling pathway | GO:0007166 | 48 / 373 | 3.7× | 3.32e-15 | 2.40e-12 ✓ sig. |
| cell surface receptor signaling pathway via JAK-STAT | GO:0007259 | 21 / 67 | 9.1× | 4.23e-15 | 3.00e-12 ✓ sig. |
| eosinophil chemotaxis | GO:0048245 | 13 / 20 | 18.8× | 5.44e-15 | 3.79e-12 ✓ sig. |